6f1e1d0f88
gnu: r-inspect: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.0.
2018-11-07 12:26:32 +01:00
c348cfed74
gnu: r-rots: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.0.
2018-11-07 12:26:32 +01:00
016afac30f
gnu: r-glimma: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.0.
2018-11-07 12:26:32 +01:00
6ea9ae9c39
gnu: r-goseq: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.0.
2018-11-07 12:26:32 +01:00
b858338c76
gnu: r-ctc: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-ctc): Update to 1.56.0.
2018-11-07 12:26:32 +01:00
5f2d0e635e
gnu: r-genomicinteractions: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.16.0.
2018-11-07 12:26:32 +01:00
bbc4787cf2
gnu: r-interactionset: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.10.0.
2018-11-07 12:26:32 +01:00
c4fed658a9
gnu: r-riboseqr: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.16.0.
2018-11-07 12:26:32 +01:00
e22e462b33
gnu: r-riboprofiling: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.12.0.
2018-11-07 12:26:32 +01:00
e9427b2c78
gnu: r-ripseeker: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.22.0.
2018-11-07 12:26:32 +01:00
aa802eafb6
gnu: r-chipcomp: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0.
2018-11-07 12:26:32 +01:00
4728e27511
gnu: r-bayseq: Update to 2.16.0.
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* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0.
2018-11-07 12:26:32 +01:00
57d2fcd9ee
gnu: r-chippeakanno: Update to 3.16.0.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
2018-11-07 12:26:32 +01:00
14520b640e
gnu: r-graph: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0.
2018-11-07 12:26:32 +01:00
95ee4a466b
gnu: r-multtest: Update to 2.38.0.
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* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
2018-11-07 12:26:32 +01:00
a92f523026
gnu: r-qdnaseq: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
2018-11-07 12:26:32 +01:00
9add0933d0
gnu: r-cghcall: Update to 2.44.0.
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* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
2018-11-07 12:26:32 +01:00
46cdceef4c
gnu: r-cghbase: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
2018-11-07 12:26:32 +01:00
f1c606ce8c
gnu: r-marray: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
2018-11-07 12:26:32 +01:00
98652568a4
gnu: r-diffbind: Update to 2.10.0.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
2018-11-07 12:26:31 +01:00
6168692159
gnu: r-hpar: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
2018-11-07 12:26:31 +01:00
1e605c030f
gnu: Add r-biocmanager.
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* gnu/packages/cran.scm (r-biocmanager): New variable.
2018-11-07 12:26:31 +01:00
b58940cb03
gnu: Add r-ncdf4.
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* gnu/packages/cran.scm (r-ncdf4): New variable.
2018-11-07 12:26:31 +01:00
bfa5662e38
gnu: Add r-rcppannoy.
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* gnu/packages/cran.scm (r-rcppannoy): New variable.
2018-11-07 12:26:31 +01:00
8243f4e55a
gnu: slang: Use a correct location for terminfo dirs.
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As termcap is disabled and no terminfo directory is given, slang is not able
to query terminal capabilities. Specifying a correct path for terminfo will
automatically disable termcap support in the configuration.
* gnu/packages/slang.scm (slang)[source]: Remove the snippet disabling
termcap.
[arguments]: Set MISC_TERMINFO_DIRS to a correct location.
2018-11-07 18:39:19 +09:00
a7903ca150
gnu: terminals: Change libtsm and kmscon repositories.
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Those two packages (from the same author) are no longer maintained and do not
even compile. Switch to a fork that is maintained even if it does not have any
release yet.
* gnu/packages/terminals.scm (libtsm)[origin]: Use
"https://github.com/Aetf/libtsm " as new origin and switch to git-fetch method.
(kmscon)[origin]: Use "https://github.com/Aetf/kmscon " as new origin and
switch to git-fetch method.
2018-11-07 18:27:01 +09:00
2d9dace8c2
services: kmscon: Add an auto-login option.
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Add an auto-login option that behaves as the one of mingetty-service.
* gnu/services/base.scm (kmscon-configuration)[auto-login]: New field.
(kmscon-service-type): Pass it to kmscon command.
* doc/guix.texi (Base Services): Document it.
2018-11-07 18:21:42 +09:00
f4e8bc5f25
services: kmscon: Do not switch to vt at start.
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* gnu/services/base.scm (kmscon-service-type): Add "--no-switchvt" to kmscon
command.
2018-11-07 18:15:00 +09:00
581720bc74
gnu: Add guile-newt.
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* gnu/packages/guile.scm (guile-newt): New variable.
2018-11-07 18:09:30 +09:00
cbb5d2e145
gnu: kodi: Fix typo.
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This is a follow-up to 2c17bd7b29
2018-11-07 10:38:13 +02:00
02e2133bd2
gnu: LibreOffice: Update to 6.1.3.2.
