Commit Graph

31262 Commits (79869f806432522d4d9b60f0af1294e8808514b6)

Author SHA1 Message Date
Ricardo Wurmus 6eab52e0dd
gnu: r-ggeffects: Update to 0.8.0.
* gnu/packages/cran.scm (r-ggeffects): Update to 0.8.0.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus de7631b278
gnu: r-slam: Update to 0.1-44.
* gnu/packages/cran.scm (r-slam): Update to 0.1-44.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 2652e2534f
gnu: r-refgenome: Update to 1.7.3.1.
* gnu/packages/cran.scm (r-refgenome): Update to 1.7.3.1.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus f0867a0e8b
gnu: r-findpython: Update to 1.0.4.
* gnu/packages/cran.scm (r-findpython): Update to 1.0.4.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 12502bf4e8
gnu: r-prediction: Update to 0.3.6.1.
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.1.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus fbd263cd4a
gnu: r-abn: Update to 1.3.
* gnu/packages/cran.scm (r-abn): Update to 1.3.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 1b1444012b
gnu: r-sjstats: Update to 0.17.3.
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.3.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 9df469a1d4
gnu: r-emmeans: Update to 1.3.1.
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.1.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 1afe56444e
gnu: r-glmmtmb: Update to 0.2.3.
* gnu/packages/cran.scm (r-glmmtmb): Update to 0.2.3.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 1417d5f1d5
gnu: r-rio: Update to 0.5.16.
* gnu/packages/cran.scm (r-rio): Update to 0.5.16.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 962304c31c
gnu: r-arules: Update to 1.6-2.
* gnu/packages/cran.scm (r-arules): Update to 1.6-2.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus f2fc34f241
gnu: r-fnn: Update to 1.1.2.2.
* gnu/packages/cran.scm (r-fnn): Update to 1.1.2.2.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus f0fe1a5a45
gnu: r-shinyace: Update to 0.3.3.
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.3.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 5f1f11049f
gnu: r-cubature: Update to 2.0.3.
* gnu/packages/cran.scm (r-cubature): Update to 2.0.3.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 7abb15f2bb
gnu: r-tseries: Update to 0.10-46.
* gnu/packages/cran.scm (r-tseries): Update to 0.10-46.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 9d83132757
gnu: r-statnet-common: Update to 4.2.0.
* gnu/packages/cran.scm (r-statnet-common): Update to 4.2.0.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 7e9e9c9c46
gnu: r-tinytex: Update to 0.10.
* gnu/packages/cran.scm (r-tinytex): Update to 0.10.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus fc00a1f0fc
gnu: r-pillar: Update to 1.3.1.
* gnu/packages/cran.scm (r-pillar): Update to 1.3.1.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 111516f9d6
gnu: r-gclus: Update to 1.3.2.
* gnu/packages/cran.scm (r-gclus): Update to 1.3.2.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus ed46a05c75
gnu: r-laeken: Update to 0.5.0.
* gnu/packages/cran.scm (r-laeken): Update to 0.5.0.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus fc74de42da
gnu: r-ddalpha: Update to 1.3.8.
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.8.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 221b3b164d
gnu: r-rmysql: Update to 0.10.16.
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.16.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 1c6d199ee8
gnu: r-mitml: Update to 0.3-7.
* gnu/packages/cran.scm (r-mitml): Update to 0.3-7.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 5703991841
gnu: r-recipes: Add missing input.
* gnu/packages/cran.scm (r-recipes)[propagated-inputs]: Add r-withr.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 77f97229c9
gnu: r-dimred: Add missing input.
* gnu/packages/cran.scm (r-dimred)[propagated-inputs]: Add r-magrittr.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 8f88701491
gnu: r-lava: Update to 1.6.4.
* gnu/packages/cran.scm (r-lava): Update to 1.6.4.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 397dba01c6
gnu: r-powerlaw: Update to 0.70.2.
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.2.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 72c4987506
gnu: r-circlize: Update to 0.4.5.
* gnu/packages/cran.scm (r-circlize): Update to 0.4.5.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 422dea1774
gnu: r-ps: Update to 1.3.0.
* gnu/packages/cran.scm (r-ps): Update to 1.3.0.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus dcf89cc0cf
gnu: r-haven: Update to 2.0.0.
* gnu/packages/cran.scm (r-haven): Update to 2.0.0.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 69aad34ae0
gnu: r-feather: Update to 0.3.2.
* gnu/packages/cran.scm (r-feather): Update to 0.3.2.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 1add168ab5
gnu: r-htmltable: Update to 1.13.1.
