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12707 Commits

Author SHA1 Message Date
Ricardo Wurmus 773a50114c
gnu: r-sparsem: Update to 1.74. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 76ce7c3767
gnu: r-data-table: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 58b93ad5d9
gnu: r-estimability: Update to 1.2. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus eebac90aa8
gnu: r-rcpp: Update to 0.12.8. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus 9cdf10f1c9
gnu: r-yaml: Update to 2.1.14. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus c616810720
gnu: r-htmlwidgets: Update to 0.8. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.8.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus f4ca28d911
gnu: r-curl: Update to 2.3. 
* gnu/packages/web.scm (r-curl): Update to 2.3.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus d3122150ca
gnu: r-servr: Update to 0.5. 
* gnu/packages/web.scm (r-servr): Update to 0.5.
 2016-12-29 21:49:08 +01:00
Alex Kost deb6276dda
Remove Emacs interface. 
* emacs/guix-about.el: Remove file.
* emacs/guix-backend.el: Likewise.
* emacs/guix-base.el: Likewise.
* emacs/guix-buffer.el: Likewise.
* emacs/guix-build-log.el: Likewise.
* emacs/guix-command.el: Likewise.
* emacs/guix-config.el.in: Likewise.
* emacs/guix-devel.el: Likewise.
* emacs/guix-entry.el: Likewise.
* emacs/guix-external.el: Likewise.
* emacs/guix-geiser.el: Likewise.
* emacs/guix-guile.el: Likewise.
* emacs/guix-help-vars.el: Likewise.
* emacs/guix-helper.scm.in: Likewise.
* emacs/guix-history.el: Likewise.
* emacs/guix-hydra-build.el: Likewise.
* emacs/guix-hydra-jobset.el: Likewise.
* emacs/guix-hydra.el: Likewise.
* emacs/guix-info.el: Likewise.
* emacs/guix-init.el: Likewise.
* emacs/guix-license.el: Likewise.
* emacs/guix-list.el: Likewise.
* emacs/guix-location.el: Likewise.
* emacs/guix-main.scm: Likewise.
* emacs/guix-messages.el: Likewise.
* emacs/guix-pcomplete.el: Likewise.
* emacs/guix-popup.el: Likewise.
* emacs/guix-prettify.el: Likewise.
* emacs/guix-profiles.el: Likewise.
* emacs/guix-read.el: Likewise.
* emacs/guix-ui-generation.el: Likewise.
* emacs/guix-ui-license.el: Likewise.
* emacs/guix-ui-location.el: Likewise.
* emacs/guix-ui-package.el: Likewise.
* emacs/guix-ui-system-generation.el: Likewise.
* emacs/guix-ui.el: Likewise.
* emacs/guix-utils.el: Likewise.
* emacs/local.mk: Likewise.
* doc/emacs.texi: Likewise.
* doc/guix.texi: Remove cross-references to Emacs nodes.
(Package Management): Mention 'emacs-guix' package.
* doc/contributing.texi (The Perfect Setup): Remove the reference.
* doc/htmlxref.cnf: Add 'emacs-guix' URL.
* Makefile.am: Remove Emacs stuff.
* configure.ac: Likewise.
* gnu/packages/package-management.scm (guix-0.12.0)[native-inputs]:
Remove "emacs".
[propagated-inputs]: Remove "geiser" and "emacs-magit-popup".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-29 23:40:24 +03:00
Ricardo Wurmus 94a6f20baf
gnu: r-colorspace: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
 2016-12-29 20:10:07 +01:00
Raoul Jean Pierre Bonnal 2fd261a37a
gnu: Add r-statmod. 
* gnu/packages/statistics.scm (r-statmod): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 294304169a
gnu: Add r-ggbeeswarm. 
* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 649d0c4841
gnu: Add r-sourcetools. 
* gnu/packages/statistics.scm (r-sourcetools): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 6ba279853c
gnu: Add r-beeswarm. 
* gnu/packages/statistics.scm (r-beeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 069581351b
gnu: Add r-vipor. 
* gnu/packages/statistics.scm (r-vipor): New variable.
 2016-12-29 19:54:58 +01:00
Leo Famulari fc604eda3d
gnu: libpng-1.2: Update to 1.2.57 [security update]. 
* gnu/packages/image.scm (libpng-1.2): Update to 1.2.57.
[replacement]: New field.
 2016-12-29 13:41:43 -05:00
Leo Famulari 322e724bfa
gnu: libpng: Fix a null pointer dereference [fixes security issue]. 
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng/fixed): New variable.
 2016-12-29 13:36:00 -05:00
Leo Famulari d835c6cc4b
gnu: mpd: Update to 0.19.21. 
* gnu/packages/mpd.scm (mpd): Update to 0.19.21.
 2016-12-29 11:30:31 -05:00
ng0 b954256337
gnu: rustc: Update to 1.14.0. 
* gnu/packages/rust.scm (rustc): Update to 1.14.0.
  %rust-bootstrap-binaries: Update to 1.13.0.

Signed-off-by: David Craven <david@craven.ch>
 2016-12-29 12:38:23 +01:00
Ricardo Wurmus e62e975b1f
gnu: mu: Avoid bootstrapping. 
* gnu/packages/mail.scm (mu)[arguments]: Rename "patch-configure.ac" to
"patch-configure" and only patch "configure" script; remove "autoreconf"
phase.
[native-inputs]: Remove "autoconf", "automake", "libtool", and
"texinfo".
 2016-12-29 09:20:08 +01:00
Ricardo Wurmus e7b9da2411
gnu: mu: Update to 0.9.18. 
* gnu/packages/mail.scm (mu): Update to 0.9.18.
 2016-12-29 08:58:57 +01:00
Tobias Geerinckx-Rice 43c0b9beaf
gnu: perl-zip: Update to 1.59. 
* gnu/packages/zip.scm (perl-zip): Update to 1.59.
 2016-12-29 05:37:01 +01:00
ng0 d5bbf806f3
gnu: Add python-trollius-redis. 
* gnu/packages/python.scm (python-trollius-redis, python2-trollius-redis): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 789de5e279
gnu: Add python-straight-plugin. 
* gnu/packages/python.scm (python-straight-plugin, python2-straight-plugins):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 a0e41de4ab
gnu: Add python-openid-teams. 
* gnu/packages/python.scm (python-openid-teams, python2-openid-teams): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 03702173f1
gnu: Add python-openid-cla. 
* gnu/packages/python.scm (python-openid-cla, python2-openid-cla): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 3ef00f5609
gnu: Add python2-openid. 
* gnu/packages/python.scm (python2-openid): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 0151a8df22
gnu: Add python-pygit2. 
* gnu/packages/python.scm (python-pygit2, python2-pygit2): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 460fccd4b3
gnu: Add python-munch. 
* gnu/packages/python.scm (python-munch, python2-munch): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 9f21414de4
gnu: Add python-kitchen. 
* gnu/packages/python.scm (python-kitchen, python2-kitchen): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 a2c7d88e74
gnu: Add python-flask-multistatic. 
* gnu/packages/python.scm (python-flask-multistatic, python2-flask-multistatic):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 a7ad802be5
gnu: Add python-flask-wtf. 
* gnu/packages/python.scm (python-flask-wtf, python2-flask-wtf): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:45 -05:00
Tobias Geerinckx-Rice 50f7da2fc8
gnu: xonsh: Update to 0.5.1. 
* gnu/packages/shells.scm (xonsh): Update to 0.5.1.
 2016-12-29 02:38:21 +01:00
Tobias Geerinckx-Rice 6a34f4ccc8
gnu: python-prompt-toolkit: Update to 1.0.9. 
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.9.
 2016-12-29 02:38:21 +01:00
Tobias Geerinckx-Rice 791ac6a68d
gnu: python-markdown: Update to 2.6.7. 
* gnu/packages/python.scm (python-markdown): Update to 2.6.7.
 2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice 2ee57340f4
gnu: python-numexpr: Update to 2.6.1. 
* gnu/packages/python.scm (python-numexpr): Update to 2.6.1.
 2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice ffb1e98d74
gnu: python-babel: Update to 2.3.4. 
* gnu/packages/python.scm (python-babel): Update to 2.3.4.
 2016-12-29 02:38:20 +01:00
Manolis Ragkousis 1d9c889881
gnu: glibc-hurd: Update to 2.23. 
* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 2.23.
 2016-12-28 21:14:20 +02:00
Marius Bakke 517c3207d3
gnu: rofi: Update to 1.3.0. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.3.0.
 2016-12-28 18:00:02 +01:00
Tobias Geerinckx-Rice 48dc9f3af3
gnu: znc: Update to 1.6.4. 
* gnu/packages/messaging.scm (znc): Update to 1.6.4.
 2016-12-28 05:14:05 +01:00
Nicolas Goaziou 4dbaa12f5d
gnu: wireshark: Update to 2.2.3. 
* gnu/packages/networking.scm (wireshark): Update to 2.2.3.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 17:05:07 +01:00
Nicolas Goaziou d531b9fdfe
gnu: emacs-org: Update to 20161224. 
* gnu/packages/emacs.scm (emacs-org): Update to 20161224.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 17:03:45 +01:00
Stefan Reichoer 9e6c7c425e
gnu: Add httpstat. 
* gnu/packages/networking.scm (httpstat): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 16:56:34 +01:00
Thomas Danckaert ea8450c82a
gnu: Add python-netcdf4. 
* gnu/packages/python.scm (python-netcdf4, python2-netcdf4): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 16:30:59 +01:00
Ricardo Wurmus 2c8d6c0be4
gnu: r-rcas: Update to 1.1.1. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.1.1.
[propagated-inputs]: Add plotrix.
 2016-12-27 14:50:55 +01:00
Leo Famulari 1194575b3c
gnu: python-pycrypto: Add TODO "removal" comment. 
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto): Add
comment.
 2016-12-26 19:51:54 -05:00
Leo Famulari 4de2a710a6
gnu: python-stem: Don't use python-pycrypto. 
Python-pycrypto is an optional dependency of python-stem. Python-pycrypto is
unmaintained [0] and contains an exploitable buffer overflow bug [1].

