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2072 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice a855117c59
gnu: snakemake: Update home page. 
* gnu/packages/python.scm (snakemake)[home-page]: Update.
 2018-09-11 21:12:43 +02:00
Tobias Geerinckx-Rice 9b83c15afe
gnu: snakemake: Update to 5.2.2. 
* gnu/packages/python.scm (snakemake): Update to 5.2.2.
 2018-09-11 21:03:08 +02:00
Marius Bakke f659e5e379
gnu: python-waf: Update to 2.0.11. 
* gnu/packages/python.scm (python-waf): Update to 2.0.11.
 2018-09-11 13:43:03 +02:00
Tobias Geerinckx-Rice 4b41568fa5
gnu: python-binaryornot: Update to 0.4.4. 
* gnu/packages/python.scm (python-binaryornot): Update to 0.4.4.
 2018-09-10 22:15:20 +02:00
Tobias Geerinckx-Rice 86788cb0c9
gnu: python-parse: Update to 1.8.4. 
* gnu/packages/python.scm (python-parse): Update to 1.8.4.
 2018-09-10 22:15:20 +02:00
Tobias Geerinckx-Rice c0ea7f5ff4
gnu: python-parse: Mark up description. 
* gnu/packages/python.scm (python-parse)[description]: Use @code{}.
 2018-09-10 22:15:20 +02:00
Tobias Geerinckx-Rice cc12ac58a2
gnu: python-jedi: Update to 0.12.1. 
* gnu/packages/python.scm (python-jedi): Update to 0.12.1.
[synopsis, description]: Adjust to expanded functionality.
 2018-09-10 22:15:19 +02:00
Tobias Geerinckx-Rice 7a6eaf5ca9
gnu: python-parso: Update to 0.3.1. 
* gnu/packages/python.scm (python-parso): Update to 0.3.1.
 2018-09-10 22:15:19 +02:00
Marius Bakke 242f2711bd
gnu: python-pyzmq: Update to 17.1.2. 
* gnu/packages/python.scm (python-pyzmq): Update to 17.1.2.
 2018-09-10 20:38:48 +02:00
Marius Bakke b8d165b18a
gnu: python-traitlets: Update to 4.3.2. 
* gnu/packages/python.scm (python-traitlets): Update to 4.3.2.
[native-inputs]: Remove PYTHON-NOSE and PYTHON-MOCK.  Add PYTHON-PYTEST.
[arguments]: Adjust check phase accordingly.
[properties]: New field.
(python2-traitlets)[propagated-inputs]: Add PYTHON2-ENUM34.
 2018-09-10 20:38:48 +02:00
Marius Bakke 9fc445b1a5
gnu: python-pexpect: Update to 4.6.0. 
* gnu/packages/python.scm (python-pexpect): Update to 4.6.0.
 2018-09-10 20:38:48 +02:00
Marius Bakke fc449407fe
gnu: python-debian: Update home page. 
* gnu/packages/python.scm (python-debian)[home-page]: Set to source
repository.
 2018-09-10 20:27:42 +02:00
Marius Bakke 418ec0adc9
gnu: python-libarchive-c: Update to 2.8. 
* gnu/packages/python.scm (python-libarchive-c): Update to 2.8.
[arguments]: Replace 'check' phase.
[native-inputs]: Add PYTHON-MOCK and PYTHON-PYTEST.
 2018-09-10 20:27:42 +02:00
Marius Bakke ba0052e8ae
gnu: python-tlsh: Update to 3.4.5. 
* gnu/packages/python.scm (python-tlsh): Update to 3.4.5.
 2018-09-10 20:27:42 +02:00
Ricardo Wurmus a6a7156aa9
gnu: Add python-dask. 
* gnu/packages/python.scm (python-dask): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 035989c403
gnu: Add python-partd. 
* gnu/packages/python.scm (python-partd): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus c27a9d8a88
gnu: Add python-blosc. 
