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14115 Commits

Author SHA1 Message Date
Ben Woodcroft 44514637ca
gnu: ruby-gherkin3: Rename to ruby-gherkin and update to 4.0.0. 
* gnu/packages/ruby.scm (ruby-gherkin3): Rename to ruby-gherkin and update to
4.0.0.
(ruby-cucumber-core)[propagated-inputs]: Adjust accordingly.
 2016-08-10 15:36:33 +10:00
Ben Woodcroft 29f49403a9
gnu: ruby-spring: Update to 1.7.2. 
* gnu/packages/rails.scm (ruby-spring): Update to 1.7.2.
 2016-08-10 15:36:33 +10:00
Ben Woodcroft 2d9f1c06b5
gnu: ruby-rspec: Update to 3.5.0. 
These packages should be updated together.

* gnu/packages/ruby.scm (ruby-rspec): Update to 3.5.0.
(ruby-rspec-core): Update to 3.5.0.
(ruby-rspec-mocks): Update to 3.5.0.
(ruby-rspec-expectation): Update to 3.5.1.
(ruby-rspec-support): Update to 3.5.0.
 2016-08-10 15:36:33 +10:00
Ben Woodcroft 1db791d5f4
gnu: ruby-rack: Update to 2.0.1. 
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.1.
[source]: Use GitHub and patch.
[native-inputs]: Add ruby-concurrent, ruby-minitest, ruby-minitest-sprint,
which.  Remove ruby-bacon.
[propagated-inputs]: Add ruby-concurrent.
* gnu/packages/patches/ruby-rack-ignore-failing-test.patch: New file.
* gnu/local.mk: Add it.
 2016-08-10 15:36:33 +10:00
Ben Woodcroft 9019b37fb7
gnu: ruby-concurrent: Remove dependencies. 
ruby-timecop and ruby-yard will links in a circular dependency chain after
ruby-rack is updated.

* gnu/packages/ruby.scm (ruby-concurrent)[arguments]: Remove
timecop-dependent tests.
[native-inputs]: Remove ruby-timecop, ruby-yard.
 2016-08-10 15:36:33 +10:00
Ben Woodcroft 2af45e5025
gnu: ruby-activesupport: Update to 5.0.0. 
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.0.0.
[arguments]: Include the library as a test.
[propagated-inputs]: Add ruby-concurrent.  Remove ruby-thread-safe,
ruby-json.
 2016-08-10 15:36:33 +10:00
Ben Woodcroft 3840373b39
gnu: ruby-puma: Update to 3.6.0. 
* gnu/packages/ruby.scm (ruby-puma): Update to 3.6.0.
[arguments]: Add 'delete-integration-tests' phase.
(gnu/packages/patches/ruby-puma-ignore-broken-test.patch):
Remove only one broken test.
 2016-08-10 15:36:33 +10:00
Leo Famulari 10fa1d98e1
gnu: mpd: Update to 0.19.18. 
* gnu/packages/mpd.scm (mpd): Update to 0.19.18.
 2016-08-09 21:08:06 -04:00
Mark H Weaver 5a1add373a
grafts: Make grafting faster. 
* guix/build/graft.scm (replace-store-references): Reimplement for
faster grafting.  Use binary I/O instead of textual I/O.  Replace
'mapping' argument (an alist) with 'replacement-table' (a vhash).
(rewrite-directory): Adapt to mapping argument change in
'replace-store-references'.  Remove 'with-fluids' that previously set
'%default-port-encoding' to #f, since we now use binary I/O.
(define-inline, hash-length): New macros.
(nix-base32-char?): New variable.
 2016-08-09 17:59:26 -04:00
Tomáš Čech ba6d25f3b9
gnu: bash-completion: Update to 2.3. Update the patch. 
* gnu/packages/bash.scm (bash-completion): Update to 2.3.
* gnu/packages/patches/bash-completion-directories.patch: New version of
  the patch for the same purpose.
 2016-08-09 09:23:38 +02:00
Tomáš Čech aa67d3c546
gnu: bash-completion: Modify to modify-phases. 
* gnu/packages/bash.scm (bash-completion): Use modify-phases instead of
  alist-cons-after.
 2016-08-09 09:23:35 +02:00
Danny Milosavljevic cccb4d2652
gnu: Add perl-crypt-openssl-random. 
* gnu/packages/tls.scm (perl-crypt-openssl-random): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:39 -04:00
Danny Milosavljevic e818f321fd
gnu: Add perl-io-socket-inet6. 
* gnu/packages/networking.scm (perl-io-socket-inet6): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:39 -04:00
Danny Milosavljevic be0c57338a
gnu: Add perl-mail-spf. 
* gnu/package/mail.scm (perl-mail-spf): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:39 -04:00
Danny Milosavljevic adff71ca5c
gnu: Add perl-crypt-openssl-bignum. 
* gnu/packages/tls.scm (perl-crypt-openssl-bignum, perl-crypt-arguments): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:39 -04:00
Danny Milosavljevic 4532c0c0ab
gnu: Add perl-crypt-openssl-rsa. 
* gnu/packages/tls.scm (perl-crypt-openssl-rsa): Add variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:38 -04:00
Danny Milosavljevic e741c4e424
gnu: Add perl-geo-ip. 
* gnu/packages/networking.scm (perl-geo-ip): Add variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:38 -04:00
Danny Milosavljevic b09a8b6f63
gnu: Add perl-net-cidr-lite. 
* gnu/packages/networking.scm (perl-net-cidr-lite): Add variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:38 -04:00
Danny Milosavljevic 22414177cd
gnu: Add perl-encode-detect. 
* gnu/packages/perl.scm (perl-encode-detect): Add variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:38 -04:00
Danny Milosavljevic 7ad2bd50f8
gnu: Add perl-test-trailingspace. 
* gnu/packages/perl.scm (perl-test-trailingspace): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:37 -04:00
Danny Milosavljevic 831fee8765
gnu: Add perl-file-find-object-rule. 
* gnu/packages/perl.scm (perl-file-find-object-rule): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:37 -04:00
Leo Famulari 4ec4aa4fc9
gnu: Add perl-file-find-object. 
* gnu/packages/perl.scm (perl-file-find-object): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:37 -04:00
Danny Milosavljevic 3ed361ea09
gnu: Add perl-net-patricia. 
* gnu/packages/networking.scm (perl-net-patricia): Add variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:37 -04:00
Danny Milosavljevic 1201eab9c4
gnu: Add perl-netaddr-ip. 
* gnu/packages/networking.scm (perl-netaddr-ip): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:36 -04:00
Danny Milosavljevic 8d60dd7174
gnu: Add perl-net-dns-resolver-programmable. 
* gnu/packages/networking.scm (perl-net-dns-resolver-programmable): New variable.
* gnu/packages/patches/perl-net-dns-resolver-programmable-Fix-broken-interface.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:36 -04:00
Danny Milosavljevic 87b1409140
gnu: Add perl-socket6. 
* gnu/packages/networking.scm (perl-socket6): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:36 -04:00
Danny Milosavljevic 68b14f2e15
gnu: Add perl-net-dns. 
* gnu/packages/networking.scm (perl-net-dns): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:36 -04:00
Leo Famulari 6b5e654dd4
gnu: fontconfig: Fix CVE-2016-5384. 
* gnu/packages/fontutils.scm (fontconfig)[replacement]: New field.
(fontconfig/fixed): New variable.
* gnu/packages/patches/fontconfig-CVE-2016-5384.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-08 20:33:21 -04:00
8p8c ed6ba9cc7b
gnu: recordmydesktop: Add ALSA support. 
* gnu/packages/video.scm (recordmydesktop)[inputs]: Add ALSA-LIB

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 16:03:32 -04:00
Mathieu Lirzin 751f687175
gnu: Add tint2. 
* gnu/packages/xdisorg.scm (tint2): New variable.
 2016-08-08 21:58:02 +02:00
Jan Nieuwenhuizen 763b3d50b6
gnu: Add mono. 
* gnu/packages/mono.scm: New file.
* gnu/packages/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 14:27:13 -04:00
Ben Woodcroft ceb62d5436
gnu: Add roary. 
* gnu/packages/bioinformatics.scm (roary): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 608dd93267
gnu: Add raxml. 
* gnu/packages/bioinformatics.scm (raxml): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 024130d258
gnu: Add prank. 
* gnu/packages/bioinformatics.scm (prank): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft b16728b068
gnu: Add exonerate. 
* gnu/packages/bioinformatics.scm (exonerate): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft db7a344427
gnu: Add bppsuite. 
* gnu/packages/bioinformatics.scm (bppsuite): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 159a701678
gnu: Add bpp-popgen. 
* gnu/packages/bioinformatics.scm (bpp-popgen): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 8b5f4d5700
gnu: Add bpp-phyl. 
* gnu/packages/bioinformatics.scm (bpp-phyl): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 70f1bc051a
gnu: Add bpp-seq. 
* gnu/packages/bioinformatics.scm (bpp-seq): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 985d841144
gnu: Add bpp-core. 
* gnu/packages/bioinformatics.scm (bpp-core): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 791c11d6a0
gnu: Add mcl. 
* gnu/packages/machine-learning.scm (mcl): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft f559472939
gnu: Add perl-env-path. 
* gnu/packages/perl.scm (perl-env-path): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft f82cef25ca
gnu: Add perl-test-files. 
* gnu/packages/perl.scm (perl-test-files): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 67cc6d7380
gnu: Add perl-array-utils. 
* gnu/packages/perl.scm (perl-array-utils): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft b33fdcc488
gnu: Add perl-file-grep. 
* gnu/packages/perl.scm (perl-file-grep): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft b1ed9cf191
gnu: Add perl-file-path. 
* gnu/packages/perl.scm (perl-file-path): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 8a525c3f08
gnu: Add perl-file-slurper. 
* gnu/packages/perl.scm (perl-file-slurper): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 5eec378b79
gnu: Add perl-graph-readwrite. 
* gnu/packages/xml.scm (perl-graph-readwrite): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 085f59a50e
gnu: Add perl-graph. 
* gnu/packages/perl.scm (perl-graph): New variable.
 2016-08-08 22:08:17 +10:00
Ben Woodcroft 5e2b27b045
gnu: Add perl-parse-yapp. 
* gnu/packages/perl.scm (perl-parse-yapp): New variable.
 2016-08-08 22:08:17 +10:00