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17014 Commits

Author SHA1 Message Date
Ben Woodcroft 2df3d147ef
gnu: orfm: Update to 0.6.0. 
* gnu/packages/bioinformatics.scm (orfm): Update to 0.6.0.
 2016-12-12 20:49:31 +10:00
Christopher Baines 23b40c6625
gnu: direnv: Update to 2.10.0. 
* gnu/packages/shellutils.scm (direnv): Update to 2.10.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-11 17:58:55 -05:00
Leo Famulari 4a990395d7
Merge branch 'staging' 2016-12-11 15:03:52 -05:00
Danny Milosavljevic 0c6fc4b7e5
gnu: sunxi-tools: Update to 1.4.2. 
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-11 14:14:31 -05:00
Marius Bakke 4eb6ed28a3
gnu: python-html5lib: Add dependency on python-webencodings. 
* gnu/packages/python.scm (python-html5lib,
python2-html5lib)[propagated-inputs]: Add python-webencodings.
 2016-12-11 20:09:26 +01:00
Marius Bakke adbca19e83
gnu: Add python-webencodings. 
* gnu/packages/python.scm (python-webencodings, python2-webencodings): New
variables.
 2016-12-11 20:09:23 +01:00
Mark H Weaver 81d6fd2457
gnu: linux-libre: Update to 4.8.14. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.14.  Remove patches.
(linux-libre-arm-generic): Remove patches.
 2016-12-11 09:51:10 -05:00
Mark H Weaver 762bc71e21
gnu: linux-libre@4.4: Update to 4.4.38. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.38.
Remove patches.
 2016-12-11 09:51:08 -05:00
Ricardo Wurmus 0ff55f9d77
gnu: fcgi: Disable parallel building. 
* gnu/packages/web.scm (fcgi)[arguments]: Disable parallel building.
 2016-12-11 15:18:36 +01:00
Tobias Geerinckx-Rice 1ce6f33b0c
gnu: Add sshoot. 
* gnu/packages/vpn.scm (sshoot): New variable.
 2016-12-11 11:58:41 +01:00
Tobias Geerinckx-Rice 6c2e82bcb7
gnu: Add python-argcomplete. 
* gnu/packages/python.scm (python-argcomplete): New variable.
 2016-12-11 11:58:40 +01:00
Tobias Geerinckx-Rice 5c863d57ff
gnu: Add sshuttle. 
* gnu/packages/vpn.scm (sshuttle): New variable.
 2016-12-11 11:58:40 +01:00
Christopher Baines 97bb1ab665
services: Activate system prior to services. 
* gnu/services.scm (activation-script): Move 'activation-current-system'
call before (for-each primitive-load …).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-11 09:31:34 +01:00
Leo Famulari 5ce09ef18f
gnu: openjpeg-2.1.2: Use a meaningful file-name for the source code. 
This is a followup to commit 0e8b7b1c35.

* gnu/packages/image.scm (openjpeg-2.1.2)[source]: Give a meaningful
file-name.
 2016-12-11 02:25:16 -05:00
Leo Famulari b245f7589e
gnu: diffoscope: Update to 63. 
* gnu/packages/package-management.scm (diffoscope): Update to 63.
[arguments]: Remove obsolete 'disable-failing-test' and 'disable-egg-zipping'
phases. The former was fixed upstream, and the latter is fixed by the new Python
build system.
 2016-12-11 02:04:38 -05:00
Leo Famulari 0e8b7b1c35
gnu: openjpeg: Update replacement to 2.1.2 [fixes CVE-2016-{7445,8332}]. 
* gnu/packages/image.scm (openjpeg/fixed): Replace variable with ...
(openjpeg-2.1.2): ... this.
[patches]: Remove patches inherited from openjpeg.
(openjpeg)[replacement]: Replace with openjpeg-2.1.2.
 2016-12-11 02:04:31 -05:00
Mark H Weaver d94691e0c2
Merge branch 'master' into staging 2016-12-10 23:03:57 -05:00
Kei Kebreau edd1652e0a
gnu: Add denemo. 
* gnu/packages/music.scm (denemo): New variable.
