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Author SHA1 Message Date
Rouby Pierre-Antoine 93b83eb31e
services: Add hpcguix-web. 
* gnu/service/web.scm (<hpcguix-web-configuration>): New record-type.
  (%hpcguix-web-accounts): New variable.
  (%hpcguix-web-activation,hpcguix-web-shepherd-service,
  hpcguix-web-service-type): New procedures.
* gnu/tests/web.scm (run-hpcguix-web-server-test): New procedure.
  (%hpcguix-web-specs, %hpcguix-web-os, %test-hpcguix-web): New variable.
* doc/guix.texi (Web Services): Add 'hpcguix-web'.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-01 13:50:26 +02:00
Rouby Pierre-Antoine d6a4dfec90
gnu: Add hpcguix-web. 
* gnu/package/web.scm (hpcguix-web): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-06-01 13:50:26 +02:00
Ludovic Courtès 7a4e2eaab3
marionette: Add 'wait-for-tcp-port'. 
* gnu/build/marionette.scm (wait-for-tcp-port): New procedure.
* gnu/tests/dict.scm (run-dicod-test)["connect inside"]: Use it instead
of the inline loop.
 2018-06-01 13:50:26 +02:00
Ludovic Courtès 5ede50b850
gnu: emacs-w3m: Update and allow builds with Emacs 26. 
* gnu/packages/emacs.scm (emacs-w3m)[source]: Grab the source from
github.com.
[native-inputs]: Add TEXINFO.
[arguments]: Add 'support-emacs!' phase.  In 'patch-exec-paths' phase,
make w3m.el and w3m-image.el writable.  Remove substitution for
'w3m-image-viewer', which no longer exists.
 2018-06-01 13:50:26 +02:00
Stefan Stefanović 8674abb1dd
gnu: sddm: Fix CMake build. 
* gnu/packages/display-managers.scm (sddm): Fix CMake build.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: New file.

Signed-off-by: Rutger Helling <rhelling@mykolab.com>
 2018-06-01 12:17:00 +02:00
Mathieu Othacehe 8fc3a971b0
scripts: system: Sort profile generations in reverse order. 
* guix/scripts/system.scm (profile-boot-parameters): Reverse
generation-numbers list. This allows old generations to be listed from most
recent to oldest in bootloaders configuration files.
 2018-06-01 09:40:07 +02:00
Leo Famulari e90322d201
gnu: prosody: Update to 0.10.2 [fixes CVE-2018-10847]. 
* gnu/packages/messaging.scm (prosody): Update to 0.10.2.
 2018-05-31 20:31:46 -04:00
Konrad Hinsen 555ab0853b
gnu: Add emacs-zotxt. 
* gnu/packages/emacs.scm (emacs-zotxt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-05-31 18:13:09 +02:00
Konrad Hinsen 45dca193a4
gnu: Add emacs-org-caldav. 
* gnu/packages/emacs.scm (emacs-org-caldav): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-05-31 18:13:08 +02:00
Konrad Hinsen ec8a9892d1
gnu: Add python-bigfloat. 
* gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-05-31 18:13:08 +02:00
Fis Trivial 73d854232f
gnu: bear: Fix python path. 
* gnu/packages/build-tools.scm (bear)
[inputs]: Add python-wrapper.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-05-31 18:13:08 +02:00
Ludovic Courtès 9768848af8
records: Make a couple of procedures available at expansion time. 
* guix/records.scm (current-abi-identifier, abi-check): Wrap in
'eval-when'.
 2018-05-31 18:13:08 +02:00
Ludovic Courtès b1059b38b2
system: 'read-boot-parameters' provides a more meaningful warning. 
'system' here was bound to Guile's 'system' procedure.

* gnu/system.scm (read-boot-parameters): Fix argument for fallback
warning.
 2018-05-31 18:13:08 +02:00
Ludovic Courtès 69a05eab35
file-systems: Always wait for devices to show up. 
Previously, 'canonicalize-device-spec' would wait for devices when they
were specified as a label or UUID, but would not wait when the user
passed a "/dev" file name directly.  This could cause problems when
the /dev node takes a while to show up.

* gnu/build/file-systems.scm (canonicalize-device-spec): Add 'resolve'
call in the 'string?' case.
 2018-05-31 18:13:08 +02:00
Ludovic Courtès e13240f598
self: Reduce the set of dependencies. 
By mistake we were adding more dependencies than needed to the Scheme
derivations.