* gnu/packages/python.scm (python-blosc): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus b2b8226244
gnu: Add python-locket. 
* gnu/packages/python.scm (python-locket): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 930ba31d20
gnu: Add python-cloudpickle. 
* gnu/packages/python.scm (python-cloudpickle): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 3d352cb9cf
gnu: Add python-sortedcontainers. 
* gnu/packages/python.scm (python-sortedcontainers): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 098cb1e9c4
gnu: Add python-cytoolz. 
* gnu/packages/python.scm (python-cytoolz): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 7cd51cd28e
gnu: Add python-toolz. 
* gnu/packages/python.scm (python-toolz): New variable.
 2018-09-10 16:50:25 +02:00
Ricardo Wurmus 943a4cb601
gnu: Add python-multiprocess. 
* gnu/packages/python.scm (python-multiprocess): New variable.
 2018-09-10 16:50:25 +02:00
Ricardo Wurmus fc62567251
gnu: Add python-dill. 
* gnu/packages/python.scm (python-dill): New variable.
 2018-09-10 16:50:25 +02:00
Tobias Geerinckx-Rice 82d5c7c6de
gnu: python-typing: Update to 3.6.6. 
* gnu/packages/python.scm (python-typing): Update to 3.6.6.
 2018-09-10 15:29:13 +02:00
Marius Bakke 4d19a14e77
gnu: python-llfuse: Update to 1.3.5. 
* gnu/packages/python.scm (python-llfuse): Update to 1.3.5.
 2018-09-10 14:29:40 +02:00
Marius Bakke 073705e725
gnu: python2-contextlib2: Use 'invoke' instead of 'system*'. 
* gnu/packages/python.scm (python2-contextlib2)[arguments]: Use INVOKE.
 2018-09-10 14:28:42 +02:00
Marius Bakke d06940882d
gnu: python2-contextlib2: Update to 0.5.5. 
* gnu/packages/python.scm (python2-contextlib2): Update to 0.5.5.
[native-inputs]: Add PYTHON2-UNITTEST2.
 2018-09-10 14:25:25 +02:00
Marius Bakke d4c04e509b
gnu: Remove python-contextlib2. 
This package is part of the Python standard library since version 3.2.

* gnu/packages/python.scm (python-contextlib2): Rename to ...
(python2-contextlib2): ... this.  Remove previous incarnation.
[arguments]: Set #:python.
 2018-09-10 14:24:34 +02:00
Marius Bakke 589aca1c18
gnu: Python: Delete broken test. 
* gnu/packages/python.scm (python-3.7)[source](snippet): Delete test which
may crash some systems.
 2018-09-09 17:59:36 +02:00
Marius Bakke 6cd715adef
gnu: python-scipy: Update to 1.1.0. 
* gnu/packages/python.scm (python-scipy): Update to 1.1.0.
 2018-09-09 17:59:35 +02:00
Marius Bakke 0aeb134850
Merge branch 'master' into core-updates 2018-09-09 17:40:35 +02:00
Ricardo Wurmus 4fd2622df8
gnu: python-tables: Update to 3.4.4. 
* gnu/packages/python.scm (python-tables): Update to 3.4.4.
 2018-09-05 12:01:23 +02:00
Marius Bakke 70dc8db8e7
Merge branch 'master' into core-updates 2018-09-03 19:20:06 +02:00
Marius Bakke 1f7d142000
gnu: python-matplotlib: Update to 2.2.3. 
* gnu/packages/python.scm (python-matplotlib): Update to 2.2.3.
 2018-09-03 19:09:00 +02:00
Ricardo Wurmus 02ddafef55
gnu: python-scipy: Disable broken tests. 
* gnu/packages/python.scm (python-scipy)[arguments]: Skip two broken tests.
 2018-09-03 13:49:32 +02:00
Marius Bakke 53b7c9716e
gnu: python-waf: Update to 2.0.10. 
* gnu/packages/python.scm (python-waf): Update to 2.0.10.
