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14124 Commits

Author SHA1 Message Date
Ricardo Wurmus 0d1ffadc1d gnu: r-rmarkdown: Update to 0.9.5. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.5.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 408c2d6937 gnu: r-plotrix: Update to 3.6-1. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus cf3568a05d gnu: r-devtools: Update to 1.11.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.11.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus b5c574c61d gnu: r-rstudioapi: Update to 0.5. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.5.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 06a4af1283 gnu: r-git2r: Update to 0.14.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.14.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 904fa49de6 gnu: r-roxygen2: Update to 5.0.1. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 5.0.1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 2448c723b7 gnu: r-cluster: Update to 2.0.4. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.4.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 618dbdd7c0 gnu: r-memoise: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-memoise): Update to 1.0.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 8e4edf0802 gnu: r-microbenchmark: Update to 1.4-2.1. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-2.1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus bb61b765c0 gnu: r-knitr: Update to 1.12.3. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.12.3.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 1cfa88e988 gnu: r-formatr: Update to 1.3. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.3.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 49089e06ec gnu: r-evaluate: Update to 0.8.3. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.8.3.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 2c8fa9d702 gnu: r-bh: Update to 1.60.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus b268e49691 gnu: r-ggplot2: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.1.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus cf2e19a95a gnu: r-scales: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-scales): Update to 0.4.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 9ee6d314c4 gnu: r-stringi: Update to 1.0-1. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.0-1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus a99bed8cf3 gnu: r-munsell: Update to 0.4.3. 
* gnu/packages/statistics.scm (r-munsell): Update to 0.4.3.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus fe2087ccd8 gnu: r-digest: Update to 0.6.9. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.9.
[arguments]: Disable tests and vignettes.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus bae7953852 gnu: Add r-hexbin. 
* gnu/packages/statistics.scm (r-hexbin): New variable.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 94b7e9b7b4 gnu: Add r-tidyr. 
* gnu/packages/statistics.scm (r-tidyr): New variable.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus c26c062838 gnu: Add r-openssl. 
* gnu/packages/statistics.scm (r-openssl): New variable.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 35b2001a14 gnu: Add r-praise. 
* gnu/packages/statistics.scm (r-praise): New variable.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus fb868e3395 gnu: r-acsnminer: Update to 0.16.01.29. 
* gnu/packages/bioinformatics.scm (r-acsnminer): Update to 0.16.01.29.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus e1c2ad6777 gnu: r-qtl: Update to 1.39-5. 
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.39-5.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 2ff8212eb9 gnu: r-curl: Update to 0.9.7. 
* gnu/packages/web.scm (r-curl): Update to 0.9.7.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus c0bfa472bd gnu: r-htmlwidgets: Update to 0.6. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.6.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 46a2d1b66f gnu: r-servr: Update to 0.4. 
* gnu/packages/web.scm (r-servr): Update to 0.4.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 73d5d4aa63 gnu: r-jsonlite: Update to 0.9.19. 
* gnu/packages/web.scm (r-jsonlite): Update to 0.9.19.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus c587725a69 gnu: r-rcpp: Update to 0.12.4. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.4.
 2016-04-26 17:06:17 +02:00
Roel Janssen 6b49a37e6b gnu: Add filevercmp. 
* gnu/packages/bioinformatics.scm (filevercmp): New variable.
 2016-04-26 16:41:15 +02:00
Efraim Flashner 547cb17daf gnu: pinentry: Update to 0.9.7. 
* gnu/packages/gnupg.scm (pinentry): Update to 0.9.7.
 2016-04-26 15:28:54 +03:00
Alex Kost 82f4414271 gnu: manaplus: Update to 1.6.4.23. 
* gnu/packages/games.scm (manaplus): Update to 1.6.4.23.
 2016-04-26 12:41:26 +03:00
Alex Kost d1dfa22f9f gnu: git-modes: Update to 1.2.2. 
* gnu/packages/emacs.scm (git-modes): Update to 1.2.2.
 2016-04-26 12:41:26 +03:00
Alex Kost ffefa3da1a gnu: emacs-with-editor: Update to 2.5.1. 
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.1.
 2016-04-26 12:41:26 +03:00
Alex Kost edf6015c7d gnu: magit: Update to 2.6.1. 
* gnu/packages/emacs.scm (magit): Update to 2.6.1.
 2016-04-26 12:41:25 +03:00
Alex Kost 557361e79f emacs: Add "edit" command to a list of licenses. 
* emacs/guix-ui-license.el (guix-license-list-edit): New command.
(guix-license-list-mode-map): Bind it to "e" key.
 2016-04-26 12:32:56 +03:00
Alex Kost 57748c2756 emacs: Add license definition button to License Info buffer. 
* emacs/guix-ui-license.el (guix-license-insert-file): New procedure.
(guix-license-info-format): Use it.
 2016-04-26 12:32:56 +03:00
Alex Kost 8472b2fd2d emacs: Add 'guix-find-license-definition' command. 
* emacs/guix-license.el (guix-license-file): New procedure.
(guix-find-license-definition): New command.
* doc/emacs.texi (Emacs Licenses): Document it.
 2016-04-26 12:32:56 +03:00
Kei Yamashita f674439433 gnu: Add xfce4-taskmanager. 
* gnu/packages/xfce.scm (xfce4-taskmanager): Add variable.
 2016-04-26 09:25:03 +08:00
Eric Bavier f79ee25f32 gnu: woff2: Fix build parallelism. 
* gnu/packages/patches/woff2-libbrotli.patch: Add dependency of
executables on object files.
 2016-04-25 18:38:50 -05:00
Eric Bavier b77d17d023 import: cpan: check version bounds on core modules. 
Modules may be removed from Perl's core, so we must check for a removal
version.

