Commit Graph

25606 Commits

Author SHA1 Message Date
Hartmut Goebel c828969036
build: Use overlayfs instead of unionfs.
Overlayfs is part of the kernel, while unionfs needs FUSE.  This also reduces
the size of the initrd by ca. 4.3% (487K).

* gnu/build/linux-boot.scm (mount-root-file-system): Remove optional parameter
  "unionfs"; mount using overlayfs instead of unionfs; new directory layout
  requied by overlayfs; update documentation.
  [mark-as-not-killable]: Remove now unused function

* gnu/system/linux-initrd.scm (file-system-packages): Remove now unused
  packages "unionfs-fuse/static" and thus unused related 'if'.
  (linux-modules): Replace "fuse" by "overlay".
2017-11-08 18:23:05 +01:00
Ricardo Wurmus 34260a10d7
gnu: miso: Use pypi-uri.
* gnu/packages/bioinformatics.scm (miso)[source]: Use pypi-uri.
2017-11-08 17:41:08 +01:00
Ricardo Wurmus e5c17b8d9d
gnu: Add r-vcd.
* gnu/packages/cran.scm (r-vcd): New variable.
2017-11-08 17:34:35 +01:00
Ricardo Wurmus 018cf270a3
gnu: Add r-laeken.
* gnu/packages/cran.scm (r-laeken): New variable.
2017-11-08 17:34:11 +01:00
Ricardo Wurmus 308c08d371
doc: Move paragraph about signature verification to the top.
* doc/contributing.texi (Submitting Patches): Remind contributors to verify
cryptographic signatures at the very beginning.
2017-11-08 17:19:45 +01:00
Ricardo Wurmus 697e341e74
gnu: fastcap: Use texlive-tiny.
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive with
texlive-tiny.
[arguments]: Fix indentation; set HOME in "make-pdf" phase to avoid font
errors with texlive-tiny.
2017-11-08 17:15:24 +01:00
Ricardo Wurmus 7e3aca2b78
gnu: librecad: Fix build.
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"patch-boost-error".
2017-11-08 16:21:54 +01:00
Ricardo Wurmus b72b42cf02
gnu: Add r-performanceanalytics.
* gnu/packages/cran.scm (r-performanceanalytics): New variable.
2017-11-08 16:21:54 +01:00
Ricardo Wurmus 3699383e6f
gnu: Add r-xts.
* gnu/packages/cran.scm (r-xts): New variable.
2017-11-08 16:21:53 +01:00
Ricardo Wurmus 5a80c15c14
gnu: Remove "open source" from descriptions.
All software in Guix is Free Software.

* gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string.
* gnu/packages/firmware.scm (seabios)[description]: Likewise.
* gnu/packages/libupnp.scm (libupnp)[description]: Likewise.
* gnu/packages/maths.scm (cubicle)[description]: Likewise.
* gnu/packages/mingw.scm (mingw-w64)[description]: Likewise.
* gnu/packages/game-development.scm (openmw)[description]: Likewise.
[synopsis]: Remove "Free software".
2017-11-08 16:21:53 +01:00
Ricardo Wurmus 88fb156288
gnu: pcb: Update to 4.0.2.
* gnu/packages/engineering.scm (pcb): Update to 4.0.2.
[arguments]: Add build phase "fix-check-for-display".
2017-11-08 16:21:53 +01:00
Efraim Flashner c8b38f8ea6
gnu: time: Update license.
* gnu/packages/time.scm (time)[license]: Change to gpl3+.
2017-11-08 10:52:09 +02:00
Efraim Flashner dd00e0919f
gnu: time: Update to 1.8.
* gnu/packages/time.scm (time): Update to 1.8.
[arguments]: Remove custom 'configure phase.
2017-11-08 10:49:19 +02:00
Ricardo Wurmus 12a24ee878
gnu: Add glusterfs.
* gnu/packages/file-systems.scm (glusterfs): New variable.
2017-11-07 23:32:46 +01:00
Ricardo Wurmus 2e648d2bc4
gnu: r-prabclus: Update description.
* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
2017-11-07 23:32:46 +01:00
Ricardo Wurmus 14e5f6b20a
gnu: r-fdrtool: Update description.
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
2017-11-07 23:32:46 +01:00
Ricardo Wurmus 738dda8330
gnu: Add r-bbmle.
* gnu/packages/cran.scm (r-bbmle): New variable.
2017-11-07 23:32:46 +01:00
Ricardo Wurmus 7b0569c0a9
gnu: Add r-rsofia.
* gnu/packages/cran.scm (r-rsofia): New variable.
2017-11-07 23:32:46 +01:00
Ricardo Wurmus c49102ecca
gnu: Add r-hitc.
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
2017-11-07 23:32:45 +01:00
Ricardo Wurmus 30eb4e37c8
gnu: Add r-fithic.
* gnu/packages/bioinformatics.scm (r-fithic): New variable.
2017-11-07 23:32:45 +01:00
Ricardo Wurmus fbf5440637
gnu: Add r-sushi.
* gnu/packages/bioinformatics.scm (r-sushi): New variable.
2017-11-07 23:32:45 +01:00
Ricardo Wurmus 9232cac410
gnu: Add r-vioplot.
* gnu/packages/cran.scm (r-vioplot): New variable.
2017-11-07 23:32:45 +01:00
Ricardo Wurmus 3a22732cd8
gnu: Add r-sm.
* gnu/packages/cran.scm (r-sm): New variable.
2017-11-07 23:32:45 +01:00
Ricardo Wurmus 2e4ce60e7c
gnu: Add r-gwascat.
* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
2017-11-07 23:32:44 +01:00
Ricardo Wurmus 4272000661
gnu: Add r-gviz.
* gnu/packages/bioinformatics.scm (r-gviz): New variable.
2017-11-07 23:32:44 +01:00
Ricardo Wurmus 794ff347a9
gnu: Add r-gqtlstats.
* gnu/packages/bioinformatics.scm (r-gqtlstats): New variable.
2017-11-07 23:32:44 +01:00
Ricardo Wurmus 7fd5f60b8f
gnu: Add r-hardyweinberg.
* gnu/packages/cran.scm (r-hardyweinberg): New variable.
2017-11-07 23:32:44 +01:00
Ricardo Wurmus 10e16fa93d
gnu: Add r-mice.
* gnu/packages/cran.scm (r-mice): New variable.
2017-11-07 23:32:44 +01:00
Ricardo Wurmus 66c39102e5
gnu: Add r-ldblock.
* gnu/packages/bioinformatics.scm (r-ldblock): New variable.
2017-11-07 23:32:44 +01:00
Ricardo Wurmus 15f98b0d23
gnu: Add r-erma.
* gnu/packages/bioinformatics.scm (r-erma): New variable.
2017-11-07 23:32:43 +01:00
Ricardo Wurmus 421c68e3f7
gnu: Add r-homo-sapiens.
* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
2017-11-07 23:32:43 +01:00
Ricardo Wurmus b52a866d14
gnu: Add r-org-hs-eg-db.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
2017-11-07 23:32:43 +01:00
Ricardo Wurmus dd5fc8b78e
gnu: Add r-snpstats.
* gnu/packages/bioinformatics.scm (r-snpstats): New variable.
2017-11-07 23:32:43 +01:00
Ricardo Wurmus e2b927993e
gnu: Add r-gqtlbase.
* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable.
2017-11-07 23:32:43 +01:00
Ricardo Wurmus 96a392a0b2
gnu: Add r-gprofiler.
* gnu/packages/bioinformatics.scm (r-gprofiler): New variable.
2017-11-07 23:32:42 +01:00
Ricardo Wurmus 60faf94597
gnu: Add r-ggbio.
* gnu/packages/bioinformatics.scm (r-ggbio): New variable.
2017-11-07 23:32:42 +01:00
Ricardo Wurmus 7af1f40373
gnu: Add r-biovizbase.
* gnu/packages/bioinformatics.scm (r-biovizbase): New variable.
2017-11-07 23:32:42 +01:00
Ricardo Wurmus 2f6f61fd8e
gnu: Add r-organismdbi.
* gnu/packages/bioinformatics.scm (r-organismdbi): New variable.
2017-11-07 23:32:42 +01:00
Ricardo Wurmus aa30ab5aee
gnu: Add r-ensembldb.
* gnu/packages/bioinformatics.scm (r-ensembldb): New variable.
2017-11-07 23:32:42 +01:00
Ricardo Wurmus 763e98103a
gnu: Add r-annotationfilter.
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
2017-11-07 23:32:42 +01:00
Ricardo Wurmus 04e2a2e969
gnu: Add r-dirichletmultinomial.
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): New variable.
2017-11-07 23:32:41 +01:00
Ricardo Wurmus 3af149f524
gnu: Add r-complexheatmap.
* gnu/packages/bioinformatics.scm (r-complexheatmap): New variable.
2017-11-07 23:32:41 +01:00
Ricardo Wurmus 902fb15d92
gnu: Add r-genomicfiles.
* gnu/packages/bioinformatics.scm (r-genomicfiles): New variable.
2017-11-07 23:32:41 +01:00
Marius Bakke cd215877a0
gnu: bdftopcf: Update to 1.1.
* gnu/packages/xorg.scm (bdftopcf): Update to 1.1.
[native-inputs]: Change from LIBXFONT to LIBXFONT2.
2017-11-07 23:29:23 +01:00
Marius Bakke d469bc09bd
gnu: feh: Update to 2.22.2.
* gnu/packages/image-viewers.scm (feh): Update to 2.22.2.
2017-11-07 22:16:27 +01:00
Jan Nieuwenhuizen 625492ee1a
gnu: gcc-4.7: Resurrect building with gcc-5.4.0.
* gnu/packages/patches/gcc-4-compile-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-4.7): Use it.
2017-11-07 22:03:51 +01:00
Rutger Helling a67f094671
gnu: Add websockify.
* gnu/packages/web.scm (websockify): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:56:42 +01:00
Gábor Boskovits 75d342ffa9
gnu: Add python-networkx2.
* gnu/packages/python.scm (python-networkx2, python2-networkx2): New variables.
* gnu/local.mk (dist_patch_DATA): Register 'python-networkx2-reproducible-build.patch'.
* gnu/packages/patches/python-networkx2-reproducible-build.patch: New file.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:17:20 +01:00
Gábor Boskovits 2b295f5a2f
gnu: Add python-pydot.
* gnu/packages/graphviz.scm (python-pydot, python2-pydot): New variables.

Modified-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:03:15 +01:00
Marius Bakke 38ad27da80
gnu: mercurial: Update to 4.4.1.
* gnu/packages/version-control.scm (mercurial): Update to 4.4.1.
2017-11-07 20:23:29 +01:00