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1613 Commits

Author SHA1 Message Date
Efraim Flashner 19b7bba1b5
Merge remote-tracking branch 'origin/master' into core-updates 2017-11-01 10:29:59 +02:00
Kyle Meyer 3414ce9876
gnu: snakemake: Update to 4.2.0. 
* gnu/packages/python.scm (snakemake): Update to 4.2.0.
[propagated-inputs]: Add python-appdirs, python-configargparse, python-pyyaml,
and python-ratelimiter, which are dependencies as of Snakemake 4.1.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-10-27 00:42:06 +02:00
Kyle Meyer 9d0866ce1b
gnu: Add python-ratelimiter. 
* gnu/packages/python.scm (python-ratelimiter, python2-ratelimiter): New
variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-10-27 00:42:06 +02:00
Kyle Meyer b89e3c77c6
gnu: python-configargparse: Update to 0.12.0. 
* gnu/packages/python.scm (python-configargparse, python2-configargparse):
Update to 0.12.0.
[arguments]: Enable tests.
[native-inputs]: Add python-pyyaml, which is an optional dependency but
required to run the tests.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-10-27 00:42:06 +02:00
Efraim Flashner eda8a841ac
Merge remote-tracking branch 'origin/python-updates' into core-updates 2017-10-26 12:45:11 +03:00
ng0 0046309398
gnu: Add python-coloredlogs. 
* gnu/packages/python.scm (python-coloredlogs, python2-coloredlogs): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-25 22:25:20 -07:00
ng0 7d4147634b
gnu: Add python-verboselogs. 
* gnu/packages/python.scm (python-verboselogs, python2-verboselogs): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-25 22:25:20 -07:00
ng0 2a81537f2f
gnu: Add python-capturer. 
* gnu/packages/python.scm (python-capturer, python2-capturer): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-25 22:25:19 -07:00
ng0 92eb9a3535
gnu: Add python-humanfriendly. 
* gnu/packages/python.scm (python-humanfriendly, python2-humanfriendly):
New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-25 22:25:19 -07:00
Marius Bakke ca4fd41de8
Merge branch 'master' into core-updates 2017-10-24 22:00:23 +02:00
Leo Famulari db4411b42b
gnu: python-docutils: Update to 0.14. 
* gnu/packages/python.scm (python-docutils, python2-docutils): Update to 0.14.
 2017-10-24 10:21:51 -04:00
Tobias Geerinckx-Rice 2b1b27990b
gnu: python-graphene: Disable tests. 
* gnu/packages/python.scm (python-graphene)[native-inputs]: Remove.
[arguments]: Disable #:tests.
 2017-10-23 14:49:30 +02:00
Marius Bakke ef7dd2e259
gnu: python-chardet: Fix PyPi download location. 
This is a followup to a54cb3ce1f.

* gnu/packages/python.scm (python-chardet)[source](uri): Use PYPI-URI.
 2017-10-22 23:32:17 +02:00
Marius Bakke 119a749db9
Merge branch 'master' into core-updates 2017-10-22 20:12:52 +02:00
Cyril Roelandt a54cb3ce1f
gnu: python-chardet: Update to 3.0.4. 
* gnu/packages/python.scm (python-chardet, python2-chardet): Update to 3.0.4.
 2017-10-22 17:13:19 +02:00
Cyril Roelandt 69f7f04544
gnu: python2-hypothesis: fix propagated inputs. 
* gnu/packages/python.scm (python2-hypothesis)[propagated-inputs]: Add
  python2-enum34, which was incorrectly listed among the native inputs.
 2017-10-22 17:13:15 +02:00
Efraim Flashner 49c620e068
gnu: python@3.6: Fix building on aarch64. 
* gnu/packages/python.scm (python@3.6)[source]: Remove another test.
 2017-10-20 10:38:02 +03:00
Ricardo Wurmus ad3c61fcd3
gnu: python-hy: Update to 0.13.0. 
* gnu/packages/python.scm (python-hy): Update to 0.13.0.
 2017-10-19 01:37:52 +02:00
Marius Bakke 71d9f5614d
gnu: python-coverage: Update to 4.4.1. 
* gnu/packages/python.scm (python-coverage): Update to 4.4.1.
 2017-10-19 00:16:52 +02:00
Marius Bakke 7439173f2c
gnu: python-unittest2: Update to 1.1.0. 
* gnu/packages/python.scm (python-unittest2): Update to 1.1.0.
[source]: Use PYPI-URI. Add two patches.
[arguments]: Add phase to run tests.
[propagated-inputs]: Add PYTHON-SIX and PYTHON-TRACEBACK2.
(python2-unittest2): Use 'package-with-python2'.
* gnu/packages/patches/python2-unittest2-remove-argparse.patch: Rename to ...
* gnu/packages/patches/python2-unittest2-remove-argparse.patch: ... this.
* gnu/packages/patches/python-unittest2-python3-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2017-10-19 00:16:52 +02:00
Marius Bakke 5db49f7ac8
gnu: python-jinja2: Remove workaround for < Python 3.6. 
* gnu/packages/python.scm (python-jinja2)[arguments]: Remove field.