[0] https://github.com/dlitz/pycrypto/issues/173
[1] https://github.com/dlitz/pycrypto/issues/176

* gnu/packages/python.scm (python-stem, python2-stem)[propagated-inputs]: Remove
python-pycrypto.
 2016-12-26 19:51:49 -05:00
ng0 91426243f1
gnu: awesome: Update to 4.0. 
* gnu/packages/wm.scm (awesome): Update to 4.0.
[source]: Adjust URL.
[inputs]: Add xcb-util-xrm and libxkbcommon.
* gnu/packages/patches/awesome-reproducible-png.patch: Adjust patch.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-26 19:13:27 -05:00
Ben Woodcroft 9916ef8bb6
gnu: diamond: Update to 0.8.30. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.30.
 2016-12-27 09:18:05 +10:00
Leo Famulari c976b319fe
gnu: python-stem: Update to 1.5.3. 
* gnu/packages/python.scm (python-stem, python2-stem): Update to 1.5.3.
[source]: Update URL.
 2016-12-26 13:20:52 -05:00
Ben Woodcroft f1775db660
gnu: ruby-minitest: Update to 5.10.1. 
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.10.1.
 2016-12-26 22:43:59 +10:00
Roel Janssen 328398e752
gnu: Add ripit. 
* gnu/packages/cdrom.scm (ripit): New variable.
 2016-12-26 12:58:29 +01:00
Roel Janssen fb222fb2b0
gnu: Add perl-cddb-get. 
* gnu/packages/perl.scm (perl-cddb-get): New variable.
 2016-12-26 12:45:48 +01:00
Alex Kost b2f1f7b0d9
gnu: emacs-guix: Update to 0.2.1. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.2.1.
 2016-12-26 13:53:53 +03:00
Efraim Flashner 9f74424f37
gnu: xf86-video-qxl: Update to 0.1.5. 
* gnu/packages/xorg.scm (xf86-video-qxl): Update to 0.1.5.
 2016-12-26 04:32:05 +02:00
Ricardo Wurmus 33ca551731
gnu: Add roffit. 
* gnu/packages/groff.scm (roffit): New variable.
 2016-12-25 22:02:39 +01:00
Efraim Flashner f077aa2b29
gnu: libevdev: Update to 1.5.5. 
* gnu/packages/xorg.scm (libevdev): Update to 1.5.5.
[houme-page]: Use https.
 2016-12-25 16:16:10 +02:00
Efraim Flashner db10a5e78a
gnu: libinput: Update to 1.5.3. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.5.3.
 2016-12-25 16:16:00 +02:00
Marius Bakke 4a95b3882d
gnu: exim: Update to 4.87.1 [fixes CVE-2016-9963]. 
* gnu/packages/mail.scm (exim): Update to 4.87.1.
 2016-12-25 13:53:17 +01:00
Taylan Ulrich Bayırlı/Kammer d02fb7cec6
gnu: leptonica: Update to 1.74.0. 
* gnu/packages/image.scm (leptonica): Update to 1.74.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-25 13:48:57 +01:00
Efraim Flashner c88bee0ace
gnu: font-gnu-unifont: Update to 9.0.06. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 9.0.06.
 2016-12-25 05:04:20 +02:00
Leo Famulari 3a2bcac6bd
gnu: libxml2: Fix CVE-2016-5131. 
* gnu/packages/patches/libxml2-CVE-2016-5131.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxml2/fixed)[source]: Add it.
 2016-12-24 19:19:36 -05:00
Leo Famulari 0c83c6bf26
gnu: libxml2: Fix CVE-2016-4658. 
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.
* gnu/packages/patches/libxml2-CVE-2016-4658.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-12-24 19:19:32 -05:00
Efraim Flashner daa481f59a
gnu: qt: Update to 5.7.1. 
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtwebchannel, qtlocation,
qttools, qtscript, qtquickcontrols, qtquickcontrols2, qtgraphicaleffects,
qtwebkit): Update to 5.7.1.
 2016-12-25 01:49:36 +02:00
Efraim Flashner 457d154fdf
gnu: alsa-utils: Update to 1.1.3. 
* gnu/packages/linux.scm (alsa-utils): Update to 1.1.3.
 2016-12-25 01:47:22 +02:00
Efraim Flashner 7604106f2c
gnu: busybox: Update to 1.26.0. 
* gnu/packages/busybox.scm (busybox): Update to 1.26.0.
[arguments]: Enable previously broken grep test.
 2016-12-25 01:47:22 +02:00
Thomas Danckaert db82557013
gnu: netcdf: Enable HDF4 support. 
* gnu/packages/maths.scm (netcdf)[inputs]: Add hdf4-alt and libjpeg.
  [arguments]: Add "--enable-hdf4" configure flag.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-24 14:41:50 +01:00
Marius Bakke f7fb34a06c
gnu: notmuch: Update to 0.23.4. 
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.23.4.
 2016-12-24 14:26:39 +01:00
Tobias Geerinckx-Rice b672e1ed1e
gnu: moreutils: Update to 5.9. 
* gnu/packages/moreutils.scm (moreutils): Update to 5.9.
[source]: Update the fall-back Debian snapshot URL.
[inputs]: Move docbook-xml, docbook-xsl, libxml2, and libxslt from here...
[native-inputs]: ...to this new variable.
[arguments]: Delete the configure phase altogether.  Set the DOCBOOKXSL path
in #:make-flags instead.
[home-page]: Use HTTPS.
 2016-12-24 03:19:03 +01:00
Tobias Geerinckx-Rice 4d2fd1c016
gnu: yadifa: Explicitly enable DNSSEC & caching. 
* gnu/packages/dns.scm (yadifa)[arguments]: Add configure flags to
consistently enable the ‘nsec’, ‘nsec3’, ‘tsig’, and ‘caching’ features.
 2016-12-23 23:54:15 +01:00
Tobias Geerinckx-Rice 8769d482ef
gnu: yadifa: Update to 2.2.3. 
* gnu/packages/dns.scm (yadifa): Update to 2.2.3.
[version, source]: Remove monotonic revision number from the version
string.  Use it only to reconstruct the download URL.
 2016-12-23 23:54:15 +01:00
Kei Kebreau eed2a95e9f
gnu: minetest: Update to 0.4.15. 
* gnu/packages/games.scm (minetest-data, minetest): Update to 0.4.15.
 2016-12-23 17:34:41 -05:00
Tobias Geerinckx-Rice 41d23dd1e2
gnu: btrfs-progs: Update to 4.9. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.9.
 2016-12-23 20:29:18 +01:00
ng0 50e9f81a22
gnu: gnurl: Split man pages to doc output. 
* gnu/packages/gnunet.scm (gnurl)[arguments]: Add 'move-man3-pages' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:58:03 -05:00
ng0 4ec08b637b
gnu: gnurl: Make tests more verbose. 
* gnu/packages/gnunet.scm (gnurl)[arguments]: Replace the 'check' phase.
Move the 'disable-test1026' and 'patch-runtests' phases into 'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:58:03 -05:00
ng0 a0e43c9fa7
gnu: gnurl: Update to 7.52.1 [fixes CVE-2016-{9586, 9952, 9953, 9594}]. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.52.1.
[arguments]: Add 'autoconf' and 'disable-test1026' phases.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:58:02 -05:00
Chris Marusich 426e6083ae
gnu: Add asunder. 
* gnu/packages/cdrom.scm (asunder): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:34:42 -05:00
Marius Bakke d0f1673dc3
gnu: dnscrypt-proxy: Update to 1.8.1. 
* gnu/packages/dns.scm (dnscrypt-proxy): Update to 1.8.1.
 2016-12-23 15:53:51 +01:00
Marius Bakke 14251e30c4
gnu: curl: Update replacement to 7.52.1 [fixes CVE-2016-{9586,9594}]. 
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.52.1.
[home-page]: Use HTTPS.
(curl-7.51.0): Replace with ...
(curl-7.52.1): ... this.
 2016-12-23 15:31:36 +01:00
Bake Timmons b881dc6d98
gnu: Add wwwoffle. 
* gnu/packages/web.scm (wwwoffle): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-23 15:18:02 +01:00
Thomas Danckaert d205f895ca
gnu: Add python-hdf4. 
* gnu/packages/python.scm (python-hdf4, python2-hdf4): New variables.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-23 14:51:56 +01:00
Leo Famulari 4b4ff6938d
gnu: qsyncthingtray: Update to 0.5.7. 
* gnu/packages/sync.scm (qsyncthingtray): Update to 0.5.7.
 2016-12-23 02:01:28 -05:00
Kei Kebreau e813f3956e
gnu: xonsh: Fix description. 
* gnu/packages/shells.scm (xonsh)[description]: Two spaces after a period.
 2016-12-22 18:06:56 -05:00
Efraim Flashner a532a6711e
gnu: qtimageformats: Add jasper support. 
* gnu/packages/qt.scm (qtimageformats)[inputs]: Add jasper.
 2016-12-23 01:01:27 +02:00
Stefan Reichör 572ee05c31
gnu: xonsh: Update to 0.5.0. 
* gnu/packages/shells.scm (xonsh): Update to 0.5.0.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-12-22 17:59:41 -05:00
Marius Bakke 059b3aa9c3
gnu: gnupg: Fix build on 32-bit architectures. 
* gnu/packages/patches/gnupg-test-segfault-on-32bit-arch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
 2016-12-22 15:05:50 +01:00
Ricardo Wurmus 8e401ab6db
gnu: python-scikit-learn: Update to 0.18.1. 
* gnu/packages/python.scm (python-scikit-learn): Update to 0.18.1.
[arguments]: Remove special "check" phase.
[native-inputs]: Add python-cython.
 2016-12-22 13:19:20 +01:00
Leo Famulari 8bf4a6aecd
gnu: shotwell: Update to 0.25.2. 
* gnu/packages/gnome.scm (shotwell): Update to 0.25.2.
 2016-12-22 02:54:42 -05:00
Efraim Flashner 5d0ebcc4cf
gnu: gcc: Update to 6.3.0. 
* gnu/packages/gcc.scm (gcc): Update to 6.3.0.
 2016-12-22 02:53:24 +02:00
Efraim Flashner 0d1baed223
gnu: abcde: Add flac support. 
* gnu/packages/cdrom.scm (abcde)[inputs]: Add flac.
[arguments]: Wrap the bunary with flac's bin dir also.
 2016-12-22 02:53:19 +02:00
Ricardo Wurmus 590b80d29a
Merge branch 'version-0.12.0' 2016-12-21 23:33:18 +01:00
Efraim Flashner d229ba9502
gnu: qemu: Update to 2.8.0. 
* gnu/packages/qemu.scm (qemu): Update to 2.8.0.
[source]: Remove patches.
[arguments]: Set host_cc during 'configure.
* gnu/packages/patches/qemu-CVE-2016-8576.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-12-21 21:28:15 +02:00
Julien Lepiller 4da696877c
gnu: coq: Build coqide 
* gnu/packages/ocaml.scm (coq): Build coqide.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-21 17:54:18 +01:00
Julien Lepiller 8afd19585f
gnu: lablgtk: use ocamlfind in installation 
* gnu/packages/ocaml.scm (lablgtk): Use ocamlfind in installation.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-21 17:54:18 +01:00
Julien Lepiller 054fea97b7
gnu: lablgtk: Update to 2.18.5 
* gnu/packages/ocaml.scm (lablgtk): Update to 2.18.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-21 17:54:18 +01:00
Leo Famulari c8c385a04a
Revert "gnu: curl: Update replacement to 7.52.0 [fixes CVE-2016-{9586,9952,9953}]." 
The curl maintainers said this about 7.52.0:

"Attention! We will release a patch update within a few days to fix a
serious security problem found in curl 7.52.0. You may consider holding
off until then."