* gnu/packages/cran.scm (r-htmltable): Update to 1.13.1.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 37349c717e
gnu: r-httpuv: Update to 1.4.5.1.
* gnu/packages/cran.scm (r-httpuv): Update to 1.4.5.1.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 0c025a7f79
gnu: r-clipr: Update to 0.5.0.
* gnu/packages/cran.scm (r-clipr): Update to 0.5.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 2e4fc4ac62
gnu: r-caret: Update to 6.0-81.
* gnu/packages/statistics.scm (r-caret): Update to 6.0-81.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus aa72d7f7f5
gnu: r-quantreg: Update to 5.38.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.38.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 9b7df80b9b
gnu: r-rcppeigen: Update to 0.3.3.5.0.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.5.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus bcc17f7f11
gnu: r-rrcov: Update to 1.4-7.
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-7.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 70ee5ab137
gnu: r-cowplot: Update to 0.9.4.
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.4.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 7213ef07c6
gnu: r-rann: Update to 2.6.1.
* gnu/packages/statistics.scm (r-rann): Update to 2.6.1.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 2c8594d963
gnu: r-sfsmisc: Update to 1.1-3.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-3.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 54ebdf6f74
gnu: r-rmarkdown: Update to 1.11.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.11.
[propagated-inputs]: Remove r-rprojroot.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus fb45934202
gnu: r-rstudioapi: Update to 0.9.0.
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.9.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 8f49d99a84
gnu: r-git2r: Update to 0.24.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.24.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus c12e429348
gnu: r-httr: Update to 1.4.0.
* gnu/packages/statistics.scm (r-httr): Update to 1.4.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 02c89c5812
gnu: r-commonmark: Update to 1.7.
* gnu/packages/statistics.scm (r-commonmark): Update to 1.7.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus fe8c44502b
gnu: r-checkmate: Update to 1.9.0.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.0.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus ca4861c602
gnu: r-backports: Update to 1.1.3.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.3.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 23347dc353
gnu: r-dbplyr: Update to 1.3.0.
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.3.0.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus f12ed3664d
gnu: r-tibble: Update to 2.0.0.
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.0.
[propagated-inputs]: Add r-fansi and r-pkgconfig.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus c668a95861
gnu: r-rlang: Update to 0.3.1.
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.1.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 495866a9d7
gnu: r-knitr: Update to 1.21.
* gnu/packages/statistics.scm (r-knitr): Update to 1.21.
[propagated-inputs]: Add r-xfun.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus bf3aded0cf
gnu: r-markdown: Update to 0.9.
* gnu/packages/statistics.scm (r-markdown): Update to 0.9.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus eae93bd3f2
gnu: r-bh: Update to 1.69.0-1.
* gnu/packages/statistics.scm (r-bh): Update to 1.69.0-1.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus b6e27673e6
gnu: r-pheatmap: Update to 1.0.12.
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.12.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus ca2bc7e037
gnu: r-mgcv: Update to 1.8-26.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-26.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 60f1bce09f
gnu: r-codetools: Update to 0.2-16.
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-16.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 3dbd87f504
gnu: r-class: Update to 7.3-15.
* gnu/packages/statistics.scm (r-class): Update to 7.3-15.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 35cf4874cc
gnu: r-survival: Update to 2.43-3.
* gnu/packages/statistics.scm (r-survival): Update to 2.43-3.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 11a36548d9
gnu: r-argparse: Update to 2.0.0.
* gnu/packages/cran.scm (r-argparse): Update to 2.0.0.
[propagated-inputs]: Add r-r6; remove r-proto.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 527c605598
gnu: r-callr: Update to 3.1.1.
* gnu/packages/cran.scm (r-callr): Update to 3.1.1.
[propagated-inputs]: Remove r-base64enc.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus b140569e18
gnu: r-readxl: Update to 1.2.0.
* gnu/packages/cran.scm (r-readxl): Update to 1.2.0.
[propagated-inputs]: Add r-progress.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 0aad198e2b
gnu: r-pracma: Update to 2.2.2.
* gnu/packages/maths.scm (r-pracma): Update to 2.2.2.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 44c69a536e
gnu: r-rcpparmadillo: Update to 0.9.200.5.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.5.0.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 0e87bf0177
gnu: r-processx: Update to 3.2.1.
* gnu/packages/cran.scm (r-processx): Update to 3.2.1.
[propagated-inputs]: Remove r-assertthat, r-crayon, and r-testthat.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 2766d3436a
gnu: r-sjlabelled: Update to 1.0.16.
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.16.
