7a8efc81f8
gnu: r-viridis: Update to 0.4.0.
...
* gnu/packages/statistics.scm (r-viridis): Update to 0.4.0.
[propagated-inputs]: Add "r-viridislite".
2017-04-06 14:39:17 +02:00
b5d5344f32
gnu: r-viridislite: Update to 0.2.0.
...
* gnu/packages/statistics.scm (r-viridislite): Update to 0.2.0.
2017-04-06 14:39:17 +02:00
cdadca5e6f
gnu: r-matrixstats: Update to 0.52.1.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.1.
2017-04-06 14:39:17 +02:00
af7a4cc8a8
gnu: r-mvtnorm: Update to 1.0-6.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-6.
2017-04-06 14:39:17 +02:00
82b281fe12
gnu: r-e1071: Update to 1.6-8.
...
* gnu/packages/statistics.scm (r-e1071): Update to 1.6-8.
2017-04-06 14:39:16 +02:00
1d1fbb7336
gnu: r-sparsem: Update to 1.76.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.76.
2017-04-06 14:39:16 +02:00
fb708a1c74
gnu: r-xml: Update to 3.98-1.6.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.6.
2017-04-06 14:39:16 +02:00
1c27bb8f44
gnu: r-rsqlite: Update to 1.1-2.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-2.
2017-04-06 14:39:16 +02:00
0def707ad8
gnu: r-rmarkdown: Update to 1.4.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.4.
2017-04-06 14:39:16 +02:00
ac5e810205
gnu: r-bbmisc: Update to 1.11.
...
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.11.
2017-04-06 14:39:16 +02:00
f1870aef99
gnu: r-backports: Update to 1.0.5.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.0.5.
2017-04-06 14:39:15 +02:00
d05e45f33c
gnu: r-multitaper: Update to 1.0-13.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13.
2017-04-06 14:39:15 +02:00
0fbae8ebca
gnu: r-xml2: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1.
2017-04-06 14:39:15 +02:00
c6e40db528
gnu: r-ade4: Update to 1.7-6.
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6.
2017-04-06 14:39:15 +02:00
10ffdb94e4
gnu: r-data-table: Update to 1.10.4.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4.
2017-04-06 14:39:15 +02:00
9e8fac0c45
gnu: r-chron: Update to 2.3-50.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-50.
2017-04-06 14:39:14 +02:00
b8acb5aa46
gnu: r-cluster: Update to 2.0.6.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-04-06 14:39:14 +02:00
e8988ff9a0
gnu: r-dbi: Update to 0.6-1.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1.
2017-04-06 14:39:14 +02:00
5e0fa201a2
gnu: r-gdtools: Update to 0.1.4.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4.
2017-04-06 14:39:14 +02:00
7267f358a0
gnu: r-stringr: Update to 1.2.0.
...
* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0.
2017-04-06 14:39:14 +02:00
5beda28f6b
gnu: r-stringi: Update to 1.1.3.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3.
2017-04-06 14:39:14 +02:00
69a8ed6a12
gnu: r-rcpp: Update to 0.12.10.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10.
2017-04-06 14:39:13 +02:00
9948b8e24c
gnu: r-digest: Update to 0.6.12.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.12.
2017-04-06 14:39:13 +02:00
344e4741a1
gnu: r-survival: Update to 2.41-3.
...
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
2017-04-06 14:39:13 +02:00
a6dcc78cb0
gnu: r-mgcv: Update to 1.8-17.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
2017-04-06 14:39:13 +02:00
9704bda1b3
gnu: r-matrix: Update to 1.2-8.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
2017-04-06 14:39:12 +02:00
9aea2cdaff
gnu: r-lattice: Update to 0.20-35.
...
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
2017-04-06 14:39:12 +02:00
7ceb26ee83
gnu: r-rprojroot: Update to 1.2.
...
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
2017-04-06 14:39:12 +02:00
d51f05f769
gnu: r-tidyr: Update to 0.6.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
2017-04-06 14:39:10 +02:00
1db293757b
gnu: r-roxygen2: Update to 6.0.1.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
2017-04-06 14:39:10 +02:00
bf6dcf59eb
gnu: Add r-commonmark.
...
* gnu/packages/statistics.scm (r-commonmark): New variable.
2017-04-06 14:39:10 +02:00
1cbb07a8e4
gnu: Add r-desc.
...
* gnu/packages/statistics.scm (r-desc): New variable.
2017-04-06 14:39:10 +02:00
67deeea41b
gnu: r-readr: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
2017-04-06 14:39:09 +02:00
33eb555e6f
gnu: r-tibble: Update to 1.3.0.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
2017-04-06 14:39:09 +02:00
7bf837fd43
gnu: Use HTTPS URLs for GitHub home-pages.
...
* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm,
gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm,
gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm,
gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm,
gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on
GitHub.
2017-04-02 20:00:51 -04:00
84157bb8bf
Merge branch 'master' into core-updates
...
Most conflicts are from 6fd52309b8
2017-03-30 22:59:53 +02:00
6fd52309b8
gnu: Use HTTPS for almost all gnu.org HOME-PAGEs.
...
All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
2017-03-30 01:30:16 +02:00
378de69c59
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-22 12:57:37 +02:00
e2c4fe7c62
gnu: Add r-cairo.
...
* gnu/packages/statistics.scm (r-cairo): New variable.
2017-03-20 21:16:11 +01:00
f67337e23e
Merge branch 'master' into core-updates
2017-03-19 18:52:12 -04:00
60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems.
...
Fixes <https://bugs.gnu.org/25598 >.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
2017-03-17 10:14:02 +01:00
2d7c4ae3ee
gnu: r: Rename to r-minimal.
...
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
f1fe5283c9
gnu: Add r-with-recommended-packages.
...
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
2017-03-17 10:14:02 +01:00
aeb64f3cb2
gnu: r: Do not build recommended packages.
...
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
2017-03-17 10:14:02 +01:00
4b005c7a75
gnu: Add r-spatial.
...
* gnu/packages/statistics.scm (r-spatial): New variable.
2017-03-17 10:14:01 +01:00
567b154fb0
gnu: r-rpart: Move to the set of recommended packages.
...
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
2017-03-17 10:14:01 +01:00
a5a343656b
gnu: r-nnet: Move to set of recommended R packages.
...
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
2017-03-17 10:14:01 +01:00
ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
248f65269a
gnu: Add r-nlme.
...
* gnu/packages/statistics.scm (r-nlme): New variable.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus