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33150 Commits

Author SHA1 Message Date
Ricardo Wurmus 13b8dcf589
gnu: r-seurat: Update to 2.3.2. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2.
[propagated-inputs]: Add r-hdf5r.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5b2a339e19
gnu: r-s4vectors: Update to 0.18.3. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5b730eba3e
gnu: r-biocviews: Update to 1.48.1. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus c812f46817
gnu: r-rjson: Update to 0.2.20. 
* gnu/packages/web.scm (r-rjson): Update to 0.2.20.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 242ffd6c80
gnu: r-zoo: Update to 1.8-2. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-2.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 6221de1879
gnu: r-rmarkdown: Update to 1.10. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.10.
[propagated-inputs]: Add r-tinytex.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus d086829d39
gnu: r-highr: Update to 0.7. 
* gnu/packages/statistics.scm (r-highr): Update to 0.7.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 26a53dd957
gnu: r-stringi: Update to 1.2.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.2.3.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 3399dc97fc
gnu: r-munsell: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-munsell): Update to 0.5.0.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 0357db53c8
gnu: r-rgooglemaps: Update to 1.4.2. 
* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.2.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 1df9a0cf47
gnu: r-reticulate: Update to 1.8. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.8.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus fa7236f1b3
gnu: r-later: Update to 0.7.3. 
* gnu/packages/cran.scm (r-later): Update to 0.7.3.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 36dc359186
gnu: r-radiant-data: Update to 0.9.5. 
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.5.
[propagated-inputs]: Remove r-plyr; add r-glue, r-plotly, r-readxl, r-rlang,
and r-writexl.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 014818b691
gnu: r-cubature: Update to 1.3-13. 
* gnu/packages/cran.scm (r-cubature): Update to 1.3-13.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 8d2f8aeddf
gnu: r-extradistr: Update to 1.8.9. 
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.9.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 1268a995da
gnu: r-statnet-common: Update to 4.1.2. 
* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.2.
[propagated-inputs]: Add r-coda.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 2bce7795c1
gnu: r-stringdist: Update to 0.9.5.1. 
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.1.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus d0396c8ea1
gnu: r-rcpproll: Update to 0.3.0. 
* gnu/packages/cran.scm (r-rcpproll): Update to 0.3.0.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus a151f1e60a
gnu: r-extremes: Update to 2.0-9. 
* gnu/packages/cran.scm (r-extremes): Update to 2.0-9.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus d87130cb2e
gnu: r-sp: Update to 1.3-1. 
* gnu/packages/cran.scm (r-sp): Update to 1.3-1.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5fa9be1118
gnu: r-getoptlong: Update to 0.1.7. 
* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.7.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 7b60ab3df7
gnu: r-circlize: Update to 0.4.4. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.4.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 693b4d0ba5
gnu: r-globaloptions: Update to 0.1.0. 
* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.0.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 846325a8d8
gnu: Add r-writexl. 
* gnu/packages/cran.scm (r-writexl): New variable.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 546fc4aa55
gnu: Add r-hdf5r. 
* gnu/packages/cran.scm (r-hdf5r): New variable.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 0c9868aa5b
gnu: Add r-nbclust. 
* gnu/packages/cran.scm (r-nbclust): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus f22bfee945
gnu: Add r-factoextra. 
* gnu/packages/cran.scm (r-factoextra): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus e83841a296
gnu: Add r-factominer. 
* gnu/packages/cran.scm (r-factominer): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus cbf6017d83
gnu: Add r-flashclust. 
* gnu/packages/cran.scm (r-flashclust): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 141e43bd4e
gnu: Add r-ellipse. 
* gnu/packages/cran.scm (r-ellipse): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 5cbaaee83f
gnu: Add r-ggpubr. 
* gnu/packages/cran.scm (r-ggpubr): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 5219c5c585
gnu: Add r-ggsignif. 
* gnu/packages/cran.scm (r-ggsignif): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 85df1a8631
gnu: Add r-ggsci. 
* gnu/packages/cran.scm (r-ggsci): New variable.
 2018-06-13 11:51:28 +02:00
Rutger Helling 0c6ade0be6
gnu: openrct2: Update to 0.2.0. 
* gnu/packages/games.scm (openrct2-title-sequences): New variable.
* gnu/packages/games.scm (openrct2-objects): New variable.
* gnu/packages/games.scm (openrct2): Update to 0.2.0.
[arguments]: Add phases 'fix-usr-share-path&add-data, 'fix-gcc7 and
'get-rid-of-errors.
[inputs]: Add icu4c, openrct2-objects, openrct2-title-sequences.
[native-inputs]: Add gcc@7.
 2018-06-13 11:33:03 +02:00
Clément Lassieur c24b15472b
tests: Honor the return value of 'start-service'. 
Since commit dc7b3e5633, 'start-service' returns
the Shepherd's representation of the service as a sexp, and '#f' if the
service fails to start.  Also, it doesn't throw an exception when the service
fails to start, so relying on an exception instead of relying on its return
value is a false positive.