* guix/import/cpan.scm (cpan-module->sexp)[core-module?]: Also check
version upper bound.
 2016-04-25 18:31:45 -05:00
Ludovic Courtès 5cd25aad3c
syscalls: 'terminal-columns' catches EINVAL on the TIOCGWINSZ ioctl. 
Reported by Mark H Weaver <mhw@netris.org>.

* guix/build/syscalls.scm (terminal-columns): Tolerate EINVAL.
* tests/syscalls.scm ("terminal-window-size ENOTTY"): Likewise.
 2016-04-25 23:34:20 +02:00
Ludovic Courtès 0054e47036
guix gc: Add '--free-space'. 
* guix/scripts/gc.scm (show-help, %options): Add '--free-space'.
(guix-gc)[ensure-free-space]: New procedure.
Handle '--free-space'.
 2016-04-25 23:27:09 +02:00
Ludovic Courtès a1f708787d
syscalls: Add 'statfs'. 
* guix/build/syscalls.scm (<file-system>): New record type.
(fsword): New macro.
(%statfs): New C struct.
(statfs): New procedure.
 2016-04-25 23:27:09 +02:00
Ludovic Courtès 785cfa8791
syscalls: 'define-c-struct' computes the struct size. 
* guix/build/syscalls.scm (struct-alignment, struct-size): New macros.
(define-c-struct): Add 'size' parameter and honor it.
(sockaddr-in, sockaddr-in6, ifaddrs, winsize): Adjust accordingly.
(%struct-ifaddrs-type, %sizeof-ifaddrs, winsize-struct): Remove.
(terminal-window-size): Use 'make-bytevector' instead of 'make-c-struct'.
 2016-04-25 23:27:09 +02:00
Ludovic Courtès f77863a09e
syscalls: Second argument of packed-struct read is now optional. 
* guix/build/syscalls.scm (define-c-struct)[read]: OFFSET defaults to 0.
(unfold-interface-list): Remove second argument to 'read-ifaddrs'.
(terminal-window-size): Remove second argument to 'read-winsize'.
 2016-04-25 23:27:09 +02:00
Ludovic Courtès 73f38d5ff3
syscalls: Move code around [NFC]. 
* guix/build/syscalls.scm: Move packed structure handling to the top.
 2016-04-25 23:27:09 +02:00
Ludovic Courtès f489ce3c93
Add "TasksMax=1024" in 'guix-daemon.service'. 
Suggested by Joram Schrijver <i+guix-devel@joram.io>.

* etc/guix-daemon.service.in (TasksMax): New value.
 2016-04-25 23:27:09 +02:00
Efraim Flashner a800018e03 gnu: python2-pysnptools: Update to 0.3.9. 
* gnu/packages/python.scm (python2-pysnptools): Update to 0.3.9.
[propagated-inputs]: Add python2-pytz. Move python2-pandas ...
[inputs]: ... to here. Add python2-dateutil-2, python2-six.
 2016-04-25 23:35:39 +03:00
Efraim Flashner 783fb0a3a2 gnu: python-terminado: Update to 0.6. 
* gnu/packages/python.scm (python-terminado): Update to 0.6.
[inputs]: Remove python-setuptools. Move python-nose ...
[native-inputs]: ... to here.
[properties]: Define python2-variant.
(python2-terminado): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-04-25 17:19:54 +03:00