 2016-12-10 19:40:01 -05:00
Tobias Geerinckx-Rice 14f4a46c98
gnu: libpsl: Update to 0.16.0. 
* gnu/packages/web.scm (libpsl): Update to 0.16.0.
 2016-12-11 00:50:13 +01:00
David Craven e31b75f22f
gnu: Add ocaml-menhir. 
* gnu/packages/ocaml.scm (ocaml-menhir): New variable.
 2016-12-10 21:47:08 +01:00
David Craven 2694d1dc80
gnu: coq: Update to 8.5pl2. 
* gnu/packages/ocaml.scm (coq): Update to 8.5pl2.
  [arguments]: Configure script takes single hyphen arguments.
 2016-12-10 21:47:08 +01:00
David Craven 60bc622b1d
gnu: idris: Update to 0.12.3. 
* gnu/packages/haskell.scm (idris): Update to 0.12.3.
  [origin]: Remove snippet.
  [inputs]: Add ghc-aeson, ghc-async, ghc-fsnotify, ghc-regex-tdfa,
  ghc-tasty-golden, ghc-tasty-rerun and ghc-terminal-size.
  [arguments]: Disable tests.
 2016-12-10 21:47:08 +01:00
David Craven 3ea25176f0
gnu: ghc-trifecta: Update to 1.6. 
* gnu/packages/haskell.scm (ghc-trifecta): Update to 1.6.
  [inputs]: Add ghc-doctest and ghc-quickcheck.
  [arguments]: Enable tests.
 2016-12-10 21:47:08 +01:00
David Craven 4e05c326ef
gnu: Add ghc-terminal-size. 
* gnu/packages/haskell.scm (ghc-terminal-size): New variable.
 2016-12-10 21:47:08 +01:00
David Craven 5e6cafe157
gnu: Add ghc-ieee754. 
* gnu/packages/haskell.scm (ghc-ieee754): New variable.
 2016-12-10 21:47:07 +01:00
David Craven f7e624b639
gnu: Add ghc-tasty-rerun. 
* gnu/packages/haskell.scm (ghc-tasty-rerun): New variable.
 2016-12-10 21:47:07 +01:00
David Craven b7f96285a5
gnu: Add ghc-fsnotify. 
* gnu/packages/haskell.scm (ghc-fsnotify): New variable.
 2016-12-10 21:47:07 +01:00
David Craven f63981de14
gnu: Add ghc-hinotify. 
* gnu/packages/haskell.scm (ghc-hinotify): New variable.
 2016-12-10 21:47:07 +01:00
Mark H Weaver 56c394ee43
gnu: icecat: Add more fixes from upstream mozilla-esr45. 
* gnu/packages/gnuzilla.scm (icecat)[sources]: Add more fixes from the
upstream mozilla-esr45 repository.
 2016-12-10 15:22:38 -05:00
Efraim Flashner 67c539e21f
gnu: Remove unused patch. 
* gnu/packages/patches/openjpeg-CVE-2015-6581.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-12-10 21:59:56 +02:00
Efraim Flashner a304b6c362
gnu: openjpeg: Add fixes for CVE-2016-{9850,9851}. 
* gnu/packages/image.scm (openjpeg)[replacement]: New field.
(openjpeg/fixed): New variable, patch against CVE-2016-9850,
CVE-2016-9851.
* gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-12-10 21:46:45 +02:00
Efraim Flashner 70c1d5ed05
gnu: ffmpeg@2.8: Update to 2.8.9. 
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.9.
 2016-12-10 21:00:23 +02:00
Efraim Flashner a6cd85742d
gnu: jasper: Update to 2.0.6. 
* gnu/packages/image.scm (jasper): Update to 2.0.6.
 2016-12-10 20:59:19 +02:00
Christopher Baines a77f036084
gnu: password-store: Don't run tests in parallel. 
* gnu/packages/password-utils.scm (password-store): Don't run tests in
  parallel, as it causes them to hang and the build to timeout.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-10 14:07:32 +01:00
Christopher Baines 619f98fa8f
gnu: password-store: Delete build phase 
* gnu/packages/password-utils.scm (password-store): Remove the build
  phase, as it is unused.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-10 14:04:18 +01:00
Marius Bakke fc184fe2de
gnu: openssl-next: Update to 1.1.0c [fixes CVE-{7053,7054,7055}]. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0c.