 2018-09-01 12:59:00 +02:00
Ricardo Wurmus 9ce2f07ab6
gnu: python-matplotlib: Use python-pyqt-without-qtwebkit. 
* gnu/packages/python.scm (python-matplotlib)[propagated-inputs]: Replace
python-pyqt with python-pyqt-without-qtwebkit.
 2018-08-31 16:37:56 +02:00
Ricardo Wurmus 22b770ce00
gnu: Add python-anndata. 
* gnu/packages/python.scm (python-anndata): New variable.
 2018-08-29 17:06:13 +02:00
Ricardo Wurmus d8b8eb3ff5
gnu: Add python-numba. 
* gnu/packages/python.scm (python-numba): New variable.
 2018-08-29 17:06:13 +02:00
Tobias Geerinckx-Rice f882d7c7c5
gnu: python-apipkg: Update home page. 
* gnu/packages/python.scm (python-apipkg)[home-page]: Update.
 2018-08-28 22:31:00 +02:00
Marius Bakke 61fca0fd22
Merge branch 'master' into core-updates 2018-08-28 01:22:24 +02:00
Leo Famulari 6635a3cc7f
gnu: python-pygit2: Update to 0.26.4. 
* gnu/packages/python.scm (python-pygit2, python2-pygit2): Update to 0.26.4.
[source]: Remove 'python-pygit2-disable-network-tests.patch'.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-27 15:13:46 -04:00
Marius Bakke 57dac1ee93
gnu: python-cairocffi: Update to 0.9.0. 
* gnu/packages/python.scm (python-cairocffi): Update to 0.9.0.
[source](uri): Use PYPI-URI.
[native-inputs]: Add PYTHON-PYTEST-COV and PYTHON-PYTEST-RUNNER.
[arguments]: Remove #:tests? and outdated comment.
 2018-08-27 20:40:17 +02:00
Marius Bakke a1d3874293
gnu: python-xcffib: Update to 0.6.0. 
* gnu/packages/python.scm (python-xcffib): Update to 0.6.0.
 2018-08-27 20:40:16 +02:00
Marius Bakke b651a5ab35
gnu: python-pandas: Update to 0.23.4. 
* gnu/packages/python.scm (python-pandas): Update to 0.23.4.
[arguments]: Disable "--strict-data-files" pytest option.  Delete one more
test.  Adjust pytest invocation to be more verbose and skip very slow tests.
 2018-08-27 18:28:29 +02:00
Marius Bakke 4053585e3f
gnu: python-beautifulsoup4: Update to 4.6.3. 
* gnu/packages/python.scm (python-beautifulsoup4): Update to 4.6.3.
 2018-08-27 17:13:07 +02:00
Marius Bakke 397334d977
gnu: python-pillow: Update to 5.2.0. 
* gnu/packages/patches/python-pillow-fix-failing-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pillow): Update to 5.2.0.
[source](patches, patch-flags): Remove.
[native-inputs]: Replace PYTHON-NOSE with PYTHON-PYTEST.
[arguments]: Adjust custom check phase accordingly.
 2018-08-27 16:49:05 +02:00
Marius Bakke d7c82e8e03
gnu: python-numpy: Update to 1.15.1. 
* gnu/packages/python.scm (python-numpy): Update to 1.15.1.
[native-inputs]: Replace PYTHON-NOSE with PYTHON-PYTEST.
[arguments]: Set PATH before running tests.  Use INVOKE.
 2018-08-27 16:05:11 +02:00
Marius Bakke 839167ff9d
Merge branch 'staging' into core-updates 2018-08-25 16:44:07 +02:00
Paul Garlick 414f620fbb
gnu: python-pkgconfig: Enable tests. 
* gnu/packages/python.scm (python-pkgconfig)[arguments]: Replace 'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-22 15:13:52 -04:00
Paul Garlick 5fab62527c
gnu: python-pkgconfig: Update to 1.3.1. 