This message was displayed at <https://curl.haxx.se/download.html> on
2016-12-21.

This reverts commit 42366b35c3.
 2016-12-21 11:52:36 -05:00
Tobias Geerinckx-Rice f05f5b307e
gnu: mlt: Update to 6.4.1. 
* gnu/packages/video.scm (mlt): Update to 6.4.1.
 2016-12-21 16:37:01 +01:00
Tobias Geerinckx-Rice 9fa7284155
gnu: jsoncpp: Update to 1.8.0. 
* gnu/packages/serialization.scm (jsoncpp): Update to 1.8.0.
 2016-12-21 16:37:01 +01:00
Tobias Geerinckx-Rice e177f819c0
gnu: xf86-video-vmware: Update to 13.2.1. 
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.2.1.
[native-inputs]: Add eudev.
 2016-12-21 16:37:00 +01:00
Tobias Geerinckx-Rice 7aef9930f0
gnu: xcb-util-xrm: Update to 1.2. 
* gnu/packages/xdisorg.scm (xcb-util-xrm): Update to 1.2.
 2016-12-21 16:37:00 +01:00
Tobias Geerinckx-Rice 82f44a36e4
gnu: xcape: Update to 1.2. 
* gnu/packages/xdisorg.scm (xcape): Update to 1.2.
 2016-12-21 16:37:00 +01:00
Marius Bakke 42366b35c3
gnu: curl: Update replacement to 7.52.0 [fixes CVE-2016-{9586,9952,9953}]. 
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.52.0.
(curl-7.51.0): Replace with ...
(curl-7.52.0): ... this.
 2016-12-21 14:56:34 +01:00
Ludovic Courtès 7af6ecab6e
gnu: guix: Really skip "pivot-root" test. 
This is a followup to fe9bdb581e (which
introduced 'test-equal' for the "pivot-root" test) and to
198eac2bca (which updated the regexps for
skipped tests.)

* gnu/packages/package-management.scm (guix-0.12.0)[arguments]: In
'disable-container-tests' phase, add "test-equal" to the regexp, so that
"pivot-root" is really skipped.
 2016-12-21 14:28:28 +01:00
Ricardo Wurmus 7aa8785c41
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to b291b327.
 2016-12-21 10:32:17 +01:00
Ludovic Courtès b291b3271a
gnu: linux-libre: Avoid invalid "kconfig" input on armhf and mips64el. 
This fixes a bug whereby:

  guix build linux-libre -s armhf-linux

would fail with:

  guix build: error: gnu/packages/linux.scm:231:2: package `linux-libre-4.8.15' has an invalid input: ("kconfig" #f)

This led 'tests/guix-system.sh' to fail.

* gnu/packages/linux.scm (make-linux-libre)[native-inputs]: Never add #f
as a "kconfig" input.
 2016-12-21 10:22:32 +01:00
Leo Famulari 6a148b9db5
gnu: imagemagick: Update to 6.9.7-0. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-0.
 2016-12-20 20:50:50 -05:00
Marius Bakke 21eced80a0
gnu: nmap: Update to 7.40. 
* gnu/packages/admin.scm (nmap): Update to 7.40.
 2016-12-21 00:14:08 +01:00
Ludovic Courtès 64b5e41376
gnu: linux-libre: Avoid invalid "kconfig" input on armhf and mips64el. 
This fixes a bug whereby:

  guix build linux-libre -s armhf-linux

would fail with:

  guix build: error: gnu/packages/linux.scm:231:2: package `linux-libre-4.8.15' has an invalid input: ("kconfig" #f)

This led 'tests/guix-system.sh' to fail.

* gnu/packages/linux.scm (make-linux-libre)[native-inputs]: Never add #f
as a "kconfig" input.
 2016-12-20 23:39:30 +01:00
Efraim Flashner 899358d18a
gnu: msmtp: Update to 1.6.6. 
* gnu/packages/mail.scm (msmtp): Update to 1.6.6.
 2016-12-20 22:43:07 +02:00
Efraim Flashner 837ca0f071
gnu: getmail: Update to 4.52.0. 
* gnu/packages/mail.scm (getmail): Update to 4.52.0.
 2016-12-20 22:43:06 +02:00
Efraim Flashner c55fa42b2d
gnu: bogofilter: Use 'modify-phases'. 
* gnu/packages/mail.scm (bogofilter)[arguments]: Use 'modify-phases'.
 2016-12-20 22:43:06 +02:00
Efraim Flashner 329e0a9ca0
gnu: mutt: Update to 1.7.2. 
* gnu/packages/mail.scm (mutt): Update to 1.7.2.
 2016-12-20 22:43:06 +02:00
Efraim Flashner de75f0b1bf
gnu: mailutils: Use 'modify-phases' syntax. 
* gnu/packages/mail.scm (mailutils)[arguments]: Use 'modify-phases'.
 2016-12-20 22:43:06 +02:00
Efraim Flashner abe5d2dc8d
gnu: mailutils: Update to 3.1.1. 
* gnu/packages/mail.scm (mailutils): Update to 3.1.1.
[inputs]: Build with current readline.
[arguments]: Set sysconfdir as /etc.
[home-page]: Use https.
 2016-12-20 22:43:05 +02:00
Efraim Flashner e31d35de3f
gnu: gnupg: Remove unneeded input. 
* gnu/packages/gnupg.scm (gnupg)[inputs]: Remove adns.
 2016-12-20 22:43:01 +02:00
Leo Famulari 8cb3e7e7de
gnu: borg: Update to 1.0.9. 
* gnu/packages/backup.scm (borg): Update to 1.0.9.
[arguments]: Run the check phase in its own directory. Skip the test
'test_get_security_dir'.
 2016-12-20 14:50:19 -05:00
Leo Famulari 4f6ff977c2
gnu: nss: Add comment about test failures in NSS 3.27.2 
* gnu/packages/gnuzilla.scm (nss): Add comment.
 2016-12-20 14:44:53 -05:00
Leo Famulari 6eda11de44
Revert "gnu: nss, nss-certs: Update to 3.27.2." 
This reverts commit 7ab3ea4266.
 2016-12-20 14:35:21 -05:00
Ricardo Wurmus 62a3179395
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to c8e2219c.
(guix): Set to GUIX-DEVEL.
 2016-12-20 18:06:00 +01:00
Ricardo Wurmus c8e2219cfb
gnu: guix: Update to 0.12.0. 
* gnu/packages/package-management.scm (guix-0.11.0): Rename to...
(guix-0.12.0): ... this.  Adjust users.
(guix): Set to GUIX-0.12.0.
 2016-12-20 17:58:06 +01:00
ng0 7d2511bc6b
gnu: Add alsa-plugins. 
* gnu/packages/linux.scm (alsa-plugins): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-12-20 10:22:06 -05:00
Marius Bakke 06fcd4a89e
gnu: gnupg: Update to 2.1.17. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.17.
 2016-12-20 15:48:24 +01:00
Ludovic Courtès 4a78638f1f
gnu: cuirass: Make sure 'cuirass' has 'evaluate' in $PATH. 
* gnu/packages/ci.scm (cuirass)[arguments]: Add OUT/bin to 'PATH'.
 2016-12-20 10:27:08 +01:00
John Darrington 8c4e99cca3
gnu: Fix load-extension path in packaging of guile-ncurses. 
* gnu/packages/guile.scm (guile-ncurses) [arguments]: Install shared object before
attempting to build the package.  Patch load-extension path before building instead
of after.
 2016-12-20 06:43:29 +01:00
Tobias Geerinckx-Rice 1feeb2e035
gnu: argon2: Update to 20161029. 
* gnu/packages/password-utils.scm (argon2): Update to 20161029.
 2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice 934ba12f3d
gnu: cppcheck: Update to 1.76.1. 
* gnu/packages/check.scm (cppcheck): Update to 1.76.1.
 2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice 17c2294c24
gnu: hunspell: Add missing perl dependency. 
* gnu/packages/libreoffice.scm (hunspell)[inputs]: Add perl dependency
for ispellaff2myspell.
 2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice 4dec10baa8
gnu: hunspell: Update to 1.5.4. 
* gnu/packages/libreoffice.scm (hunspell): Update to 1.5.4.
[source]: Add a file-name.
 2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice d36935cdd1
gnu: Add Ancient Greek Aspell dictionary. 
* gnu/packages/aspell.scm (aspell-dict-grc): New variable.
 2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice 707ee32471
gnu: aspell-dictionary: Use ‘modify-phases’ syntax. 
* gnu/packages/aspell.scm (aspell-dictionary)[arguments]: Use
‘modify-phases’.
 2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice f87b8e25c3
gnu: weechat: Use new xz-compressed tarball. 
* gnu/packages/irc.scm (weechat)[source]: Use ‘.tar.xz’ source.
 2016-12-20 05:36:56 +01:00
Tobias Geerinckx-Rice 33d5b2464d
gnu: cutadapt: Use ‘modify-phases’ syntax. 
* gnu/packages/bioinformatics.scm (cutadapt)[arguments]: Use
‘modify-phases’.
 2016-12-20 05:36:55 +01:00
Efraim Flashner 2fb5af2c2b
gnu: enlightenment: Update to 0.21.5. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.5.
 2016-12-20 04:22:29 +02:00
Efraim Flashner 0870372159
gnu: tor: Update to 0.2.9.8. 
* gnu/packages/tor.scm (tor): Update to 0.2.9.8.
 2016-12-20 03:55:38 +02:00
Ludovic Courtès 2eadd8285a
gnu: cuirass: Add Git to 'PATH'. 
* gnu/packages/ci.scm (cuirass)[arguments]: In 'wrap-program' phase, add
Git to 'PATH'.
[inputs]: Add GIT.
 2016-12-19 23:57:18 +01:00
ng0 c27b31e8d2
gnu: utox: Fix description. 
* gnu/packages/messaging.scm (utox): Fix description.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-19 23:57:18 +01:00
ng0 c413c6ade8
gnu: utox: Update to 0.11.0. 
* gnu/packages/messaging.scm (utox): Update to 0.11.0.
[source]: Update source uri to new group namespace on github.
[build-system]: Change to cmake-build-system.
[arguments]: Remove previous content and disable tests,
add two new phases.
[inputs]: Remove libtoxcore, add c-toxcore.
[native-inputs]: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-19 23:57:18 +01:00
ng0 0ed5554a01
gnu: Add c-toxcore. 
* gnu/packages/messaging.scm (c-toxcore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-19 23:57:18 +01:00
Marius Bakke acb5f7c3fc
gnu: Add grub-efi. 
* gnu/packages/grub.scm (grub-efi): New variable.
 2016-12-19 23:43:47 +01:00
Marius Bakke 7d0910d4a7
Revert "gnu: grub: Add dependency on efibootmgr." 
This reverts commit 3eee16130d.