* guix/self.scm (compiled-guix)[dependencies]: Use
'package-transitive-propagated-inputs', not 'package-transitive-inputs'.
 2018-05-31 18:13:08 +02:00
Ricardo Wurmus babeea3f9f
build-system/r: Use invoke. 
* guix/build/r-build-system.scm (invoke-r): Use invoke.
(pipe-to-r): Raise invoke-error on non-zero return value.
(check): Unconditionally return #t.
 2018-05-31 13:24:17 +02:00
Ricardo Wurmus 59f87b44da
Merge branch 'master' into core-updates 2018-05-31 13:23:49 +02:00
Ricardo Wurmus 404e5c7d7d
gnu: r-servr: Update to 0.10. 
* gnu/packages/web.scm (r-servr): Update to 0.10.
[native-inputs]: Remove r-rcpp.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus ce8b9e3b1c
gnu: r-seurat: Update to 2.3.1. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1.
[propagated-inputs]: Remove r-gridextra; add r-reticulate.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 508dd24abe
gnu: r-shiny: Update to 1.1.0. 
* gnu/packages/web.scm (r-shiny): Update to 1.1.0.
[source]: Fetch from git.
[propagated-inputs]: Add r-crayon.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus eb0d599a67
gnu: r-rjson: Update to 0.2.19. 
* gnu/packages/web.scm (r-rjson): Update to 0.2.19.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 71644c0ee8
gnu: r-htmltable: Update to 1.12. 
* gnu/packages/web.scm (r-htmltable): Update to 1.12.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus beb0878fe5
gnu: r-directlabels: Update to 2018.05.22. 
* gnu/packages/statistics.scm (r-directlabels): Update to 2018.05.22.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 089e037638
gnu: r-ranger: Update to 0.10.0. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.0.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 14bb6f5f83
gnu: r-tclust: Update to 1.4-1. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.4-1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9fad62743c
gnu: r-caret: Update to 6.0-80. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-80.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9bcc68fbf6
gnu: r-quantreg: Update to 5.36. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.36.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 13dc492435
gnu: r-rrcov: Update to 1.4-4. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 6f96c2d89e
gnu: r-ggthemes: Update to 3.5.0. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.5.0.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 366dd8d7cb
gnu: r-runit: Update to 0.4.32. 
* gnu/packages/statistics.scm (r-runit): Update to 0.4.32.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus edb29f2986
gnu: r-purrr: Update to 0.2.5. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.5.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus e94d827440
gnu: r-tidyr: Update to 0.8.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1957c20e0c
gnu: r-synchronicity: Update to 1.3.4. 
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 7da0790e2a
gnu: r-rngtools: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3a6051659d
gnu: r-pkgmaker: Update to 0.27. 
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.27.
[propagated-inputs]: Add r-bibtex, r-magrittr, r-stringi, and r-withr.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus b4ca0076bd
gnu: r-lambda-r: Update to 1.2.3. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.3.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus a52bb97a79
gnu: r-plotrix: Update to 3.7-2. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-2.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1ce6be5ee2
gnu: r-data-table: Update to 1.11.4. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 2d7758c1d6
gnu: r-rlang: Update to 0.2.1. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.2.1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 624283a107
gnu: r-knitrbootstrap: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.2.
[propagated-inputs]: Add r-markdown.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 22cdc16fa4
gnu: r-pheatmap: Update to 1.0.10. 
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.10.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 99b225f3eb
gnu: r-bit: Update to 1.1-14. 
* gnu/packages/statistics.scm (r-bit): Update to 1.1-14.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3c441be0f3
gnu: r-kernlab: Update to 0.9-26. 
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus ad016826c9
gnu: r-rmysql: Update to 0.10.15. 
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus aea3be250c
gnu: r-mice: Update to 3.0.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.0.0.
[propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 6034a62a1b
gnu: r-callr: Update to 2.0.4. 
* gnu/packages/cran.scm (r-callr): Update to 2.0.4.
[propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme,
and r-testthat.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus a8b4677b7c
gnu: r-openxlsx: Update to 4.1.0. 
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.
[propagated-inputs]: Add r-zip.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus e86d3cc501
gnu: r-shinyace: Update to 0.3.1. 
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1.
[propagated-inputs]: Add r-jsonlite.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus a80606308a
gnu: r-processx: Update to 3.1.0. 
* gnu/packages/cran.scm (r-processx): Update to 3.1.0.
[propagated-inputs]: Remove r-debugme; add r-testthat.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9944399ae3
gnu: r-ggally: Update to 1.4.0. 
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0.
[inputs]: Add libressl.
[propagated-inputs]: Add r-rlang.
 2018-05-31 13:21:31 +02:00