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37147 Commits

Author SHA1 Message Date
Ricardo Wurmus 08cd2d5b59
gnu: r-edger: Update to 3.24.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.24.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 12871693fe
gnu: r-genomeinfodb: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 9a8dd51979
gnu: r-iranges: Update to 2.16.0. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.16.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus a037453554
gnu: r-s4vectors: Update to 0.20.0. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.20.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 70f2758f71
gnu: r-dnacopy: Update to 1.56.0. 
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.56.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus a127d3522a
gnu: r-bioccheck: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.18.0.
[propagated-inputs]: Add r-knitr and r-biocmanager; remove r-biocinstaller.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 6087f5ce37
gnu: r-biocstyle: Update to 2.10.0. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.10.0.
[propagated-inputs]: Add biocmanager.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus c8dbb5fa7f
gnu: r-biocviews: Update to 1.50.1. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.1.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 36d7d823a4
gnu: r-biocinstaller: Update to 1.32.1. 
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.32.1.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 2f28ffd81d
gnu: r-biocgenerics: Update to 0.28.0. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.28.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 5c996cab4c
gnu: r-grohmm: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.16.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus bf25930cf6
gnu: r-systempiper: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.16.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 9adf78c21e
gnu: r-shortread: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.40.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 4a4b5b8537
gnu: r-gostats: Update to 2.48.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.48.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 95ae5acc89
gnu: r-category: Update to 2.48.0. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 6dfb0b25ae
gnu: r-gseabase: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.44.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 19a6149190
gnu: r-rbgl: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 2ff6604a53
gnu: r-annotationforge: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.24.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 856444a0a1
gnu: r-dexseq: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus b5c552e654
gnu: r-deseq2: Update to 1.22.1. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.22.1.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 85fb33a051
gnu: r-genefilter: Update to 1.64.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.64.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus f4a95a0d15
gnu: r-geneplotter: Update to 1.60.0. 
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.60.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus dadd682c53
gnu: r-copynumber: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.22.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 090d4c0159
gnu: r-annotate: Update to 1.60.0. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.60.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 00281ea3cd
gnu: r-modelmetrics: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.2.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 9bd78484a2
gnu: r-preprocesscore: Update to 1.44.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.44.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 1b3552310d
gnu: r-tidyr: Update to 0.8.2. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.2.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 466397c35b
gnu: r-dt: Update to 0.5. 
* gnu/packages/statistics.scm (r-dt): Update to 0.5.
[propagated-inputs]: Add r-promises.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 9094eb892c
gnu: r-roxygen2: Update to 6.1.1. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.1.1.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 0de3ebb099
gnu: r-survival: Update to 2.43-1. 
* gnu/packages/statistics.scm (r-survival): Update to 2.43-1.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 83ca17d8e8
gnu: r-matrix: Update to 1.2-15. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-15.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 1966d8ffc7
gnu: r-lattice: Update to 0.20-38. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-38.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 600a25eb04
gnu: r-mass: Update to 7.3-51.1. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.1.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus a44f8b00fe
gnu: r-pander: Update to 0.6.3. 
* gnu/packages/cran.scm (r-pander): Update to 0.6.3.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 7466c3bb06
gnu: r-rcmdcheck: Update to 1.3.1. 
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.1.
[propagated-inputs]: Add r-sessioninfo.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus fc532b452f
gnu: r-remotes: Update to 2.0.2. 
* gnu/packages/cran.scm (r-remotes): Update to 2.0.2.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 3d6fa1a3ad
gnu: r-sessioninfo: Update to 1.1.1. 
* gnu/packages/cran.scm (r-sessioninfo): Update to 1.1.1.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 244a5c43ec
gnu: r-flextable: Update to 0.4.6. 
* gnu/packages/cran.scm (r-flextable): Update to 0.4.6.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 84d0d860e1
gnu: r-sjmisc: Update to 2.7.6. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.6.
[propagated-inputs]: Remove r-pillar, r-tibble, and r-tidyselect.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus cea8a60747
gnu: r-xts: Update to 0.11-2. 
* gnu/packages/cran.scm (r-xts): Update to 0.11-2.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 5d986a3b41
gnu: r-psych: Update to 1.8.10. 
* gnu/packages/cran.scm (r-psych): Update to 1.8.10.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 56af171ffd
gnu: r-ipred: Update to 0.9-8. 
* gnu/packages/cran.scm (r-ipred): Update to 0.9-8.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus ec0ee08576
gnu: r-ffbase: Update to 0.12.7. 
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.7.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 65dd0e6748
gnu: r-pkgload: Update to 1.0.2. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.2.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 0dd84df121
gnu: r-ps: Update to 1.2.1. 
* gnu/packages/cran.scm (r-ps): Update to 1.2.1.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 269182b0f1
gnu: r-rgraphviz: Update to 2.26.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.26.0.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus bb47aca5e7
gnu: Add hdf5-1.10. 
* gnu/packages/maths.scm (hdf5-1.10): New variable.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus d639d8884c
gnu: r-regioner: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus ed35d7ca1f
gnu: r-ruvseq: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.0.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 286157dc49
gnu: Add r-biocneighbors. 
* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
 2018-11-07 12:26:33 +01:00