Reverted in favor of separate grub-efi package. See discussion at
https://lists.gnu.org/archive/html/guix-devel/2016-12/msg00765.html .
 2016-12-19 23:43:47 +01:00
Marius Bakke 7d8f7ab9be
gnu: grub: Use qemu-minimal for tests. 
* gnu/packages/grub.scm (qemu-for-tests): Remove variable.
(grub)[native-inputs]: Replace QEMU-FOR-TESTS with QEMU-MINIMAL.
 2016-12-19 23:43:09 +01:00
Tobias Geerinckx-Rice 8d1ef002ee
gnu: linux-libre: Fix typo. 
* gnu/packages/linux.scm (%linux-libre-hash): Remove excess quote.
 2016-12-19 20:42:19 +01:00
Tobias Geerinckx-Rice 1f94bff2d4
gnu: cutadapt: Update to 1.12. 
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.12.
[inputs]: Add python-xopen.
 2016-12-19 20:33:32 +01:00
Tobias Geerinckx-Rice 361a2fcf8d
gnu: Add python-xopen. 
* gnu/packages/python.scm (python-xopen, python2-xopen): New variables.
 2016-12-19 20:33:31 +01:00
Mark H Weaver 565775399e
gnu: linux-libre: Update to 4.8.15. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.15.
 2016-12-19 14:07:27 -05:00
Mark H Weaver 9cedffe5db
Revert "gnu: linux-libre: Update to 4.9." 
This reverts commit 5a3849443a.

Module loading is broken on i686 with some configurations, including our
default configuration.  See <https://bugs.gnu.org/25231>.
 2016-12-19 14:03:41 -05:00
Marius Bakke a25b6880f1
gnu: python-efl: Disable tests. 
* gnu/packages/enlightenment.scm (python-efl, python2-efl)[arguments]: Add
phase to set test environment. And set #:tests? #f.
 2016-12-19 18:13:24 +01:00
Thomas Danckaert 834d12226b
gnu: kdbusaddons: Embed kinit store dir, avoid dependency cycles. 
kdbusaddons needs to know the location of the kdeinit5 executable,
provided by kinit. kinit depends on kdbusaddons, so we add bootstrap
versions of all packages in the dependency chain from kinit to
kdbusaddons to avoid cyclic dependencies.

* gnu/packages/kde-frameworks.scm (kinit-bootstrap,
  kdbusaddons-bootstrap): New variables.
  (kdbusaddons)[inputs]: Add kinit-bootstrap.
  [source,arguments]: Add patch and substitution to embed
  kinit-bootstrap's store directory in the code.
* gnu/packages/patches/kdbusaddons-kinit-file-name.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-19 17:51:00 +01:00
Leo Famulari 43686dcb2f
gnu: openssh: Update to 7.4p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.4p1.
[source]: Remove 'openssh-memory-exhaustion.patch'.
* gnu/packages/patches/openssh-memory-exhaustion.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-12-19 10:54:11 -05:00
Leo Famulari 307349f6f7
gnu: samba: Update to 4.5.3 [fixes CVE-2016-{2123,2125,2126}]. 
* gnu/packages/samba.scm (samba): Update to 4.5.3.
 2016-12-19 09:50:02 -05:00
Marius Bakke 94a84d8367
gnu: pcsc-lite: Update to 1.8.19. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.19.
 2016-12-19 14:27:33 +01:00
Manolis Ragkousis be6a70edc2
gnu: hurd-headers: Update to 0.9. 
* gnu/packages/hurd.scm (hurd-headers): Update to version 0.9.
 2016-12-19 12:04:48 +02:00
Manolis Ragkousis 9c9402be2e
gnu: mig: Update to 1.8. 
* gnu/packages/hurd.scm (mig): Update to version 1.8.
 2016-12-19 12:04:43 +02:00
Manolis Ragkousis d950f03848
gnu: gnumach-headers: Update to 1.8. 
* gnu/packages/hurd.scm (gnumach-headers): Update to version 1.8.
 2016-12-19 12:04:21 +02:00
Kei Kebreau 5f80054053
gnu: gnuplot: Update to 5.0.5. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.5.
 2016-12-18 23:27:43 -05:00
Marius Bakke c0b12a606b
gnu: sshoot: Fix tests. 
* gnu/packages/vpn.scm (sshoot)[arguments]: Add 'patch-paths' phase.
 2016-12-19 04:13:59 +01:00
Marius Bakke 1c1b67a3c9
gnu: thefuck: Correct inputs and disable tests. 
* gnu/packages/admin.scm (thefuck)[arguments]: Set #:tests? #f.
[inputs]: Move everything to ...
[propagated-inputs]: ... here. Remove duplicate [inputs] and python-setuptools.
[native-inputs]: Add python-pytest, python-pytest-mock and python-mock.
 2016-12-19 01:28:27 +01:00
Kei Kebreau 5a2604bfb6
gnu: wxmaxima: Update to 16.12.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 16.12.0.
 2016-12-18 14:05:40 -05:00
Kei Kebreau 55b2756906
gnu: tor: split description into two parts for easier reading. 
* gnu/packages/tor.scm (tor)[description]: Split it.
 2016-12-18 13:00:11 -05:00
Kei Kebreau 4a652c78d4
gnu: maxima: Update to 5.39.0. 
* gnu/packages/maths.scm (maxima): Update to 5.39.0.
 2016-12-18 12:57:09 -05:00
Marius Bakke 0599416520
gnu: mumble: Update to 1.2.18. 
* gnu/packages/telephony.scm (mumble): Update to 1.2.18.
 2016-12-18 16:53:21 +01:00
Hartmut Goebel 00e0ca7ccb
gnu: python-docutils: Update to 0.13.1 
* gnu/packages/python.scm(python-docutils): Update to 0.13.1.
[source]: Use pypi-uri.
 2016-12-18 16:31:35 +01:00
Ludovic Courtès 8a4c988892
build: check-final-inputs-self-contained has an exception for 'bash:include'. 
Currently 'bash:include' of the final Bash depends on bootstrap stuff.

* build-aux/check-final-inputs-self-contained.scm (final-inputs): Add
clause for 'bash:include'.
* gnu/packages/commencement.scm (bash-final): Add FIXME comment.
 2016-12-18 12:37:26 +01:00
Ricardo Wurmus 5073ecf055
gnu: yoshimi: Update to 1.5.0. 
* gnu/packages/music.scm (yoshimi): Update to 1.5.0.
 2016-12-18 12:00:33 +01:00
Nicolas Goaziou 36a318adc7
gnu: emacs-org: Update to 20161214. 
* gnu/packages/emacs.scm (emacs-org): Update to 20161214.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2016-12-18 17:05:45 +08:00
Leo Famulari 51d8395ac6
gnu: youtube-dl: Update to 2016.12.15. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.12.15.
 2016-12-17 20:27:21 -05:00
Raoul Bonnal a1814e4a27
gnu: r: Update to 3.3.2. 
* gnu/packages/statistics.scm (r): Update to 3.3.2.
 2016-12-18 10:02:52 +10:00
Ben Woodcroft 3fffabce2a
gnu: Add attribution line for Raoul Bonnal. 
This is a follow-up commit to c9e9154e99.

* gnu/packages/bioinformatics.scm: Add attribution.
 2016-12-18 10:01:04 +10:00
Marius Bakke 7b6ff42aa3
gnu: git-annex-remote-hubic: Fix python-dateutil dependency. 
This is a followup to 22d7360b16.

