Commit Graph

20651 Commits

Author SHA1 Message Date
Ricardo Wurmus 7a8efc81f8
gnu: r-viridis: Update to 0.4.0.
* gnu/packages/statistics.scm (r-viridis): Update to 0.4.0.
[propagated-inputs]: Add "r-viridislite".
2017-04-06 14:39:17 +02:00
Ricardo Wurmus b5d5344f32
gnu: r-viridislite: Update to 0.2.0.
* gnu/packages/statistics.scm (r-viridislite): Update to 0.2.0.
2017-04-06 14:39:17 +02:00
Ricardo Wurmus cdadca5e6f
gnu: r-matrixstats: Update to 0.52.1.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.1.
2017-04-06 14:39:17 +02:00
Ricardo Wurmus af7a4cc8a8
gnu: r-mvtnorm: Update to 1.0-6.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-6.
2017-04-06 14:39:17 +02:00
Ricardo Wurmus 82b281fe12
gnu: r-e1071: Update to 1.6-8.
* gnu/packages/statistics.scm (r-e1071): Update to 1.6-8.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus 1d1fbb7336
gnu: r-sparsem: Update to 1.76.
* gnu/packages/statistics.scm (r-sparsem): Update to 1.76.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus fb708a1c74
gnu: r-xml: Update to 3.98-1.6.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.6.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus 1c27bb8f44
gnu: r-rsqlite: Update to 1.1-2.
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-2.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus 0def707ad8
gnu: r-rmarkdown: Update to 1.4.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.4.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus ac5e810205
gnu: r-bbmisc: Update to 1.11.
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.11.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus f1870aef99
gnu: r-backports: Update to 1.0.5.
* gnu/packages/statistics.scm (r-backports): Update to 1.0.5.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus d05e45f33c
gnu: r-multitaper: Update to 1.0-13.
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus 0fbae8ebca
gnu: r-xml2: Update to 1.1.1.
* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus c6e40db528
gnu: r-ade4: Update to 1.7-6.
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus 10ffdb94e4
gnu: r-data-table: Update to 1.10.4.
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus 9e8fac0c45
gnu: r-chron: Update to 2.3-50.
* gnu/packages/statistics.scm (r-chron): Update to 2.3-50.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus b8acb5aa46
gnu: r-cluster: Update to 2.0.6.
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus e8988ff9a0
gnu: r-dbi: Update to 0.6-1.
* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus 5e0fa201a2
gnu: r-gdtools: Update to 0.1.4.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus 7267f358a0
gnu: r-stringr: Update to 1.2.0.
* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus 5beda28f6b
gnu: r-stringi: Update to 1.1.3.
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus 69a8ed6a12
gnu: r-rcpp: Update to 0.12.10.
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus 9948b8e24c
gnu: r-digest: Update to 0.6.12.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.12.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus 344e4741a1
gnu: r-survival: Update to 2.41-3.
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus a6dcc78cb0
gnu: r-mgcv: Update to 1.8-17.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus 9704bda1b3
gnu: r-matrix: Update to 1.2-8.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
2017-04-06 14:39:12 +02:00
Ricardo Wurmus 9aea2cdaff
gnu: r-lattice: Update to 0.20-35.
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
2017-04-06 14:39:12 +02:00
Ricardo Wurmus 7ceb26ee83
gnu: r-rprojroot: Update to 1.2.
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
2017-04-06 14:39:12 +02:00
Ricardo Wurmus e15f962fef
gnu: r-htmltable: Update to 1.9.
* gnu/packages/web.scm (r-htmltable): Update to 1.9.
[propagated-inputs]: Add "r-checkmate" and "r-htmlwidgets".
2017-04-06 14:39:11 +02:00
Ricardo Wurmus d3812fb233
gnu: r-curl: Update to 2.4.
* gnu/packages/web.scm (r-curl): Update to 2.4.
2017-04-06 14:39:11 +02:00
Ricardo Wurmus 4cd07e487e
gnu: r-genomeinfodb: Update to 1.10.3.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.3.
[propagated-inputs]: Add "r-rcurl".
2017-04-06 14:39:11 +02:00
Ricardo Wurmus acbeb2d56b
gnu: r-xvector: Update to 0.14.1.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.1.
2017-04-06 14:39:11 +02:00
Ricardo Wurmus da250f733a
gnu: r-bioccheck: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.10.1.
[propagated-inputs]: Remove "r-knitr" and "r-devtools".
2017-04-06 14:39:11 +02:00
Ricardo Wurmus d51f05f769
gnu: r-tidyr: Update to 0.6.1.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
2017-04-06 14:39:10 +02:00
Ricardo Wurmus 1db293757b
gnu: r-roxygen2: Update to 6.0.1.
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
2017-04-06 14:39:10 +02:00
Ricardo Wurmus bf6dcf59eb
gnu: Add r-commonmark.
* gnu/packages/statistics.scm (r-commonmark): New variable.
2017-04-06 14:39:10 +02:00
Ricardo Wurmus 1cbb07a8e4
gnu: Add r-desc.
* gnu/packages/statistics.scm (r-desc): New variable.
2017-04-06 14:39:10 +02:00
Ricardo Wurmus 67deeea41b
gnu: r-readr: Update to 1.1.0.
* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
2017-04-06 14:39:09 +02:00
Ricardo Wurmus 33eb555e6f
gnu: r-tibble: Update to 1.3.0.
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
2017-04-06 14:39:09 +02:00
Ricardo Wurmus aad7808526
gnu: r-jsonlite: Update to 1.3.
* gnu/packages/web.scm (r-jsonlite): Update to 1.3.
2017-04-06 14:39:09 +02:00
Ricardo Wurmus 538bce2472
gnu: ldc-bootstrap: Delete failing test.
* gnu/packages/ldc.scm (ldc-bootstrap)[arguments]: Delete failing test in
build phase.
2017-04-06 14:34:12 +02:00
Ludovic Courtès cb5be6df91
gnu: guile-aspell: Switch to Guile 2.2.
* gnu/packages/guile.scm (guile-aspell)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
2017-04-06 10:45:55 +02:00
Ludovic Courtès 7295087eb1
gnu: guile-aspell: Remove hard-coded "site/2.0" from $(guilesitedir).
* gnu/packages/guile.scm (guile-aspell)[arguments]: Remove
  #:configure-flags.  Add 'set-guilesitedir' phase.
2017-04-06 10:42:51 +02:00
Ludovic Courtès 234ea3d653
gnu: guile-aspell: Update to 0.4.
* gnu/packages/guile.scm (guile-aspell): Update to 0.4.
[arguments] <#:phases>: Adjust 'set-libaspell-file-name' to new source
tree layout.
2017-04-06 10:37:52 +02:00
Chris Marusich 5ea69d9a56
system: Support the --root option in 'guix system'.
Fixes <https://bugs.gnu.org/26271>.