* gnu/tests/base.scm (run-nss-mdns-test): Split tests so to check the return
value of 'start-service'.
(run-mcron-test, run-nss-mdns-test): Use 'test-assert' with the return value
of 'start-service'.
* gnu/tests/admin.scm (run-tailon-test): Idem.
* gnu/tests/dict.scm (run-dicod-test): Idem.
* gnu/tests/mail.scm (run-opensmtpd-test, run-exim-test, run-dovecot-test):
Idem.
* gnu/tests/messaging.scm (run-xmpp-test, run-bitlbee-test): Idem.
* gnu/tests/nfs.scm (run-nfs-test): Idem.
* gnu/tests/rsync.scm (run-rsync-test): Idem.
* gnu/tests/ssh.scm (run-ssh-test): Idem.
* gnu/tests/version-control.scm (run-cgit-test, run-git-http-test): Idem.
* gnu/tests/web.scm (run-php-fpm-test): Idem.
 2018-06-13 09:11:45 +02:00
Rutger Helling 14618a1ebb
gnu: vkquake: Update to 1.00.0. 
* gnu/packages/games.scm (vkquake): Update to 1.00.0.
 2018-06-13 08:47:14 +02:00
Rutger Helling 4b3480d62f
gnu: cheese: Update to 3.28.0. 
* gnu/packages/gnome.scm (cheese): Update to 3.28.0.
 2018-06-13 08:44:02 +02:00
Leo Famulari 3a30ae05ae
gnu: openimageio: Update to 1.7.19. 
* gnu/packages/graphics.scm (openimageio): Update to 1.7.19.
 2018-06-13 00:31:58 -04:00
Tobias Geerinckx-Rice 502a822dfd
gnu: tor: Update to 0.3.3.7. 
* gnu/packages/tor.scm (tor): Update to 0.3.3.7.
 2018-06-12 22:59:29 +02:00
Hartmut Goebel b5792b9cb8
gnu: Add qtwebglplugin. 
* gnu/packages/qt.scm (qtwebglplugin): New variable.

Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
 2018-06-12 22:47:01 +02:00
Hartmut Goebel 359e30c9ea
gnu: Add qtwebview. 
* gnu/packages/qt.scm (qtwebview): New variable.
 2018-06-12 22:47:01 +02:00
Christopher Baines 25e071ead9
services: nginx: Support extra content in the http block. 
This helpful when adding content to the nginx configuration file, which isn't
supported by the record type used for the configuration.  For example, like
adding proxy_cache_path configuration.

* gnu/packages/web.scm (<nginx-configuration>): Add new extra-content field.
  (nginx-configuration-extra-content): New field accessor.
  (default-nginx-config): Add support for the extra-content field.
* doc/guix.texi (NGINX): Document the new extra-content field.
 2018-06-12 21:18:10 +01:00
Leo Famulari bea07c7f55
gnu: python-llfuse: Update to 1.3.3. 
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.3.3.
 2018-06-12 15:30:30 -04:00
Jan Nieuwenhuizen 67cb662a31
gnu: mes: Update to 0.15. 
* gnu/packages/mes.scm (mes): Update to 0.15.
 2018-06-12 19:21:10 +02:00
Oleg Pykhalov 38212ff7b9
import: utils: Import more dependencies. 
* guix/import/utils.scm (recursive-import): Import more dependencies.
 2018-06-12 19:51:03 +03:00
Efraim Flashner 6921e95ae8
gnu: mame: Fix renaming executable. 
* gnu/packages/emulators.scm (mame)[arguments]: Only rename 'mame64' to
'mame' when 'mame64' exists.
 2018-06-12 19:08:47 +03:00
Mathieu Othacehe a9e7d6564b
gnu: multipath-tools: Fix build. 
(multipath-tools)[arguments]: Pass -n to gzip to avoid timestamp related
warnings causing build failures.
 2018-06-12 16:13:16 +02:00
Ludovic Courtès 5909bdc887
.gitignore: Add doc/stamp-[0-9]. 2018-06-12 15:23:34 +02:00
Ludovic Courtès 8d09bfe218
system: Move ~/.config/guix/current first in PATH and INFOPATH. 
Fixes <https://bugs.gnu.org/31770>.
Reported by iyzsong@member.fsf.org (宋文武).

* gnu/system.scm (operating-system-etc-service)["profile"]: Arrange so
that ~/.config/guix/current comes first in PATH and INFOPATH.
 2018-06-12 15:23:34 +02:00
Ludovic Courtès 90977eb55e
gnu: guile-bytestructures: Update to 1.0.3. 
* gnu/packages/guile.scm (guile-bytestructures): Update to 1.0.3.
(guile-git)[arguments]: Remove.  The workaround for
<https://github.com/TaylanUB/scheme-bytestructures/issues/30> is no
longer needed.
 2018-06-12 15:23:34 +02:00