* gnu/packages/version-control.scm (git-annex-remote-hubic)[propagated-inputs]:
Change python-dateutil-2 to python-dateutil.
 2016-12-18 00:44:09 +01:00
Ludovic Courtès a32d0c8304
gnu: sane-backends: Remove timestamps from the output. 
* gnu/packages/scanner.scm (sane-backends-minimal)[source](modules, snippet):
New fields.
 2016-12-17 23:13:05 +01:00
Andy Patterson 4c92874328
gnu: Add and use sane-backends. 
* gnu/packages/scanner.scm (sane-backends): New variable.
* gnu/packages/gnome.scm (colord, simple-scan): Use it instead of
'sane-backends-minimal'.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
* gnu/packages/wine.scm (wine): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-17 23:13:05 +01:00
Andy Patterson 32aa37a2e7
gnu: Add and use sane-backends-minimal. 
* gnu/packages/scanner.scm (sane-backends): Rename to...
(sane-backends-minimal): this. Adjust name, source, synopsis and
description accordingly.
* gnu/packages/cups.scm (hplip): Use 'sane-backends-minimal' instead of
'sane-backends'.
* gnu/packages/gnome.scm (colord, simple-scan): Likewise.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
* gnu/packages/wine.scm (wine): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-17 23:13:04 +01:00
Andy Patterson 33a14e29f9
gnu: sane-backends: Disable backend generation. 
* gnu/packages/scanner.scm (sane-backends)[arguments]: Add a phase to
disable the compilation of backends.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-17 23:13:04 +01:00
Leo Famulari 9b1d77f6d4
gnu: pinentry: Update to 1.0.0. 
* gnu/packages/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-gnome3,
pinentry-qt): Update to 1.0.0.
 2016-12-17 13:40:42 -05:00
Leo Famulari 402efb61d3
gnu: npth: Update to 1.3. 
* gnu/packages/gnupg.scm (npth): Update to 1.3.
 2016-12-17 13:40:42 -05:00
Ludovic Courtès d44fb7dd60
gnu: bootstrap: Add FTP URL for bootstrap binaries. 
* gnu/packages/bootstrap.scm (%bootstrap-base-urls): Add
ftp://alpha.gnu.org (http://alpha.gnu.org is currently unresponsive.)
 2016-12-17 14:46:42 +01:00
Raoul Bonnal c9e9154e99
gnu: star: Update to 2.5.2b. 
* gnu/packages/bioinformatics (star): Update to 2.5.2b.
[source]: Delete precompiled binary.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2016-12-17 23:26:35 +10:00
Marius Bakke 39d0de3375
gnu: asciinema: Fix test requirements. 
* gnu/packages/terminals.scm (asciinema)[native-inputs]: Add python-requests.
 2016-12-17 12:19:41 +01:00
Marius Bakke 51ad11ad62
gnu: Add fatfsck-static. 
* gnu/packages/disk.scm (dosfstools/static): New private variable.
(fatfsck/static): New variable.
 2016-12-17 10:13:22 +01:00
Alex Kost 64e43c674e
gnu: Add emacs-guix. 
* gnu/packages/emacs.scm (emacs-guix): New variable.
 2016-12-17 10:56:39 +03:00
Alex Kost 753baf775f
gnu: Add emacs-bui. 
* gnu/packages/emacs.scm (emacs-bui): New variable.
 2016-12-17 10:56:39 +03:00
Leo Famulari c7ec7c9926
gnu: imagemagick: Update to 6.9.6-8. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-8.
 2016-12-17 00:46:48 -05:00
Leo Famulari 7c1a7bf484
gnu: acme-client: Provide path to certificates. 
* gnu/packages/tls.scm (acme-client)[arguments]: Add 'patch-paths' phase.
 2016-12-17 00:09:10 -05:00
Leo Famulari f8faf537ca
gnu: libupnp: Fix CVE-2016-8863. 
* gnu/packages/patches/libupnp-CVE-2016-8863.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/libupnp.scm (libupnp)[source]: Use it.
 2016-12-16 15:28:02 -05:00
Marius Bakke cdc2bb50b2
gnu: pbtranscript-tofu: Disable tests. 
* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[arguments]: Set #:tests? #f.
 2016-12-16 18:15:47 +01:00
Theodoros Foradis 850812decf
gnu: Add Greek Aspell dictionary 
* gnu/packages/aspell.scm (aspell-dict-el): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-16 18:04:55 +01:00
ng0 fc9286d03a
gnu: tor: Recommend torsocks. 
* gnu/packages/tor.scm (tor)[description]: Recommend torsocks.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-12-16 10:49:01 -05:00
Marius Bakke ee94ca11a1
gnu: python-beautifulsoup4: Fix python2 variant. 
This is a followup to 5f37f0b66e.

* gnu/packages/python.scm (python-beautifulsoup4)[properties]: New
  field. Delay python2 variant.
 2016-12-16 16:15:41 +01:00
Marius Bakke 752eb9e0d8
gnu: python2-kombu: Disable tests. 
* gnu/packages/python.scm (python2-kombu)[arguments]: Set #:tests? #f.
 2016-12-16 15:33:13 +01:00
Ludovic Courtès 3eee16130d
gnu: grub: Add dependency on efibootmgr. 
Suggested by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/grub.scm (grub)[arguments]: In 'patch-stuff', set
efibootmgr absolute file name in 'platform.c'.
[inputs]: Add EFIBOOTMGR.
 2016-12-16 14:45:56 +01:00
Marius Bakke 7c6bf660d8
gnu: python-pyopenssl: Enable tests. 
* gnu/packages/patches/python-pyopenssl-skip-network-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl)[source]: Use it.
[arguments]: Replace 'check' with custom phase.
 2016-12-16 14:36:15 +01:00
Marius Bakke 329553482d
gnu: ptpython: Disable tests. 
* gnu/packages/python.scm (ptpython, ptpython2)[arguments]: Set #:tests? #f.
 2016-12-16 13:39:07 +01:00
Marius Bakke 0d90875974
gnu: multiqc: Fix test dependencies. 
* gnu/packages/bioinformatics.scm (multiqc)[native-inputs]: Add python-nose.
 2016-12-16 13:28:49 +01:00
Marius Bakke 52f622ef9f
gnu: python-sympy: Update to 1.0. 
* gnu/packages/python.scm (python-sympy, python2-sympy): Update to 1.0.
[propagated-inputs]: Add python-mpmath.
 2016-12-16 13:22:12 +01:00
Marius Bakke 58a35665d9
gnu: Add python-mpmath. 
* gnu/packages/python.scm (python-mpmath, python2-mpmath): New variables.
 2016-12-16 13:22:10 +01:00
Marius Bakke 14386fc7d9
gnu: idr: Remove explicit wrapper. This is now done implicitly. 
* gnu/packages/bioinformatics.scm (idr)[arguments]: Remove #:phases.
 2016-12-16 13:16:39 +01:00
Marius Bakke b7a820fc97
gnu: idr: Correct inputs. 
* gnu/packages/bioinformatics.scm (idr)[inputs]: Move everything from here ...
[propagated-inputs]: ... to here. Add python-sympy.
 2016-12-16 13:11:20 +01:00
Marius Bakke 1c10a1d75c
gnu: idr: Disable tests. 
* gnu/packages/bioinformatics.scm (idr)[arguments]: Set #:tests? #f.
 2016-12-16 13:08:57 +01:00
Tobias Geerinckx-Rice c8502d9ec1
Revert "gnu: kmod: Update to 23." 
This should have been pushed to the ‘staging’ branch first.