* guix/scripts/system.scm (perform-action): Add #:gc-root parameter and
honor it.
(show-help): Document the --root option.
(%options): Add 'root'.
(process-action): Pass 'root' option to perform-action as #:gc-root.
* doc/guix.texi (Invoking guix system): Document '--root'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-06 10:24:32 +02:00
Chris Marusich a09b45da6f
build: Add and export procedure 'register-root*'.
* guix/scripts/build.scm (register-root*): Add and export it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-06 10:11:26 +02:00
Ludovic Courtès 50f4ea18c4
environment: Deal with single-entry search paths.
This is a followup to fcd75bdbfa.

* guix/scripts/environment.scm (create-environment): Check whether
SEPARATOR is #f.
2017-04-05 22:50:21 +02:00
Ludovic Courtès 31f1f593fb
doc: Add "Documentation" section.
* doc/guix.texi (Documentation): New node.
2017-04-05 22:45:42 +02:00
Maxim Cournoyer a0b87ef8ec
profiles: Generate database file for man pages.
The mandb database file (index.db) is used by the "apropos" (whatis) or
"man -k" commands.  This change introduces a profile hook to generate
such database file.

* guix/profiles.scm (manual-database): New procedure.
(%default-profile-hooks): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-04-05 22:45:41 +02:00
Ludovic Courtès 1618006d0b
build-system/python: 'package-with-explicit-python' uses 'package-mapping'.
* guix/build-system/python.scm (package-with-explicit-python)
[package-variant, cut?]: New procedures.
[transform]: Remove 'mlambdaq' form and input tuple handling.
Use 'package-mapping'.
2017-04-05 22:45:41 +02:00