[propagated-inputs]: Remove r-tibble and r-tidyselect.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 813d9c51e3
gnu: r-broom: Update to 0.5.1.
* gnu/packages/cran.scm (r-broom): Update to 0.5.1.
[propagated-inputs]: Add r-generics.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 25c67ecfc6
gnu: Add r-generics.
* gnu/packages/cran.scm (r-generics): New variable.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 646e1ef059
gnu: r-curl: Update to 3.3.
* gnu/packages/cran.scm (r-curl): Update to 3.3.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus ef91530362
gnu: r-readr: Update to 1.3.1.
* gnu/packages/statistics.scm (r-readr): Update to 1.3.1.
[propagated-inputs]: Add r-clipr and r-crayon.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 48102ce123
gnu: r-mvabund: Update to 4.0.1.
* gnu/packages/cran.scm (r-mvabund): Update to 4.0.1.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 04a18a81ae
gnu: r-writexl: Update to 1.1.
* gnu/packages/cran.scm (r-writexl): Update to 1.1.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus a2315c6702
gnu: r-jsonlite: Update to 1.6.
* gnu/packages/cran.scm (r-jsonlite): Update to 1.6.
2019-01-12 23:35:11 +01:00
Kei Kebreau ea600ff709
gnu: python-pillow: Update homepage.
* gnu/packages/python.scm (python-pillow)[homepage]: Update URL.
2019-01-12 16:39:26 -05:00
Kei Kebreau acbf312573
gnu: python-pillow: Update to 5.4.0
* gnu/packages/python.scm (python-pillow): Update to 5.4.0.
[arguments]: Add 'patch-ldconfig' phase.
2019-01-12 16:38:36 -05:00
Ricardo Wurmus 146c6b62bf
gnu: Sort package modules in (gnu packages guile).
* gnu/packages/guile.scm: Sort list of gnu/packages modules.
2019-01-12 12:14:31 +01:00
Ricardo Wurmus 7d8baff97b
gnu: impressive: Update to 0.12.0.
* gnu/packages/pdf.scm (impressive): Update to 0.12.0.
2019-01-12 12:14:31 +01:00
Ricardo Wurmus 24155bf40d
gnu: Move Java compression packages to new module.
* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable.
(java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz):
Move these variables from here...
* gnu/packages/java-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module
references.
2019-01-12 12:14:28 +01:00
guy fleury iteriteka 1704367719
gnu: Add Bochs.
* gnu/packages/virtualization.scm (bochs): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-11 17:09:20 -05:00
Leo Famulari 81c64748ba
gnu: Stellarium: Update to 0.18.3.
* gnu/packages/astronomy.scm (stellarium): Update to 0.18.3.
[arguments]: Skip a broken test.
2019-01-11 17:07:55 -05:00
Pierre Neidhardt 1ac0c1b899
gnu: opendht: Make argon2 a propagated input so that its .pc is found.
* gnu/packages/networking.scm (opendht)[inputs]: Remove argon2.
[propagated-inputs]: Add it here.
2019-01-11 19:48:00 +01:00
Pierre Neidhardt e0fa641380
gnu: opendht: Use jsoncpp and restbed.
* gnu/packages/crypto.scm (opendht): Move definition to networking.scm.
* gnu/packages/networking.scm (opendht)[inputs]: Add jsoncpp and restbed.
2019-01-11 19:48:00 +01:00
Pierre Neidhardt 362fba83dd
gnu: Add restbed.
* gnu/packages/networking.scm (restbed): New variable.
2019-01-11 19:48:00 +01:00
Pierre Neidhardt 50e1843b3a
gnu: libupnp: Update to 1.6.25.
* gnu/packages/upnp.scm (libupnp): Update to 1.6.25.
2019-01-11 19:48:00 +01:00
Hartmut Goebel 46b082f97f
gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs.
Using LIBRARY_PATH was introduced in
16b8aff85b, but is wrong since
this variable is used by the compiler (gcc) at link time.

* gnu/packages/patches/kinit-kdeinit-libpath.patch: Change
  LIBRARY_PATH to KDEINIT5_LIBRARY_PATH.
* gnu/packages/kde-frameworks.scm (kinit)[native-search-paths]:
  New field.
2019-01-11 16:35:52 +01:00
Jelle Licht 5a26f879c3
Revert "gnu: emacs-ghub: Update to 3.2.0."
This change should be applied once we update our magit package.

This reverts commit b96f0e6ff9.
2019-01-11 13:32:31 +01:00
Gabriel Hondet 88d7101798
gnu: Add emacs-general.
[[PGP Signed Part:Good signature from 31BC8105F659D425 Gabriel Hondet <gabrielhondet@gmail.com> (trust undefined) created at 2019-01-06T10:42:43+0100 using RSA]]
* gnu/packages/emacs.scm (emacs-general): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-11 12:14:38 +01:00
Rutger Helling cb2ad4f508
gnu: wine-staging: Hard-code vulkan loader.
* gnu/packages/wine.scm (wine-staging-patchset-data): Fix indentation.
* gnu/packages/wine.scm (wine-staging)[arguments]: Add 'wrap-executable phase.
* gnu/packages/wine.scm (wine64-staging)[arguments]: Add 'wrap-executable
phase. Copy the real wine-preloader instead of the wrapped version.
2019-01-11 11:15:13 +01:00
Ricardo Wurmus e7c6bc45ed
gnu: jamm: Remove broken "build" phase.
* gnu/packages/bioinformatics.scm (jamm)[arguments]: Remove "build" phase.
2019-01-11 06:08:43 +01:00
Leo Famulari adf0b482eb
gnu: gexiv2: Update to 0.10.10.
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.10.
2019-01-10 18:45:41 -05:00
Ricardo Wurmus d4d9a1ece0
gnu: Update texlive packages.
* guix/build-system/texlive.scm (%texlive-tag, %texlive-revision): Update to
texlive-2018.2, revision 49435.
* gnu/packages/tex.scm (texlive-dvips, texlive-generic-unicode-data,
texlive-generic-dehyph-exptl, texlive-generic-hyph-utf8, texlive-fontname,
texlive-fonts-cm, texlive-tex-plain, texlive-latex-base,
texlive-latex-graphics, texlive-latex-graphics, texlive-latex-oberdiek,
texlive-latex-tools, texlive-latex-l3kernel, texlive-latex-l3packages,
texlive-latex-fontspec, texlive-latex-amsmath, texlive-latex-amscls,
texlive-latex-babel, texlive-latex-cyrillic, texlive-latex-eqparbox,
texlive-latex-ifplatform, texlive-latex-etoolbox, texlive-latex-galois,
texlive-latex-polyglossia, texlive-tex-texinfo, texlive-latex-changebar,
texlive-latex-fancyhdr, texlive-latex-overpic, texlive-latex-parskip,
texlive-metapost, texlive-latex-ucs, texlive-generic-pdftex,
texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-koma-script,
texlive-generic-listofitems, texlive-bibtex, texlive-context-base): Update
hashes.
(texlive-latex-fontspec)[arguments]: Remove custom build target.
(texlive-latex-dinbrief)[arguments]: Add build phase "fix-encoding-error".
(texlive-latex-xkeyval): New variable.
(texlive-latex-pstool)[source]: Fetch from new location.
[build-system]: Use trivial-build-system.
[arguments]: Write simple builder.
[propagated-inputs]: Add texlive-latex-l3kernel, texlive-latex-tools, and
texlive-latex-xkeyval.
[synopsis]: Fix typo.
2019-01-10 22:43:09 +01:00
Kei Kebreau c954fe6622
gnu: irssi: Update to 1.1.2 [fixes CVE-2019-5882].
* gnu/packages/irc.scm (irssi): Update to 1.1.2.
2019-01-10 16:05:42 -05:00
Danny Milosavljevic ffcd282702
gnu: docker: Booby-trap "Command" and "LookPath" calls.
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Booby-trap "Command" and "LookPath" calls.
2019-01-10 21:29:53 +01:00
Pierre Neidhardt 6a6e5d84da
gnu: opendht: Update to 1.8.1.
* gnu/packages/crypto.scm (opendht): Update to 1.8.1.
[source]: Remove snippet that deletes argon2, which is no longer bundled.
[arguments]: Add "--with-argon2" to use system argon2.
[license]: Update to GPLv3+ following the README and source headers.
2019-01-10 21:09:06 +01:00
Pierre Neidhardt 6fe6840dab
gnu: Add libsecp256k1.
* gnu/packages/crypto.scm (libsecp256k1): New variable.
2019-01-10 21:09:06 +01:00
Pierre Neidhardt 35ac66eec1
gnu: crypto++: Update to 8.0.0.
* gnu/packages/crypto.scm (crypto++): Update to 8.0.0.
[arguments]: Build shared library.
[arguments]: Generate .pc file.
2019-01-10 21:09:06 +01:00
Nam Nguyen dbd346ae88
gnu: sct: Correct license.