* gnu/packages/python.scm (python-pkgconfig): Update to 1.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-22 15:13:49 -04:00
Marius Bakke 00ffbfd394
gnu: python-idna: Update to 2.7. 
* gnu/packages/python.scm (python-idna): Update to 2.7.
 2018-08-22 18:01:10 +02:00
Marius Bakke 25febeedc6
gnu: python-numpydoc: Update to 0.8.0. 
* gnu/packages/python.scm (python-numpydoc): Update to 0.8.0.
[source](uri): Use PYPI-URI.
[source](snippet): Remove.
 2018-08-21 17:24:31 +02:00
Marius Bakke 7eab5e7377
gnu: python-greenlet: Update to 0.4.14. 
* gnu/packages/python.scm (python-greenlet): Update to 0.4.14.
 2018-08-21 17:24:31 +02:00
Marius Bakke 3bbfc451ed
gnu: python-sphinx: Update to 1.7.7. 
* gnu/packages/openstack.scm (python-mox3, python-openstackdocstheme,
  python-stevedore, python-oslo.config)[native-inputs]: Change
PYTHON-SPHINX-1.6 to PYTHON-SPHINX.
* gnu/packages/python.scm (python-sphinx): Update to 1.7.7.
[arguments]: Incorporate changes from the 1.6 variant.  Disable two tests.
[propagated-inputs]: Add PYTHON-PACKAGING and PYTHON-SPHINXCONTRIB-WEBSUPPORT.
[native-inputs]: Add IMAGEMAGICK and PYTHON-PYTEST.
(python2-sphinx)[propagated-inputs]: Add PYTHON2-TYPING.
(python-sphinx-1.6, python2-sphinx-1.6, python-sphinx-1.5.3): Remove variables.
(python-matplotlib-documentation)[native-inputs]: Change from
PYTHON-SPHINX-1.6 to PYTHON-SPHINX.
 2018-08-21 17:24:31 +02:00
Marius Bakke f70785a4c0
gnu: python-sphinxcontrib-websupport: Add a python2 variant. 
* gnu/packages/python.scm (python2-sphinxcontrib-websupport): New public variable.
 2018-08-21 17:24:31 +02:00
Marius Bakke f65ef00556
gnu: python-sphinxcontrib-websupport: Update to 1.1.0. 
* gnu/packages/python.scm (python-sphinxcontrib-websupport): Update to 1.1.0.
 2018-08-21 17:24:31 +02:00
Marius Bakke 5f2707a255
gnu: python-sphinxcontrib-websupport: Disable tests. 
* gnu/packages/python.scm (python-sphinxcontrib-websupport)[arguments]: New
field.
[native-inputs, inputs]: Remove.
 2018-08-21 17:24:31 +02:00
Marius Bakke efada0946d
gnu: python-jinja2: Update to 2.10. 
* gnu/packages/python.scm (python-jinja2): Update to 2.10.
 2018-08-21 17:24:30 +02:00
Marius Bakke 88166588a0
gnu: python-babel: Run the tests. 
* gnu/packages/python.scm (python-babel)[native-inputs]: Add PYTHON-FREEZEGUN
and PYTHON-PYTEST.
[arguments]: Replace 'check' phase.  Remove #:tests?.
 2018-08-21 17:24:30 +02:00
Marius Bakke b3a21b2cf9
gnu: python-babel: Update to 2.6.0. 
* gnu/packages/python.scm (python-babel): Update to 2.6.0.
 2018-08-21 17:24:30 +02:00
Marius Bakke 632900f586
gnu: python-packaging: Run the tests. 
* gnu/packages/python.scm (python-packaging)[arguments]: Override 'check' phase.
 2018-08-21 17:24:30 +02:00
Marius Bakke c52ff2ed76
gnu: python-packaging: Update to 17.1. 
* gnu/packages/python.scm (python-packaging): Update to 17.1.