 2017-10-19 00:16:51 +02:00
Marius Bakke 4ae65558b8
gnu: Remove python-mock@1. 
* gnu/packages/python.scm (python-mock): Update to 2.0.0.
[native-inputs]: Add PYTHON-UNITTEST2.
[propagated-inputs]: Add PYTHON-PBR and PYTHON-SIX.
[arguments]: Override 'check' phase.
[properties]: Declare python2 variant.
(python2-mock)[propagated-inputs]: Add PYTHON2-FUNCTOOLS32 and PYTHON2-FUNCSIGS.
(python-mock-2): Remove variable.
* gnu/packages/python.scm (python-flake8)[native-inputs]: Adjust accordingly.
* gnu/packages/tls.scm (python-acme, certbot)[native-inputs]: Likewise.
 2017-10-19 00:16:51 +02:00
Marius Bakke 6bb9645e57
gnu: Add python2-funcsigs. 
* gnu/packages/python.scm (python2-funcsigs): New variable.
 2017-10-19 00:16:51 +02:00
Marius Bakke a0fd9a3ca9
gnu: python-flake8: Update to 3.4.1. 
* gnu/packages/python.scm (python-flake8): Update to 3.4.1.
[source]: Remove obsolete snippet.
[arguments]: Override 'check' phase.
[propagated-inputs]: Remove PYTHON-PEP8. Add PYTHON-PYCODESTYLE and
PYTHON-SETUPTOOLS.
[native-inputs]: Change PYTHON-MOCK to PYTHON-MOCK-2. Remove PYTHON-NOSE. Add
PYTHON-PYTEST-BOOTSTRAP and PYTHON-PYTEST-RUNNER.
[properties]: Declare python2 variant.
* gnu/packages/python.scm (python-flake8)[propagated-inputs]: Add PYTHON2-ENUM
and PYTHON2-CONFIGPARSER.
 2017-10-19 00:16:51 +02:00
Marius Bakke a6c6a59faf
gnu: Add python2-enum. 
* gnu/packages/python.scm (python2-enum): New variable.
 2017-10-19 00:16:51 +02:00
Marius Bakke 3e6218b2dd
gnu: Fix pytest dependency cycle. 
* gnu/packages/python.scm (python-traceback2,
python-linecache2)[native-inputs]: Use PYTHON-PBR-MINIMAL instead of PYTHON-PBR.
 2017-10-19 00:16:51 +02:00
Marius Bakke 8f65361286
gnu: python-mock@2: Add dependency on python-six. 
* gnu/packages/python.scm (python-mock-2)[propagated-inputs]: Add PYTHON-SIX.
 2017-10-19 00:16:50 +02:00
Marius Bakke 31612e1cee
gnu: python-mccabe: Update to 0.6.1. 
* gnu/packages/python.scm (python-mccabe): Update to 0.6.1.
 2017-10-19 00:16:50 +02:00
Marius Bakke 0098b95064
gnu: python-pyflakes: Update to 1.5.0. 
* gnu/packages/python.scm (python-pyflakes): Update to 1.5.0.
 2017-10-19 00:16:50 +02:00
Marius Bakke f2ef961e59
gnu: python-pytest: Update to 3.2.3. 
* gnu/packages/python.scm (python-pytest): Update to 3.2.3.
[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
(python-pytest)[native-inputs]: Likewise.
(python2-pytest)[native-inputs]: Remove PYTHON2-ENUM34.
 2017-10-19 00:16:50 +02:00
Marius Bakke cf659519c9
gnu: python-setuptools-scm: Update to 1.15.6. 
* gnu/packages/python.scm (python-setuptools-scm): Update to 1.15.6.
 2017-10-19 00:16:50 +02:00
Marius Bakke 92b2101a56
gnu: python-pytest: Add a minimal variant for bootstrapping. 
* gnu/packages/python.scm (python-pytest-bootstrap, python2-pytest-bootstrap):
New variables.
(python-six, python-hypothesis, python-pytest-runner,
python-mccabe)[native-inputs]: Use PYTHON-PYTEST-BOOTSTRAP instead of
PYTHON-PYTEST.
 2017-10-19 00:16:50 +02:00
Marius Bakke 928da609b5
gnu: Remove python-pytest@2. 
* gnu/packages/python.scm (python-pytest): Update to 3.0.7.
[source]: Move substitution to ...
[arguments]: ... here. Incorporate phase from pytest-3.0.
[native-inputs]: Add PYTHON-HYPOTHESIS.
(python-pytest-3.0): Remove variable.
(python2-pytest-3.0): Rename to ...
(python2-pytest): ... this.
[native-inputs]: Add PYTHON2-ENUM34.
* gnu/packages/backup.scm (borg)[native-inputs]: Replace PYTHON-PYTEST-3.0
with PYTHON-PYTEST.
* gnu/packages/calendar.scm (khal): Likewise.
* gnu/packages/databases.scm (python-orator): Likewise.