* gnu/packages/xdisorg.scm (sct)[license]: Change to non-copyleft.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-10 14:59:23 +01:00
Tim Gesthuizen 7d4b3e1e2b
gnu: Add pwsafe
* gnu/packages/password-utils.scm (pwsafe): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-10 14:59:22 +01:00
Rutger Helling 394207c1ee
gnu: Add missing copyright line.
* gnu/packages/video.scm: Add missing copyright line for commit 20b4aa6.
2019-01-10 08:59:44 +01:00
Rutger Helling 1d591432c7
gnu: wlstream: Fix indentation.
* gnu/packages/video.scm (wlstream): Fix indentation.
2019-01-10 08:53:36 +01:00
Rutger Helling 20b4aa6bab
gnu: Add wlstream.
* gnu/packages/video.scm (wlstream): New variable.
2019-01-10 08:41:03 +01:00
Rutger Helling 1f61cc102e
gnu: ffmpeg: Add libdrm support.
* gnu/packages/video.scm (ffmpeg): Add libdrm support.
2019-01-10 08:20:39 +01:00
Danny Milosavljevic 6b6a25d4d2
gnu: docker: Fix more paths.
* gnu/packages/docker.scm (docker)[inputs]: Add dbus, git.
[arguments]<#:phases>[patch-paths]: Use them.
2019-01-10 05:40:53 +01:00
Mark H Weaver 60893e5c84
gnu: linux-libre: Update to 4.20.1.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.1.
(%linux-libre-hash): Update hash.
2019-01-09 23:00:07 -05:00
Mark H Weaver f7ed0b1db5
gnu: linux-libre@4.19: Update to 4.19.14.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.14.
(%linux-libre-4.19-hash): Update hash.
2019-01-09 23:00:05 -05:00
Mark H Weaver 166c6ad39c
gnu: linux-libre@4.14: Update to 4.14.92.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.92.
(%linux-libre-4.14-hash): Update hash.
2019-01-09 23:00:03 -05:00
Mark H Weaver c37f52e3be
gnu: linux-libre@4.9: Update to 4.9.149.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.149.
2019-01-09 23:00:00 -05:00
Mark H Weaver 28f6b27543
gnu: linux-libre: Enable pressure stall information.
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Enable CONFIG_PSI.
2019-01-09 22:59:58 -05:00
Danny Milosavljevic 8cd958608c
gnu: docker: Disable tests requiring elevated permissions.
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[delete-failing-tests]:
Disable tests requiring elevated permissions.
2019-01-10 04:46:29 +01:00
Danny Milosavljevic 8b487bf84f
gnu: containerd: Fix more paths.
* gnu/packages/docker.scm (containerd)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
2019-01-10 04:34:57 +01:00
Danny Milosavljevic 58adcaa19f
gnu: docker: Fix more paths.
* gnu/packages/docker.scm (docker)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
2019-01-10 04:33:47 +01:00
Danny Milosavljevic 65a7e35cb5
gnu: docker: Substitute LookPath of literals generally.
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Substitute LookPath of literals generally.
2019-01-10 03:12:32 +01:00
Danny Milosavljevic e9b316453e
gnu: Add docker-cli.
* gnu/packages/docker.scm (docker-cli): New variable.
2019-01-10 03:01:12 +01:00
Danny Milosavljevic f87ea24a82
gnu: Add docker.
* gnu/packages/docker.scm (docker): New variable.
* gnu/packages/patches/docker-engine-test-noinstall.patch: New file.
* gnu/packages/patches/docker-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-01-10 02:49:14 +01:00
Leo Famulari fc51c28ae8
gnu: Blender: Update to a beta release of 2.80.
Fixes <https://bugs.gnu.org/33608> and <https://bugs.gnu.org/33882>.

* gnu/packages/graphics.scm (blender): Update to 2.80-beta-0.3c3d80e.
[source]: Fetch from the Git repository.
[inputs]: Use OpenJPEG 2. Add Numpy.
[arguments]: Specify the location of Numpy. Remove some configure flags that are
no longer used. Comment out the 'fix-broken-import' phase because the
file it patches doesn't exist in the Git sources.
[description]: Add a warning about the beta status.
2019-01-09 18:54:16 -05:00
Jelle Licht b96f0e6ff9
gnu: emacs-ghub: Update to 3.2.0.
* gnu/packages/emacs.scm (emacs-ghub): Update to 3.2.0.
[source]: Use 'git-fetch'.
[propagated-inputs]: Add emacs-dash, emacs-graphql,
emacs-let-alist, emacs-treepy.
2019-01-09 22:40:32 +01:00
Jelle Licht 9bc7dd62b4
gnu: emacs-magit-popup: Update to 2.12.5.
* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.5.
2019-01-09 22:40:25 +01:00
Jelle Licht 8d59ef68cb
gnu: emacs-with-editor: Update to 2.8.0.
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.8.0.
[source]: Use 'git-fetch'.
2019-01-09 22:40:13 +01:00
Jelle Licht 5b07f06804
gnu: Add emacs-graphql.
* gnu/packages/emacs.scm (emacs-graphql): New variable.
2019-01-09 22:40:02 +01:00
Jelle Licht abb8dff054
gnu: Add emacs-treepy.
* gnu/packages/emacs.scm (emacs-treepy): New variable.
2019-01-09 22:38:22 +01:00
Jelle Licht 56c50c71b5
gnu: emacs-emacsql: Update to 3.0.0.
* gnu/packages/emacs.scm (emacs-emacsql): Update to 3.0.0.
[source]: Use 'git-fetch'.
[arguments]: Remove unnecessary fix.
2019-01-09 22:38:06 +01:00
Jelle Licht d4e915f9b5
gnu: emacs-closql: Update to 1.0.0.
* gnu/packages/emacs.scm (emacs-closql): Update to 1.0.0.
[source]: Use 'git-fetch'.
2019-01-09 22:37:52 +01:00
Leo Famulari 817e09c174
gnu: Django: Update to 1.11.18 [fixes CVE-2019-3498].
* gnu/packages/django.scm (python-django, python2-django): Update to 1.11.18.
2019-01-09 15:44:36 -05:00
Leo Famulari e82c98abe9
gnu: aria2: Fix CVE-2019-3500.
* gnu/packages/patches/aria2-CVE-2019-3500.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bittorrent.scm (aria2)[source]: Use it.
2019-01-09 15:38:19 -05:00
Leo Famulari 45ee3fde87
gnu: hashcat: Update to 5.1.0.
* gnu/packages/password-utils.scm (hashcat): Update to 5.1.0.
2019-01-09 14:05:20 -05:00
Danny Milosavljevic f73b7bf6e2
gnu: fasm: Update comments.
* gnu/packages/assembly.scm (fasm): Update comments.
2019-01-09 19:33:28 +01:00
Danny Milosavljevic cb95e79f14
gnu: fasm: Fix grammatical errors in description.
* gnu/packages/assembly.scm (fasm)[description]: Modify.
2019-01-09 19:33:27 +01:00
Danny Milosavljevic 1bde3d2cbf
gnu: Add dev86.
* gnu/packages/assembly.scm (dev86): New variable.
2019-01-09 19:33:27 +01:00
Efraim Flashner ab7aa06cac
gnu: python-pygit2: Update to 0.27.3.
* gnu/packages/python.scm (python-pygit2): Update to 0.27.3.
[arguments]: Add custom phase to compile with cffi support. Add custom
phase to not require specific versions of python-cffi.
[native-inputs]: Add python-pytest.
2019-01-09 20:25:50 +02:00
Ludovic Courtès 1b504b498a
gnu: libgit2: Update to 0.27.7.
* gnu/packages/version-control.scm (libgit2): Update to 0.27.7.
2019-01-09 18:47:57 +01:00
Tim Gesthuizen 037c3b0ea2
gnu: emacs-irony-mode: Remove propagated input
emacs-irony-mode finds its server binary because its a propagated input and is
in the path. We can substitute the variable `irony-server-install-prefix` to
not propagate the input and keep the binary isolated from the user.

* gnu/packages/emacs.scm (emacs-irony-mode):
[propagated-inputs] Remove propagated inputs
[inputs] Add emacs-irony-mode-server
[arguments] Add phase substituting the variable of the server path

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-09 18:47:57 +01:00
Tim Gesthuizen ecf7e4ea43
gnu: emacs-ggtags: Don't require GNU Global in path
emacs-ggtags relies on the GNU Global tools (global and gtags) to be available
in the path. This way it will grab some random executable if it will find
executables at all.
This is fixed by setting the prefix to GNU Global in the store. This way
emacs-ggtags will use specific deterministic executables.

* gnu/packages/emacs.scm (emacs-ggtags):
[inputs]: Add GNU Global to the inputs
[arguments]: Add a phase for substituting the right path to the executables

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-09 18:47:57 +01:00
Vasile Dumitrascu b2a5ef2e94
gnu: e2fsprogs: Update to 1.44.5.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-09 18:47:57 +01:00
Vasile Dumitrascu 4287bd19c7
gnu: bind: Update to 9.12.3-P1.