 2018-08-21 17:24:30 +02:00
Marius Bakke 26aef5e956
gnu: python-imagesize: Fix typo. 
* gnu/packages/python.scm (python-imagesize)[synopsis]: Remove stray character.
 2018-08-21 17:24:29 +02:00
Marius Bakke 4c36fc7051
gnu: python-imagesize: Update to 1.0.0. 
* gnu/packages/python.scm (python-imagesize): Update to 1.0.0.
[arguments]: Remove.
 2018-08-21 17:24:29 +02:00
Marius Bakke 9764dac511
gnu: python-markupsafe: Update to 1.0. 
* gnu/packages/python.scm (python-markupsafe): Update to 1.0.
 2018-08-21 17:24:29 +02:00
Marius Bakke 827509a30c
gnu: python-olefile: Update to 0.45.1. 
* gnu/packages/python.scm (python-olefile): Update to 0.45.1.
 2018-08-21 17:24:28 +02:00
Marius Bakke d76cd3defd
gnu: python-lxml: Update to 4.2.4. 
* gnu/packages/python.scm (python-lxml): Update to 4.2.4.
 2018-08-21 17:24:28 +02:00
Marius Bakke f6cd3f7970
gnu: python-ipaddress: Update to 1.0.22. 
* gnu/packages/python.scm (python-ipaddress): Update to 1.0.22.
 2018-08-21 17:24:28 +02:00
Marius Bakke c69d231c2a
gnu: python-pycparser: Update to 2.18. 
* gnu/packages/python.scm (python-pycparser): Update to 2.18.
 2018-08-21 17:24:28 +02:00
Marius Bakke b3751f9cea
gnu: python-setuptools-scm: Update to 3.1.0. 
* gnu/packages/python.scm (python-setuptools-scm): Update to 3.1.0.
 2018-08-21 17:24:28 +02:00
Marius Bakke e241f9a020
gnu: python-more-itertools: Update to 4.3.0. 
* gnu/packages/python.scm (python-more-itertools): Update to 4.3.0.
 2018-08-21 17:24:28 +02:00
Marius Bakke 7f5d3445af
gnu: python-scandir: Update to 1.9.0. 
* gnu/packages/python.scm (python-scandir): Update to 1.9.0.
 2018-08-21 17:24:28 +02:00
Marius Bakke e2da8bcd9e
gnu: python-pytest: Update to 3.7.2. 
* gnu/packages/check.scm (python-pytest): Update to 3.7.2.
(python2-pytest)[propagated-inputs]: Add PYTHON2-PATHLIB.
(python2-pytest-bootstrap)[propagated-inputs]: Add PYTHON-PATHLIB2-BOOTSTRAP.
* gnu/packages/python.scm (python2-pathlib2-bootstrap): New public variable.
 2018-08-21 17:24:28 +02:00
Marius Bakke 27885fcc26
gnu: python-pluggy: Update to 0.7.1. 
* gnu/packages/python.scm (python-pluggy): Update to 0.7.1.
[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
 2018-08-21 17:24:27 +02:00
Tobias Geerinckx-Rice 20b5b97381
gnu: python-rpy2: Update to 2.9.4. 
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4.
[arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM*
now that we can.
 2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice db09a450d2
gnu: python-rpy2: Update home page. 
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
 2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice 52773e5cf4
gnu: python-py: Use HTTPS home page. 
* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
 2018-08-20 16:36:20 +02:00
Marius Bakke df570bf271
Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
Marius Bakke 37d203985e
gnu: python-cython: Disable tests that fail on armhf. 
* gnu/packages/python.scm (python-cython)[arguments]: On armhf-linux, add
phase to disable two tests.
 2018-08-16 20:33:28 +02:00
Ricardo Wurmus e9e9783e0a
gnu: Add python-argparse-manpage. 
* gnu/packages/python.scm (python-argparse-manpage): New variable.
 2018-08-16 17:04:10 +02:00
Tobias Geerinckx-Rice a1c86d1db4
gnu: python-txamqp: Update to 0.8.2. 
* gnu/packages/python.scm (python-txamqp): Update to 0.8.2.
 2018-08-15 20:10:22 +02:00
Ricardo Wurmus b86c019efb
Merge branch 'staging' into core-updates 2018-08-13 20:39:32 +02:00
Tobias Geerinckx-Rice 247d4e7271
gnu: python-pep8: Use HTTPS home page. 
Also add a comment about 1.7.1. This doesn't warrant a changelog entry,
so you never read this.

* gnu/packages/python.scm (python-pep8)[home-page]: Use HTTPS.
 2018-08-13 01:51:47 +02:00
Ricardo Wurmus bc731eada6
gnu: python-flake8: Fix build. 
* gnu/packages/python.scm (python-flake8)[arguments]: Add build phases
"delete-broken-test" and "fix-problem-with-pycodestyle".
[propagated-inputs]: Remove python-setuptools.
 2018-08-08 23:10:26 +02:00
Ricardo Wurmus 5417c92877
gnu: python-flake8: Use INVOKE. 
* gnu/packages/python.scm (python-flake8)[arguments]: Use INVOKE and always
return #T.
 2018-08-08 23:10:19 +02:00
Ricardo Wurmus 2df4ecd61d
gnu: python-dbus: Update to 1.2.8. 
* gnu/packages/python.scm (python-dbus): Update to 1.2.8.
[inputs]: Replace "python" with "python-wrapper".
 2018-08-08 22:08:39 +02:00
Ricardo Wurmus cfe62fb22b
gnu: python-cython: Remove failing test. 
* gnu/packages/python.scm (python-cython)[arguments]: Remove failing test.
 2018-08-08 22:08:32 +02:00
Leo Famulari ccdc1690bd
gnu: Cython: Update to 0.28.4. 
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.28.4.
[arguments]: Use invoke.
 2018-08-08 22:08:24 +02:00
Marius Bakke 6af7c2b178
Merge branch 'master' into staging 2018-08-07 00:50:25 +02:00
Ricardo Wurmus 0fb0db0022
gnu: python-scipy: Only run default tests. 
* gnu/packages/python.scm (python-scipy)[arguments]: Only run the default test
suite.  The full test suite is too expensive and brittle.
 2018-08-03 15:24:40 +02:00
Marius Bakke 4214066d45
Merge branch 'master' into core-updates 2018-08-01 15:53:17 +02:00
Marius Bakke 869250809b
Merge branch 'master' into staging 2018-07-30 18:08:28 +02:00
Christopher Baines 6465497fb9
gnu: Remove duplicated python-pafy. 
It was first added in 02f8f804f0, then again in
2dd12924cf.

* gnu/packages/python.scm (python-pafy): Remove duplicated package definition.
 2018-07-29 17:57:53 +01:00
Marius Bakke 20b0aaf986
gnu: python-fonttools: Update license. 
This is a follow-up to commit 4696368108.

* gnu/packages/python.scm (python-fonttools)[license]: Change to EXPAT (since 3.21).
 2018-07-28 23:37:52 +02:00
Efraim Flashner a4b7a1cb4a
gnu: python-3.7: Update deleted tests. 
* gnu/packages/python.scm (python-3.7)[source]: Update the list of files
to be deleted in the snippet.
 2018-07-28 21:56:28 +03:00
Marius Bakke 1af575f04d
Merge branch 'master' into staging 2018-07-28 18:34:59 +02:00
Marius Bakke 4696368108
gnu: python-fonttools: Update to 3.28.0. 
* gnu/packages/python.scm (python-fonttools): Update to 3.28.0.
[arguments]: Remove.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
 2018-07-28 15:52:30 +02:00
Marius Bakke 1166b9c795
gnu: Add python-invoke. 
* gnu/packages/python.scm (python-invoke, python2-invoke): New public variables.
 2018-07-28 15:52:29 +02:00