* gnu/packages/python.scm (python-sphinx-1.6, python-sphinx-1.5.3,
python-pexpect, python-cryptography, python-pyopenssl, python-pytest-warnings,
python-pytest-capturelog, python-pytest-catchlog, python-marshmallow,
python-apispec, python-flasgger, python-pyjwt, python-grako,
python-honcho): Likewise.
* gnu/packages/web.scm (python-internetarchive): Likewise.
 2017-10-19 00:16:49 +02:00
Marius Bakke 8ed675a77f
gnu: python-six: Update to 1.11.0. 
* gnu/packages/python.scm (python-six): Update to 1.11.0.
 2017-10-19 00:16:49 +02:00
Marius Bakke 8dd339e5a6
gnu: python-six: Really enable tests. 
* gnu/packages/python.scm (python-six)[arguments]: Override 'check' phase.
 2017-10-19 00:16:49 +02:00
Marius Bakke 220b0ac38e
gnu: python-py: Update to 1.4.34. 
* gnu/packages/python.scm (python-py, python2-py): Update to 1.4.34.
 2017-10-19 00:16:49 +02:00
Marius Bakke b18226c3a1
gnu: python@3: Update to 3.6.3. 
* gnu/packages/patches/python-3.5-fix-tests.patch: Rename to ...
* gnu/packages/patches/python-3-fix-tests.patch: ... this. Adjust and disable
more tests.
* gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-2.7)[argument]: Patch '/bin/sh' in one more file.
(python-3.5): Rename to ...
(python-3.6): ... this. Update to 3.6.3.
[source](patches): Remove obsolete patch, adjust to patch rename.
(python-3): Use PYTHON-3.6.
 2017-10-19 00:16:49 +02:00
Marius Bakke 603a64920f
gnu: python@2: Update to 2.7.14. 
* gnu/packages/python.scm (python-2.7): Update to 2.7.14.
[source]: Add patch to skip two new tests.  Delete upstreamed patch.
* gnu/packages/patches/python-2.7-adjust-tests.patch: New file.
* gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2017-10-19 00:16:49 +02:00
Roel Janssen 357ab93aac
gnu: Add python2-py2neo. 
* gnu/packages/python.scm (python2-py2neo): New variable.
 2017-10-17 09:59:35 +02:00
Roel Janssen 4640a11bee
gnu: Add python2-neo4j-driver. 
* gnu/packages/python.scm (python2-neo4j-driver): New variable.
 2017-10-17 09:59:06 +02:00
Thomas Danckaert 8cff2e7aed
Merge 'master' into core-updates 2017-10-16 19:52:30 +02:00
Efraim Flashner 0751fddd91
gnu: python-cffi: Move to libffi.scm 
* gnu/packages/python.scm (python-cffi): Move from here ...
* gnu/packages/libffi.scm: ... to here.
* gnu/packages/crypto.scm, gnu/packages/password-utils.scm: Adjust
module imports.
 2017-10-15 11:57:15 +03:00
Efraim Flashner cca55d571c
gnu: python-cffi: Update to 1.11.2. 
* gnu/packages/python.scm (python-cffi): Update to 1.11.2.
[home-page]: Use 'https'.
 2017-10-15 11:57:15 +03:00
Efraim Flashner a1add5b7fb
gnu: python-cffi: Disable test that fails on aarch64. 
* gnu/packages/python.cm (python-cffi)[arguments]: Disable test that
is known to fail on aarch64.
 2017-10-15 11:57:15 +03:00
ng0 b35936880d
gnu: Add python-pyqrcode. 
* gnu/packages/python.scm (python-pyqrcode): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-14 17:07:37 +02:00
ng0 a4593cc95b
gnu: python-fonttools: Update to 3.15.1. 
* gnu/packages/python.scm (python-fonttools): Update to 3.15.1.
  (source)[uri]: Use 'pypi-uri'.
  (native-inputs): Add unzip.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2017-10-14 07:18:19 +01:00
Efraim Flashner e37415917c
gnu: python-psycopg2: Update to 2.7.3.1. 
* gnu/packages/python.scm (python-psycopg2): Update to 2.7.3.1.
[inputs]: Replace postgresql@9.6 with postgresql.
 2017-10-13 00:00:42 +03:00
Efraim Flashner 4e169fc67a
gnu: python-psycopg2: Use postgresql@9.6. 
* gnu/packages/python.scm (python-psycopg2)[inputs]: Replace postgresql
with postgresql@9.6.
 2017-10-12 23:39:36 +03:00
Christopher Baines ee8aab1f8d
gnu: Add python-jupyter-console as input to python-ipython. 
This fixes running ipython console and ipython3 console, as the
jupyter_console package is missing.

As python-ipython is an input to python-jupyter-console, use a modified
version of the package which doesn't have this input.

* gnu/packages/python.scm (python-jupyter-console-minimal): New variable.
  (python-ipython)[propagated-inputs]: Replace python-jupyter-console with
  python-jupyter-console-minimal.
 2017-10-12 20:23:25 +01:00
Ricardo Wurmus 22d1060eff
gnu: python-rpy2: Ignore test results. 
* gnu/packages/python.scm (python-rpy2)[arguments]: Ignore test failures.
 2017-10-11 11:06:05 +02:00