This reverts commit 1e1cd41629.
 2016-12-16 12:19:50 +01:00
Marius Bakke aaffb9c97b
gnu: deeptools: Fix test dependency. 
* gnu/packages/bioinformatics.scm (deeptools)[native-inputs]: Add python-nose.
 2016-12-16 04:27:35 +01:00
Marius Bakke d281be18bc
gnu: clipper: Fix test dependency. 
* gnu/packages/bioinformatics.scm (clipper)[native-inputs]: Add python2-nose.
 2016-12-16 04:26:32 +01:00
Tobias Geerinckx-Rice 7c58c852c4
gnu: libraw1394: Update to 2.1.2. 
* gnu/packages/linux.scm (libraw1394): Update to 2.1.2.
 2016-12-16 03:08:43 +01:00
Tobias Geerinckx-Rice 1e1cd41629
gnu: kmod: Update to 23. 
* gnu/packages/linux.scm (kmod): Update to 23.
 2016-12-16 03:08:42 +01:00
Tobias Geerinckx-Rice 3fe7cb872a
gnu: ethtool: Update to 4.8. 
* gnu/packages/networking.scm (ethtool): Update to 4.8.
 2016-12-16 03:08:42 +01:00
Tobias Geerinckx-Rice 7d162df8ce
gnu: mcelog: Update to 146. 
* gnu/packages/linux.scm (mcelog): Update to 146.
 2016-12-16 03:08:41 +01:00
Marius Bakke 154d207c43
gnu: python-apsw: Fix tests. 
* gnu/packages/python.scm (python-apsw, python2-apsw)[arguments]: Use
  'modify-phases'. Add installed PYTHONPATH before running tests.
 2016-12-16 02:45:49 +01:00
Mark H Weaver 0eb36dd17f
gnu: linux-libre@4.4: Update to 4.4.39. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.39.
 2016-12-15 20:35:24 -05:00
Marius Bakke 80ce42bdbf
gnu: python-argcomplete: Fix tests. 
* gnu/packages/python.scm (python-argcomplete,
  python2-argcomplete)[native-inputs]: Add python-pexpect and tcsh.
 2016-12-16 02:16:23 +01:00
Marius Bakke 58f5fae7c4
gnu: python-widgetsnbextension: Fix tests. 
* gnu/packages/python.scm (python-widgetsnbextension,
  python2-widgetsnbextension)[native-inputs]: Add python-certifi.
 2016-12-16 02:14:54 +01:00
Marius Bakke ed11804309
gnu: python-pexpect: Update to 4.2.1. 
* gnu/packages/python.scm (python-pexpect, python2-pexpect): Update to 4.2.1.
[source]: Use 'pypi-uri'.
[arguments]: Add 'prepare-tests' phase to patch paths and delete network test.
[native-inputs]: Add python-pytest, man-db and which.
[propagated-inputs]: Add python-ptyprocess.
 2016-12-16 02:10:58 +01:00
Marius Bakke 01fb9f6638
gnu: python-axolotl: Remove workaround for bug #20765. 
* gnu/packages/python.scm (python-axolotl, python2-axolotl)[arguments]:
Remove #:configure-flags.
 2016-12-16 01:07:41 +01:00
Marius Bakke 22d7360b16
gnu: Remove python-dateutil@1.5. 
* gnu/packages/python.scm (python-dateutil-2, python2-dateutil-2): Rename to ...
(python-dateutil, python2-dateutil): ... this. Remove 1.5 version.
(python-tzlocal, python2-tzlocal): Adjust variable name.
(python-rst.linker, python2-rst.linker): Likewise.
(pelican): Likewise.
(python-matplotlib, python2-matplotlib): Likewise.
(python-sqlalchemy-utils, python2-sqlalchemy-utils): Likewise.
(python-icalendar, python2-icalendar): Likewise.
(python-botocore, python2-botocore): Likewise.
(python-vobject, python2-vobject): Likewise.
(python-arrow, python2-arrow): Likewise.
(python-fake-factory, python2-fake-factory): Likewise.
(python-freezegun, python2-freezegun): Likewise.
(python-aniso8601, python2-aniso8601): Likewise.
* gnu/packages/jrnl.scm (jrnl): Likewise.
* gnu/packages/calendar.scm (limnoria): Likewise.
 2016-12-16 00:54:48 +01:00
Leo Famulari fb73f07a0f
gnu: guile-irregex: Update to 0.9.6 [fixes CVE-2016-9954]. 
* gnu/packages/guile.scm (guile-irregex): Update to 0.9.6.
 2016-12-15 18:40:19 -05:00
Mathieu Lirzin 44ccd9622e
gnu: cuirass: Update to revision 2. 
* gnu/packages/ci.scm (cuirass): Update to revision 2.
[native-inputs]: Add texinfo.
 2016-12-15 22:50:24 +01:00
Tobias Geerinckx-Rice 177de53784
gnu: libpsl: Update to 0.16.0. 
* gnu/packages/web.scm (libpsl): Update to 0.16.0.
 2016-12-15 21:05:05 +01:00
Marius Bakke 59f74825d6
gnu: python-flask-restplus: Disable tests. 
* gnu/packages/python.scm (python-flask-restplus)[arguments]: Set #:tests? #f.
 2016-12-15 19:56:44 +01:00
Marius Bakke ad348f9f39
gnu: python-gridmap: Disable tests. 
* gnu/packages/python.scm (python-gridmap, python2-gridmap)[arguments]:
Set #:tests? #f.
 2016-12-15 19:50:12 +01:00
Marius Bakke 15c37077bc
gnu: python-hy: Fix test suite. 
* gnu/packages/python.scm (python-hy, python2-hy)[arguments]: Replace 'check'
phase with custom command.
[native-inputs]: Add python-coverage and python-nose.
 2016-12-15 19:49:06 +01:00
Tobias Geerinckx-Rice 426aecfd48
gnu: openconnect: Update to 7.08. 
* gnu/packages/vpn.scm (openconnect): Update to 7.09.
 2016-12-15 19:31:45 +01:00
Marius Bakke 8653c1d557
gnu: python-py3status: Disable tests. 
* gnu/packages/python.scm (python-py3status)[arguments]: Set #:tests? #f.
 2016-12-15 19:09:18 +01:00
Marius Bakke 810f89839c
gnu: python-pylast: Disable tests. 
* gnu/packages/music.scm (python-pylast, python2-pylast)[arguments]:
Set #:tests? #f.
 2016-12-15 19:06:12 +01:00
Marius Bakke 0a70200951
gnu: python-pyserial: Disable tests. 
* gnu/packages/python.scm (python-pyserial, python2-pyserial)[arguments]:
Set #:tests? #f.
 2016-12-15 18:42:22 +01:00
Marius Bakke 8bd5164b4a
gnu: python-pystache: Disable tests for python3 variant. 
* gnu/packages/python.scm (python-pystache)[arguments]: Disable tests.
[properties]: New field. Delay python2 variant.
(python2-pystache)[arguments]: Replace 'check' phase with custom command.
 2016-12-15 18:35:21 +01:00
Marius Bakke 1f31a5e0bf
gnu: python-pytest-django: Disable tests. 
* gnu/packages/django.scm (python-pytest-django,
  python2-pytest-django)[arguments]: Set #:tests? #f.
 2016-12-15 18:19:34 +01:00
Marius Bakke 4eb385fb33
gnu: python-pytest-xdist: Disable tests. 
* gnu/packages/python.scm (python-pytest-xdist,
  python2-pytest-xdist)[arguments]: Set #:tests? #f.
 2016-12-15 18:11:43 +01:00
Marius Bakke 9e378e6a5c
gnu: python-reportlab: Fix tests. 
* gnu/packages/pdf.scm (python-reportlab, python2-reportlab)[arguments]:
Set #:test-target.
 2016-12-15 17:55:36 +01:00
Marius Bakke 444464ec28
gnu: python-rpy2: Fix tests. 
* gnu/packages/python.scm (python-rpy2, python2-rpy2)[arguments]: Replace
  check phase with custom post-install command.
 2016-12-15 17:55:36 +01:00
Marius Bakke 6f976df677
gnu: python-seaborn: Disable tests. 
* gnu/packages/python.scm (python-seaborn, python2-seaborn)[arguments]:
  Disable tests.
 2016-12-15 17:31:29 +01:00
Marius Bakke 35d56b7b60
gnu: python-sqlalchemy-utils: Disable tests. 
* gnu/packages/python.scm (python-sqlalchemy-utils,
  python2-sqlalchemy-utils)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-dateutil-2, python-flexmock, python-pcycopg2 and
  python-pytz.
 2016-12-15 17:26:42 +01:00
Thomas Danckaert 7781afde65
gnu: Add kdevelop. 
* gnu/packages/kde.scm (kdevelop): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-15 17:11:32 +01:00
Thomas Danckaert c02c8cf4a8
gnu: Add kdevplatform. 
* gnu/packages/kde.scm (kdevplatform): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-15 17:09:27 +01:00
Thomas Danckaert 7c1a52090d
gnu: libksysguard: Correct inputs. 
* gnu/packages/kde.scm (libksysguard)[inputs]: Remove kdbusaddons,
  kdoctools, kinit, knewstruff, knotifications, kio; add kauth,
  kcompletion, kconfig, kcoreaddons, kwidgetsaddons.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-15 17:06:49 +01:00
Marius Bakke bfba083684
gnu: python-keystoneclient: Disable tests. 
* gnu/packages/openstack.scm (python-keystoneclient,
  python2-keystoneclient)[arguments]: Set #:tests? #f.
 2016-12-15 16:55:17 +01:00
Chris Marusich eee7878f4e
gnu: gnome-settings-daemon: Add dependency on NetworkManager. 
* gnu/packages/gnome.scm (gnome-settings-daemon)[arguments]: Remove
"--disable-network-manager".
[inputs]: Add NETWORK-MANAGER.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-15 16:51:11 +01:00
Chris Marusich fd070f35d3
gnu: network-manager: Enable session tracking with elogind. 
* gnu/packages/gnome.scm (network-manager): Add configuration options
  "--with-systemd-logind=yes" (so we can use elogind to track login sessions)
  and "--with-consolekit=no" (so we don't use consolekit to track sessions,
  since it isn't packaged yet).  Add elogind as an input, and add a snippet to
  replace some references to systemd with elogind.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-15 16:50:48 +01:00
Marius Bakke c616b5d3b5
gnu: python-oauthlib: Fix tests. 
* gnu/packages/python.scm (python-oauthlib)[native-inputs]:
  Add python-mock.
(python2-oauthlib)[native-inputs]: Inherit python-mock.
 2016-12-15 16:50:15 +01:00
Marius Bakke f959495ba0
gnu: python-tempest-lib: Disable tests. 
* gnu/packages/openstack.scm (python-tempest-lib,
  python2-tempest-lib)[arguments]: Set #:tests? #f.
 2016-12-15 15:23:39 +01:00
Marius Bakke 73b494a11d
gnu: python-oslo.log: Disable tests. 
* gnu/packages/openstack.scm (python-oslo.log, python2-oslo.log)[arguments]:
  Set #:tests? #f.
 2016-12-15 15:22:16 +01:00
Marius Bakke 49910e6a7c
gnu: python-paramiko: Disable tests. 
* gnu/packages/python.scm (python-paramiko, python2-paramiko)[arguments]:
Set #:tests? #f.
 2016-12-15 14:01:27 +01:00
Marius Bakke 5ae31b547c
gnu: python-oslo.serialization: Disable tests. 
* gnu/packages/openstack.scm (python-oslo.serialization,
  python2-oslo.serialization)[arguments]: Set #:tests? #f.
 2016-12-15 13:55:54 +01:00
Marius Bakke ad59ebda53
gnu: python-oslo.utils: Disable tests. 
* gnu/packages/openstack.scm (python-oslo.utils,
  python2-oslo.utils)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-bandit and python-oslo.config.
 2016-12-15 13:50:55 +01:00
Marius Bakke d9184f4f76
gnu: python-oslo.config: Disable tests. 
* gnu/packages/openstack.scm (python-oslo.config,
  python2-oslo.config)[arguments]: Set #:tests? #f.
 2016-12-15 13:49:08 +01:00
Marius Bakke 130f68ec3b
gnu: python-stevedore: Fix tests. 
* gnu/packages/openstack.scm (python-stevedore,
  python2-stevedore)[native-inputs]: Add python-discover, python-oslosphinx,
  python-sphinx and python-testrepository.
 2016-12-15 13:45:07 +01:00
Marius Bakke bb56d9a18c
gnu: python-oslo.i18n: Disable tests. 
* gnu/packages/openstack.scm (python-oslo.i18n, python2-oslo.i18n)[arguments]:
  Set #:tests? #f.
 2016-12-15 13:35:57 +01:00
Marius Bakke f30e53369b
gnu: python-oslo.context: Disable tests. 
* gnu/packages/openstack.scm (python-oslo.context,
  python2-oslo.context)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-coverage, python-hacking, python-mock,
  python-os-client-config, python-oslosphinx and python-sphinx.
 2016-12-15 13:33:16 +01:00
Marius Bakke 767c7e0ed1
gnu: python-debtcollector: Disable tests. 
* gnu/packages/openstack.scm (python-debtcollector,
  python2-debtcollector)[arguments]: Set #:tests? #f.
 2016-12-15 13:23:56 +01:00
Marius Bakke 7917a13554
gnu: python-termstyle: Fix tests. 
* gnu/packages/python.scm (python-termstyle)[arguments]: Replace 'check' phase
with custom command.
 2016-12-15 13:17:29 +01:00
Marius Bakke a960e73fad
gnu: python-twisted: Disable tests. 
* gnu/packages/python.scm (python-twisted, python2-twisted)[arguments]:
Set #:tests? #f.
 2016-12-15 13:13:23 +01:00
Marius Bakke a74f9b12ae
gnu: python-zope-security: Disable tests. 
* gnu/packages/python.scm (python-zope-security,
  python2-zope-security)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-six.
 2016-12-15 12:45:26 +01:00
Marius Bakke 40bb8e07ae
gnu: python-zope-location: Disable tests. 
* gnu/packages/python.scm (python-zope-location,
  python2-zope-location)[arguments]: Set #:tests? #f.
 2016-12-15 12:42:39 +01:00
Marius Bakke 66b3aadb73
gnu: python-zope-proxy: Disable tests. 
* gnu/packages/python.scm (python-zope-proxy, python2-zope-proxy)[arguments]:
  Set #:tests? #f.
 2016-12-15 12:40:10 +01:00
Marius Bakke 7e8b1bfa4b
gnu: python-zope-configuration: Disable tests. 
* gnu/packages/python.scm (python-zope-configuration,
  python2-zope-configuration)[arguments]: Set #:tests? #f.
 2016-12-15 12:38:04 +01:00
Marius Bakke 22dba2eff9
gnu: python-zope-interface: Disable tests. 
* gnu/packages/python.scm (python-zope-schema,
  python2-zope-schema)[arguments]: Set #:tests? #f.
 2016-12-15 12:35:26 +01:00
Marius Bakke 385871e5f7
gnu: python-zope-testrunner: Disable tests. 
* gnu/packages/python.scm (python-zope-testrunner,
  python2-zope-testrunner)[arguments]: Set #:tests? #f.
 2016-12-15 12:12:13 +01:00
Marius Bakke 7b93d86670
gnu: snakemake: Update to 3.9.0. 
* gnu/packages/python.scm (snakemake): Update to 3.9.0.
[source]: Use 'pypi-uri'.
[arguments]: Disable tests.
[home-page]: Update.
 2016-12-15 10:12:38 +01:00
Marius Bakke 972cf9be52
gnu: python-ly: Disable tests. 
* gnu/packages/python.scm (python-ly): Set #:tests? #f.
 2016-12-15 10:02:41 +01:00
Mark H Weaver 48ef3f9d9c
gnu: icecat: Label patches that have since been assigned CVEs. 
Document that the following CVEs are fixed: CVE-2016-9893, CVE-2016-9895,
CVE-2016-9897, CVE-2016-9898, CVE-2016-9899, CVE-2016-9900, CVE-2016-9901,
CVE-2016-9902, CVE-2016-9904, and CVE-2016-9905.  Note that these are all of
the CVEs fixed in Firefox ESR 45.6.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add comments to patches that
have since been assigned CVEs.
 2016-12-14 19:55:26 -05:00
Marius Bakke 9026e6890a
gnu: python-scikit-image: Disable tests. 
* gnu/packages/python.scm (python-scikit-image,
  python2-scikit-image)[arguments]: Set #:tests? #f.
 2016-12-14 23:01:40 +01:00
Marius Bakke bfce8a344d
gnu: python-jedi: Disable tests. 
* gnu/packages/python.scm (python-jedi, python2-jedi)[arguments]: Disable
  tests.
  [native-inputs]: Add python-pytest.
 2016-12-14 22:59:56 +01:00
Marius Bakke ee4722411f
gnu: python-rdflib: Disable tests. 
* gnu/packages/rdf.scm (python-rdflib)[arguments]: Set #:tests? #f.
[native-inputs]: Add python-nose.
(python2-rdflib)[inputs]: Remove field. Use 'package-with-python2'.
 2016-12-14 22:24:50 +01:00
Tobias Geerinckx-Rice 0c6c9c00ab
gnu: Update more dead Google Code home pages. 
* gnu/packages/bioinformatics.scm (cutadapt, mosaik, pepr)[home-page]:
Update to their respective replacements.
 2016-12-14 22:08:51 +01:00
Marius Bakke 6145b60462
gnu: python-clint: Fix tests. 
* gnu/packages/python.scm (python-clint, python2-clint)[native-inputs]: Add
  python-pytest.
  [arguments]: Replace 'check' phase with custom command.
 2016-12-14 22:07:38 +01:00
Marius Bakke b7f3ea9532
gnu: python-fake-factory: Fix tests. 
* gnu/packages/python.scm (python-fake-factory,
  python2-fake-factory)[arguments]: Replace 'check' phase with custom command.
 2016-12-14 22:01:36 +01:00
Tobias Geerinckx-Rice 62d652a710
gnu: mdds: Replace dead Google Code home-page. 
* gnu/packages/boost.scm (mdds)[home-page]: Update it.
 2016-12-14 21:59:40 +01:00
Tobias Geerinckx-Rice 50995554f8
gnu: chibi-scheme: Replace dead Google Code home-page. 
* gnu/packages/scheme.scm (chibi-scheme)[home-page]: Update it.
 2016-12-14 21:59:39 +01:00
Tobias Geerinckx-Rice 6b7877e12c
gnu: python-mock: Update source and home-page URIs. 
* gnu/packages/python.scm (python-mock)[source]: Use ‘pypi-uri’.
[home-page]: Replace dead Google Code home page.
 2016-12-14 21:59:39 +01:00
Ricardo Wurmus 958f657656
gnu: libosinfo: Use stable URL for pci.ids. 
* gnu/packages/qemu.scm (libosinfo)[native-inputs]: Use a stable URL for
the pci.ids file.
 2016-12-14 21:58:32 +01:00
Marius Bakke f620311a39
gnu: python-pyaml: Fix tests. 
* gnu/packages/python.scm (python-pyaml, python2-pyaml)[native-inputs]: Add
  python-unidecode.
 2016-12-14 19:53:21 +01:00
Marius Bakke e912752567
gnu: python-inflection: Fix test requirements. 
* gnu/packages/python.scm (python-inflection,
  python2-inflection)[native-inputs]: Add python-pytest.
 2016-12-14 19:50:44 +01:00
Marius Bakke 877fdac9e3
gnu: python-botocore: Disable tests. 
* gnu/packages/python.scm (python-botocore, python2-botocore): Set #:tests? #f.
 2016-12-14 19:49:35 +01:00
Marius Bakke 52a75a83f9
gnu: python-jmespath: Fix tests. 
* gnu/packages/python.scm (python-jmespath, python2-jmespath)[native-inputs]:
  Add python-nose.
 2016-12-14 19:45:46 +01:00
Marius Bakke 1b6d7c3f3f
gnu: python2-fastlmm: Fix test requirements. 
* gnu/packages/python.scm (python2-fastlmm)[native-inputs]: Add python2-nose.
 2016-12-14 19:38:50 +01:00
Marius Bakke da5ebd1007
gnu: python-biom-format: Fix tests. 
* gnu/packages/bioinformatics.scm (python-biom-format,
  python2-biom-format)[native-inputs]: Add python-nose.
 2016-12-14 19:18:26 +01:00
Marius Bakke 27fab2bf65
gnu: python-cryptography: Update to 1.7.1. 
* gnu/packages/python.scm (python-cryptography, python2-cryptography): Update
  to 1.7.1.
  [arguments]: Remove field.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.7.1.
 2016-12-14 19:12:14 +01:00
Tobias Geerinckx-Rice 938f66cb86
gnu: man-pages: Update to 4.09. 
* gnu/packages/man.scm (man-pages): Update to 4.09.
 2016-12-14 19:09:49 +01:00
Marius Bakke 30e0229a17
gnu: python-pyopenssl: Disable tests. 
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl)[arguments]:
Set #:tests? #f.
[native-inputs]: Add python-pytest.
 2016-12-14 18:36:52 +01:00
Marius Bakke bd100c7112
gnu: python-hypothesis: Don't propagate test inputs. 
* gnu/packages/python.scm (python-hypothesis,
  python2-hypothesis)[propagated-inputs]: Move everything from here ...
  [native-inputs]: ... to here.
(python2-hypothesis)[native-inputs]: Append inherited native-inputs.
 2016-12-14 17:35:28 +01:00
David Craven ecee21473b
gnu: Add rustc. 
* gnu/packages/rust.scm (rustc): New variable.