* gnu/packages/dns.scm (bind): Update to 9.12.3-P1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-09 18:47:57 +01:00
Brett Gilio 25a0ffbf27
gnu: emacs-md4rd: Update to c55512c.
* gnu/packages/emacs.scm (emacs-md4rd): Update to c55512c.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-09 18:47:56 +01:00
Ricardo Wurmus cba08f60a1
gnu: Add r-mcmc.
* gnu/packages/cran.scm (r-mcmc): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 39274ab4d9
gnu: Add r-parcor.
* gnu/packages/cran.scm (r-parcor): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 0af9616d91
gnu: Add r-huge.
* gnu/packages/cran.scm (r-huge): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 879a15203b
gnu: Add r-ppls.
* gnu/packages/cran.scm (r-ppls): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 17932a0f63
gnu: Add r-epi.
* gnu/packages/cran.scm (r-epi): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 728012dae8
gnu: Add r-etm.
* gnu/packages/cran.scm (r-etm): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 7aeec0cf37
gnu: Add r-cmprsk.
* gnu/packages/cran.scm (r-cmprsk): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus e3c0e3e360
gnu: Add r-protviz.
* gnu/packages/cran.scm (r-protviz): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus fe4e9f0349
gnu: Add r-rbamtools.
* gnu/packages/cran.scm (r-rbamtools): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus e50722c8e6
gnu: Add r-genenet.
* gnu/packages/cran.scm (r-genenet): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 6a5bfe09eb
gnu: Add r-longitudinal.
* gnu/packages/cran.scm (r-longitudinal): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 1ea708af8c
gnu: Add r-survivalroc.
* gnu/packages/cran.scm (r-survivalroc): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus afc0d8158b
gnu: Add r-bootstrap.
* gnu/packages/cran.scm (r-bootstrap): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 4fcbd7eaf3
gnu: Add r-rmeta.
* gnu/packages/cran.scm (r-rmeta): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus c2d6e866ac
gnu: Add r-drc.
* gnu/packages/cran.scm (r-drc): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 99c164a5c7
gnu: Add r-spatialextremes.
* gnu/packages/cran.scm (r-spatialextremes): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 32725458b7
gnu: Add r-fields.
* gnu/packages/cran.scm (r-fields): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 90104ecd66
gnu: Add r-spam.
* gnu/packages/cran.scm (r-spam): New variable.
2019-01-09 17:13:51 +01:00
Ricardo Wurmus f51dcc275e
gnu: Add r-dotcall64.
* gnu/packages/cran.scm (r-dotcall64): New variable.
2019-01-09 17:13:49 +01:00
Ricardo Wurmus 658b2b62cb
gnu: Add r-assertive.
* gnu/packages/cran.scm (r-assertive): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 39231abf4d
gnu: Add r-assertive-data.
* gnu/packages/cran.scm (r-assertive-data): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 39ef8e097b
gnu: Add r-assertive-data-uk.
* gnu/packages/cran.scm (r-assertive-data-uk): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 6d3702e5ce
gnu: Add r-assertive-data-us.
* gnu/packages/cran.scm (r-assertive-data-us): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 66d0a0a706
gnu: Add r-assertive-strings.
* gnu/packages/cran.scm (r-assertive-strings): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 29d9a2affb
gnu: Add r-assertive-datetimes.
* gnu/packages/cran.scm (r-assertive-datetimes): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 50ce8b1e2c
gnu: Add r-assertive-code.
* gnu/packages/cran.scm (r-assertive-code): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 1f0a761a14
gnu: Add r-assertive-files.
* gnu/packages/cran.scm (r-assertive-files): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 5e3bd35506
gnu: Add r-assertive-types.
* gnu/packages/cran.scm (r-assertive-types): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus dcafcfb4fd
gnu: Add r-assertive-reflection.
* gnu/packages/cran.scm (r-assertive-reflection): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus c358b5d418
gnu: Add r-assertive-models.
* gnu/packages/cran.scm (r-assertive-models): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 905aa46ae5
gnu: Add r-assertive-matrices.
* gnu/packages/cran.scm (r-assertive-matrices): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 2da2d2f605
gnu: Add r-assertive-sets.
* gnu/packages/cran.scm (r-assertive-sets): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus dac9c1f604
gnu: Add r-assertive-numbers.
* gnu/packages/cran.scm (r-assertive-numbers): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 4b2d17edaa
gnu: Add r-assertive-properties.
* gnu/packages/cran.scm (r-assertive-properties): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 8004bb2451
gnu: Add r-assertive-base.
* gnu/packages/cran.scm (r-assertive-base): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus a536c7c9ad
gnu: Add r-rmpfr.