[arguments]: Duplicate 'configure' to add rpath flag previously handled by
now-defunct 'patch-runpath' phase. Duplicate 'remove-miscellany' phase.
 2016-12-10 14:00:05 +01:00
Kei Kebreau fdb552bbd4
gnu: windowmaker: Fix invocation of 'wmsetbg'. 
* gnu/packages/gnustep.scm (windowmaker)[arguments]: Add substitution of
40-character limit with a 107-character limit.
 2016-12-09 22:10:06 -05:00
Ben Woodcroft a225db5293
gnu: vsearch: Update to 2.3.4. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.4.
 2016-12-10 10:45:13 +10:00
Ben Woodcroft 7922ab8fe8
gnu: pardre: Update to 1.1.5-1. 
* gnu/packages/bioinformatics.scm (pardre): update to 1.1.5-1.
[source]: Update source hash.
 2016-12-10 10:45:12 +10:00
Mark H Weaver 6b2921c3ac
gnu: linux-libre: Add fixes for CVE-2016-8655 et al. 
* gnu/packages/linux.scm (linux-libre, linux-libre-arm-generic):
Add patches for CVE-2016-8655 and the vulnerability described in
<http://seclists.org/oss-sec/2016/q4/644>.
 2016-12-09 18:36:21 -05:00
Mark H Weaver 1134e99d86
gnu: linux-libre@4.4: Add fixes for CVE-2016-8655 et al. 
* gnu/packages/linux.scm (linux-libre-4.4): Add patches for CVE-2016-8655 and
the vulnerability described in <http://seclists.org/oss-sec/2016/q4/644>.
 2016-12-09 18:36:03 -05:00
Ludovic Courtès 72c0b68780
gnu: libsoup: Update to 2.56.0. 
* gnu/packages/gnome.scm (libsoup): Update to 2.56.0.
 2016-12-10 00:10:30 +01:00
Ludovic Courtès 27991c97e6
offload: Allow testing machines that match a regexp. 
* guix/scripts/offload.scm (check-machine-availability): Add 'pred'
parameter and honor it.
(guix-offload): for the "test" sub-command, accept an extra 'regexp'
parameter.  Pass a second argument to 'check-machine-availability'.
 2016-12-09 23:12:06 +01:00
Ludovic Courtès 2b513387cd
offload: Test each machine only once. 
* guix/scripts/offload.scm (check-machine-availability)[build-machine=?]:
New procedure.
Add call to 'delete-duplicates'.
 2016-12-09 23:02:02 +01:00
Ludovic Courtès bd8345777f
offload: Do not read ~/.ssh/known_hosts. 
* guix/scripts/offload.scm (open-ssh-session): Pass #:knownhosts to
'make-session'.
 2016-12-09 23:02:01 +01:00
Ben Woodcroft fdf3a68d9e
gnu: ruby-sdoc: Update to 0.4.2. 
* gnu/packages/ruby.scm (ruby-sdoc): Update to 0.4.2.
[arguments]: Remove 'relax-minitest-requirement' phase, Add 'set-rubylib'
phase.
[native-inputs]: Add ruby-hoe.
 2016-12-10 07:51:47 +10:00
Ben Woodcroft 71596c3ce6
gnu: Adjust gemspec modifications for ruby-2.3.2. 
* gnu/packages/ruby.scm (ruby-mocha)[arguments]: Adjust 'substitute*' of
gemspec.
(ruby-domain-name)[arguments]: Likewise.
 2016-12-10 07:50:16 +10:00
Mark H Weaver 750778abd4
gnu: linux-libre: Update to 4.8.13. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.13.
 2016-12-09 15:13:22 -05:00
Mark H Weaver 33d6a2ff9f
gnu: linux-libre@4.4: Update to 4.4.37. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.37.
 2016-12-09 15:10:17 -05:00
Paul Garlick f81c6a4932
gnu: gmsh: Update to 2.15.0. 
* gnu/packages/maths.scm (gmsh): Update to 2.15.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-09 19:14:21 +01:00