Co-authored-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
 2016-12-14 16:30:43 +01:00
David Craven 423f9e4494
gnu: Add rust bootstrap binaries. 
* gnu/packages/rust.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add rust.scm.
 2016-12-14 16:30:42 +01:00
David Craven 22897187c1
gnu: llvm: Enable install utils. 
* gnu/packages/llvm.scm (llvm)[arguments]: Add -DLLVM_INSTALL_UTILS=ON
  to configure-flags.
 2016-12-14 16:30:42 +01:00
Leo Famulari 7ab3ea4266
gnu: nss, nss-certs: Update to 3.27.2. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.27.2.
* gnu/packages/certs.scm (nss-certs): Update to 3.27.2.
 2016-12-14 10:19:32 -05:00
Leo Famulari 5ac6b841c2
gnu: icedtea-8: Update to 3.2.0 [fixes CVE-2016-{5542,5554,5568,5573,5582,5597}]. 
* gnu/packages/java.scm (icedtea-8): Update to 3.2.0.
[arguments]: Pass '--disable-system-pcsc' and '--disable-system-sctp'
to #:configure-flags.
 2016-12-14 10:19:32 -05:00
Leo Famulari ab129dac7d
gnu: icedtea-7: Update to 2.6.8 [fixes CVE-2016-{5542,5554,5568,5573,5582,5597}] 
* gnu/packages/java.scm (icedtea-7): Update to 2.6.8.
 2016-12-14 10:19:29 -05:00
Marius Bakke 497355dc09
gnu: python-nbconvert: Disable tests. 
* gnu/packages/python.scm (python-nbconvert, python2-nbconvert)[arguments]:
Set #:tests? #f.
[native-inputs]: Add python-pytest.
 2016-12-14 12:59:40 +01:00
Marius Bakke 63b02364aa
gnu: python-iso8601: Fix test dependencies. 
* gnu/packages/python.scm (python-iso8601, python2-iso8601)[native-inputs]:
  Add python-pytest.
 2016-12-14 12:47:22 +01:00
Marius Bakke 55ab64516b
gnu: python-django-filter: Fix test suite. 
* gnu/packages/django.scm (python-django-filter,
  python2-django-filter)[arguments]: Replace 'check' phase with custom command.
 2016-12-14 12:43:36 +01:00
Marius Bakke 281cc11c8e
gnu: python-django-simple-math-captcha: Disable tests. 
* gnu/packages/django.scm (python-django-simple-math-captcha,
  python2-django-simple-math-captcha)[arguments]: Set #:tests? #f.
 2016-12-14 12:40:13 +01:00
Marius Bakke ea8907c5d5
gnu: python-mox3: Disable tests. 
* gnu/packages/openstack.scm (python-mox3, python2-mox3)[arguments]: Disable
  tests.
  [native-inputs]: Add python-oslosphinx and python-sphinx.
 2016-12-14 12:02:45 +01:00
Ben Woodcroft ce3f92e701
gnu: Add r-bit64. 
* gnu/packages/statistics.scm (r-bit64): New variable.
 2016-12-14 20:43:28 +10:00
Ben Woodcroft 42066e6b4a
gnu: Add r-bit. 
* gnu/packages/statistics.scm (r-bit): New variable.
 2016-12-14 20:43:28 +10:00
Marius Bakke 2ff4559b49
gnu: python-hacking: Disable tests. 
* gnu/packages/openstack.scm (python-hacking, python2-hacking)[arguments]:
Set #:tests? #f.
 2016-12-14 11:40:34 +01:00
Marius Bakke a717e8a698
gnu: python-flake8-2.2.4: Disable tests. 
* gnu/packages/python.scm (python-flake8-2.2.4,
  python2-flake8-2.2.4)[arguments]: Set #:tests? #f.
 2016-12-14 11:40:25 +01:00
Marius Bakke 73e3060d57
gnu: python-pep8-1.5.7: Disable tests. 
* gnu/packages/python.scm (python-pep8-1.5.7, python2-pep8-1.5.7)[arguments]:
Set #:tests? #f.
 2016-12-14 11:21:50 +01:00
Marius Bakke 0d84e1ef22
gnu: python-pyflakes-0.8.1: Disable tests. 
* gnu/packages/python.scm (python-pyflakes-0.8.1,
  python2-pyflakes-0.8.1)[arguments]: Set #:tests? #f.
 2016-12-14 11:19:11 +01:00
Marius Bakke 90110ef956
gnu: python-testrepository: Disable tests. 
* gnu/packages/python.scm (python-testrepository, python2-testrepository):
Set #:tests? #f.
 2016-12-14 10:46:47 +01:00
Marius Bakke f6c1ef1804
gnu: python-fixtures: Fix test suite. 
* gnu/packages/python.scm (python-fixtures, python2-fixtures): Replace 'check'
  with custom phase.
  [native-inputs]: Add python-mock.
 2016-12-14 10:40:21 +01:00
Marius Bakke fb08c4fedc
gnu: python-psutil: Disable tests. 
* gnu/packages/python.scm (python-psutil, python2-psutil): Disable tests.
 2016-12-14 10:18:33 +01:00
Mark H Weaver 5a3849443a
gnu: linux-libre: Update to 4.9. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.
* gnu/packages/linux-libre-4.8-x86_64.conf,
gnu/packages/linux-libre-4.8-i686.conf: Delete files.
* gnu/packages/linux-libre-4.9-x86_64.conf,
gnu/packages/linux-libre-4.9-i686.conf: New files.
* Makefile.am (KCONFIGS): Update accordingly.
 2016-12-14 03:27:26 -05:00
Ludovic Courtès 4fbd0f4f86
gnu: guile-next: Update to 2.1.5. 
* gnu/packages/guile.scm (guile-next): Update to 2.1.5.
[properties]: Add 'upstream-name', 'ftp-server', and 'ftp-directory'.
 2016-12-14 08:48:38 +01:00
Leo Famulari 9d3a15b496
gnu: python-sphinx-rtd-theme: Build with python-sphinx. 
* gnu/packages/python.scm (python-sphinx-rtd-theme,
python2-sphinx-rtd-theme)[propagated-inputs]: Add python-sphinx.
 2016-12-13 20:54:34 -05:00
Leo Famulari 2b9e4bead9
gnu: python-zope-schema: Build with python-zope-exceptions. 
* gnu/packages/python.scm (python-zope-schema,
python2-zope-schema)[propagated-inputs]: Add python-zope-schema.
 2016-12-13 20:54:29 -05:00
Ludovic Courtès e8a463e646
gnu: usbutils: Update to 008. 
* gnu/packages/linux.scm (usbutils): Update to 008.
[inputs]: Add EUDEV.
 2016-12-14 00:22:49 +01:00
Ludovic Courtès 3232613e63
gnu: wireless-regdb: Update to 2016.06.10. 
* gnu/packages/linux.scm (wireless-regdb): Update to 2016.06.10.
 2016-12-14 00:22:49 +01:00
Marius Bakke a792e1aa8d
gnu: python-cairocffi: Disable tests. 
* gnu/packages/python.scm (python-cairocffi, python2-cairocffi)[arguments]:
Set #:tests? #f.
 2016-12-13 17:04:20 -05:00
Marius Bakke 6734c7bae3
gnu: python-cairocffi: Use 'modify-phases' syntax. 
* gnu/packages/python.scm (python-cairocffi)[arguments]: Use 'modify-phases'.
 2016-12-13 17:04:20 -05:00
Marius Bakke e2816ac72d
gnu: python-xcffib: Disable tests. 
* gnu/packages/python.scm (python-xcffib, python2-xcffib)[arguments]:
Set #:tests? #f.
 2016-12-13 17:04:20 -05:00
Marius Bakke c8cd850c87
gnu: python-xcffib: Use 'modify-phases' syntax. 
* gnu/packages/python.scm (python-xcffib)[arguments]: Use 'modify-phases'.
 2016-12-13 17:04:19 -05:00
Marius Bakke cff0ccf9dc
gnu: python-requests: Disable tests. 
* gnu/packages/python.scm (python-requests, python2-requests,
python-requests-2.7)[native-inputs]: Remove field.
[arguments]: New field. Set #:tests? #f.
 2016-12-13 17:04:19 -05:00
Marius Bakke 97be1bc231
gnu: python-click: Fix tests. 
* gnu/packages/python.scm (python-click, python2-click)[arguments]: Replace
'check' with custom phase.
[native-inputs]: Add python-pytest.
 2016-12-13 17:04:19 -05:00
Marius Bakke 3fe2c209e0
gnu: python-tornado: Disable tests. 
* gnu/packages/python.scm (python-tornado, python2-tornado)[arguments]:
Set #:tests? #f.
 2016-12-13 17:04:19 -05:00
Marius Bakke 03cb5f9edb
gnu: python-sphinx: Disable tests. 
* gnu/packages/python.scm (python-sphinx, python2-sphinx)[arguments]:
Set #:tests? #f.
 2016-12-13 17:04:18 -05:00
Marius Bakke 995cb99e4b
gnu: python-pygments: Disable tests. 
* gnu/packages/python.scm (python-pygments, python2-pygments)[arguments]:
Set #:tests? #f.
 2016-12-13 17:04:18 -05:00
Marius Bakke bd10e677d1
gnu: python-coverage: Disable tests. 
* gnu/packages/python.scm (python-coverage, python2-coverage)[arguments]:
Set #:tests? #f.
 2016-12-13 17:04:18 -05:00
Marius Bakke 4fd129ee86
gnu: python-six: Fix test dependencies. 
* gnu/packages/python.scm (python-six, python2-six)[native-inputs]: Add
python-py and python-pytest.
 2016-12-13 17:04:18 -05:00
Marius Bakke dcb0da7bff
gnu: python-py: Disable tests. 
* gnu/packages/python.scm (python-py, python2-py)[arguments]: Set #:tests? #f.
 2016-12-13 21:04:31 +01:00
Marius Bakke 3f1b4bc316
gnu: xf86-input-keyboard: Update to 1.9.0. 
* gnu/packages/xorg.scm (xf86-input-keyboard): Update to 1.9.0.
 2016-12-13 20:39:01 +01:00
Marius Bakke 12f3af5f1a
gnu: xf86-video-ati: Update to 7.8.0. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 7.8.0.
 2016-12-13 20:37:13 +01:00
Marius Bakke 546856a3de
gnu: xf86-input-libinput: Update to 0.23.0. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.23.0.
 2016-12-13 20:31:29 +01:00
Tobias Geerinckx-Rice d7f84eab02
gnu: iproute2: Update to 4.9.0. 
* gnu/packages/linux.scm (iproute2): Update to 4.9.0.
[home-page]: Point to the latest attempt, and use HTTPS.
 2016-12-13 19:32:34 +01:00
Alex Kost bee075e706
gnu: libjpeg-turbo: Fix typo. 
This is a followup to commit e90a706e16.