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* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.3.2.
2018-11-06 23:13:50 -05:00
b20aef98a0
gnu: GnuPG: Update to 2.2.11.
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* gnu/packages/gnupg.scm (gnupg): Update to 2.2.11.
2018-11-06 17:26:45 -05:00
c5ce2db569
install: Add 'install-database-and-gc-roots'.
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* gnu/build/install.scm (%root-profile): New variable.
(install-database-and-gc-roots): New procedure.
(populate-single-profile-directory): Replace inline code with a call to
'install-database-and-gc-roots'.
2018-11-06 23:21:24 +01:00
b27ef1d46c
pack: Import (guix store database) only when '--localstatedir' is passed.
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This is another way to address <https://bugs.gnu.org/32184 >, which was
previously addressed in commit 19c924af4f19c924af4f
2018-11-06 23:21:23 +01:00
ec4c81fe32
pack: Move store database creation to a separate derivation.
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* guix/scripts/pack.scm (store-database): New procedure.
(self-contained-tarball): Use it when LOCALSTATEDIR? is true.
Remove 'schema' and add 'database'.
[build]: Pass DATABASE to 'populate-single-profile-directory'.
(squashfs-image): Remove #:deduplicate? parameter.
[build]: Remove (gnu build install) and (guix config) from the imported
modules. Remove 'with-extensions'.
* gnu/build/install.scm (populate-single-profile-directory): Remove
#:deduplicate?, #:register?, and #:schema; add #:database. Remove call
to 'register-closure' and simply copy DATABASE instead.
2018-11-06 23:21:23 +01:00
c6b05bacc0
gnu: nginx: Update to 1.14.1 [security fixes].
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This fixes CVE-2018-16843, CVE-2018-16844, and CVE-2018-16845.
* gnu/packages/web.scm (nginx): Update to 1.14.1.
2018-11-06 21:34:30 +01:00
f25614229b
gnu: Syncthing: Update to 0.14.52.
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* gnu/packages/syncthing.scm (syncthing): Update to 0.14.52.
2018-11-06 11:16:22 -05:00
4cceb1432a
gnu: libgit2: Work around test failures on 32-bit platforms.
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* gnu/packages/patches/libgit2-oom-test.patch: New file.
* gnu/packages/version-control.scm (libgit2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-06 17:08:46 +01:00
158c02dffa
gnu: Add xcb-util-errors.
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* gnu/packages/xorg.scm (xcb-util-errors): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-06 17:00:02 +01:00
3527f600b5
gnu: guile-sqlite3: Update home page.
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* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Update.
2018-11-06 17:00:01 +01:00
cddc0300b7
gnu: Add r-weights.
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* gnu/packages/cran.scm (r-weights): New variable.
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2018-11-06 16:06:42 +01:00
fe4fb278b8
gnu: youtube-dl: Update to 2018.11.03.
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* gnu/packages/video.scm (youtube-dl): Update to 2018.11.03.
2018-11-06 15:34:37 +01:00
b1eeeb8dd4
gnu: terraform-docs: Update to 0.5.0.
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* gnu/packages/terraform.scm (terraform-docs): Update to 0.5.0.
[native-inputs]: Remove them all.
2018-11-06 15:34:36 +01:00
c3b8300af3
gnu: jq: Don't use NAME in source URI.
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* gnu/packages/web.scm (jq)[source]: Code more hard.
2018-11-06 15:34:36 +01:00
418dd6adb5
gnu: jq: Update to 1.6.
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* gnu/packages/web.scm (jq): Update to 1.6.
[source]: Remove upstreamed patch.
* gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-06 15:34:36 +01:00
c58f3ebaf8
gnu: ffmpeg: Update to 4.1.
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* gnu/packages/video.scm (ffmpeg): Update to 4.1.
2018-11-06 12:02:59 +01:00
730e5fbc66
Revert "gnu: c-ares: Update to 1.15.0."
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c-ares has more than 3000 dependant packages.
This reverts commit b588adc96f
2018-11-06 12:22:02 +02:00
b588adc96f
gnu: c-ares: Update to 1.15.0.
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* gnu/packages/adns.scm (c-ares): Update to 1.15.0.
2018-11-06 08:32:56 +02:00
7f860a8be1
gnu: services: dns: Fix 'ddclient-activation'.
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* gnu/services/dns.scm (ddclient-activation): Fix procedure.
2018-11-06 07:16:44 +03:00
adde15186d
gnu: xf86-video-intel: Update to commit 0932a6b37ba6d5c9e916a1cb6ab89c3205b81a0c.
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* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-11.0932a6b.
2018-11-05 23:53:30 +01:00
Ricardo Wurmus