* gnu/packages/cran.scm (r-rmpfr): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 1ab5160434
gnu: Add r-gmp.
* gnu/packages/cran.scm (r-gmp): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus dfd09f7bad
gnu: Add r-bigrquery.
* gnu/packages/cran.scm (r-bigrquery): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus ad6fea1690
gnu: Add r-ontologyindex.
* gnu/packages/cran.scm (r-ontologyindex): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 9170eb7f1f
gnu: Add r-rapidjsonr.
* gnu/packages/cran.scm (r-rapidjsonr): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus e7176ac5bd
gnu: Add r-pixmap.
* gnu/packages/cran.scm (r-pixmap): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 895efece37
gnu: Add r-strucchange.
* gnu/packages/cran.scm (r-strucchange): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus d28be7b76b
gnu: Add r-als.
* gnu/packages/cran.scm (r-als): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 9401f56b81
gnu: Add r-chemometricswithr.
* gnu/packages/cran.scm (r-chemometricswithr): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 25861356ed
gnu: Add r-iso.
* gnu/packages/cran.scm (r-iso): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 00436e2cac
gnu: Add r-nnls.
* gnu/packages/cran.scm (r-nnls): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 2871b670a8
gnu: Add r-kohonen.
* gnu/packages/cran.scm (r-kohonen): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus d0eb09a134
gnu: Add r-grimport.
* gnu/packages/cran.scm (r-grimport): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 7eec973e81
gnu: Add r-tractor-base.
* gnu/packages/cran.scm (r-tractor-base): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus b98662c53a
gnu: Add r-reportr.
* gnu/packages/cran.scm (r-reportr): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus cb03d6c6f3
gnu: Add r-ore.
* gnu/packages/cran.scm (r-ore): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 6e09f50613
gnu: Add r-shades.
* gnu/packages/cran.scm (r-shades): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus f79e63a571
gnu: Add r-rnifti.
* gnu/packages/cran.scm (r-rnifti): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus b2e777b27c
gnu: Add r-tfmpvalue.
* gnu/packages/cran.scm (r-tfmpvalue): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus adcd0cc87e
gnu: Add r-splitstackshape.
* gnu/packages/cran.scm (r-splitstackshape): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 5f0fbfc0ad
gnu: Add r-lassopv.
* gnu/packages/cran.scm (r-lassopv): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 3d62d98e69
gnu: Add r-flare.
* gnu/packages/cran.scm (r-flare): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 029425cbce
gnu: Add r-vbsr.
* gnu/packages/cran.scm (r-vbsr): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 5574cb812a
gnu: Add r-rpostgresql.
* gnu/packages/cran.scm (r-rpostgresql): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 3088b3fc5b
gnu: Add r-rspectra.
* gnu/packages/cran.scm (r-rspectra): New variable.
2019-01-09 15:43:45 +01:00
Ludovic Courtès 0991fd5336
build: Require Guile 2.2.
* configure.ac: Require Guile 2.2.
* README: Adjust accordingly.
* doc/guix.texi (Requirements): Likewise.
* gnu/packages/package-management.scm (guile2.0-guix): Deprecate.
(guix-minimal): Inherit from GUIX, not from GUILE2.0-GUIX.
2019-01-09 14:47:53 +01:00
Eric Bavier fefcb122ac
gnu: dvdisaster: Run regression tests.
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Remove #:tests? argument.
Add 'check' phase.
2019-01-08 09:09:31 -06:00
Eric Bavier 98b0ec7fa6
gnu: dvdisaster: Install desktop file.
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add 'install-desktop phase.
2019-01-08 09:09:25 -06:00
Clément Lassieur 627e6d8c11
gnu: prosody: Update to 0.11.1.
* gnu/packages/messaging.scm (prosody): Update to 0.11.1.
[arguments]: Replace "Makefile" with "GNUmakefile".  Change "5.1" to "5.2".
Explain why there are no tests.
[inputs]: Replace lua-5.1, lua5.1-bitop, lua5.1-expat, lua5.1-socket,
lua5.1-filesystem, lua5.1-sec with lua-5.2, lua5.2-bitop, lua5.2-expat,
lua5.2-socket, lua5.2-filesystem, lua5.2-sec.
2019-01-08 15:23:36 +01:00
Clément Lassieur eb5b6c5777
gnu: Add lua5.2-sec.
* gnu/packages/lua.scm (lua5.2-sec): New variable.
(make-lua-sec): New procedure.
(lua5.1-sec, lua5.2-sec): Call it.
2019-01-08 15:23:36 +01:00