* gnu/packages/image.scm (libjpeg-turbo): Remove extra "\".
 2016-12-13 19:56:07 +03:00
Ludovic Courtès 1975ec69e7
gnu: epic5: Fix 'license' field to contain only licenses. 
* gnu/packages/irc.scm (epic5)[license]: Call 'license:non-copyleft'.
 2016-12-13 17:24:30 +01:00
Efraim Flashner 1d0814670c
gnu: python-pyqt: Update to 5.7. 
* gnu/packages/qt.scm (python-pyqt): Update to 5.7.
 2016-12-13 15:11:25 +02:00
Efraim Flashner e5a12fba82
gnu: onionshare: Update to 0.9.2 (fixes CVE-2016-5026). 
* gnu/packages/tor.scm (onionshare): Update to 0.9.2.
[source]: Remove patch.
[arguments]: Update substitutions for new version.
* gnu/packages/patches/onionshare-fix-install-paths.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-12-13 13:12:31 +02:00
Ben Woodcroft 991e143d25
gnu: diamond: Update to 0.8.29. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.29.
 2016-12-13 20:01:56 +10:00
Ben Woodcroft ced1c496aa
gnu: orfm: Update to 0.6.1. 
* gnu/packages/bioinformatics.scm (orfm): Update to 0.6.1.
 2016-12-13 20:00:50 +10:00
Efraim Flashner 310248c621
gnu: libsrtp: Fix building on mips. 
* gnu/packages/telephony.scm (libsrtp)[arguments]: Add substitution
changing variable name from 'mips' to 'mips_value'. Also substitute
dictionary location in test suite.
 2016-12-13 11:15:49 +02:00
Efraim Flashner 6f09178d2a
gnu: libsrtp: Have source use file-name. 
* gnu/packages/telephony.scm (libsrtp)[source]: Add file-name field.
 2016-12-13 11:15:48 +02:00
Efraim Flashner e90a706e16
gnu: libjpeg-turbo: Fix build on mips. 
* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add substitution to
set variable type before use.
 2016-12-13 11:15:32 +02:00
Marius Bakke 61dd253f8e
gnu: lftp: Update to 4.7.4. 
* gnu/packages/ftp.scm (lftp): Update to 4.7.4.
[home-page]: Change to new domain.
[source]: Adjust to new domain. Add mirror.
 2016-12-13 09:38:01 +01:00
Marius Bakke d660f7be6d
gnu: python-setuptools: Update to 31.0.0. 
* gnu/packages/python.scm (python-setuptools, python2-setuptools): Update to
31.0.0.
[source]: Use 'pypi-uri'.
[license]: Update for bundled libraries.
 2016-12-13 09:37:49 +01:00
Marius Bakke ad04bd6b2a
gnu: duplicity: Use 'modify-phases' syntax. 
* gnu/packages/backup.scm (duplicity)[arguments]: Use 'modify-phases'.
 2016-12-13 09:37:43 +01:00
Tobias Geerinckx-Rice 7843f276d1
gnu: xf86-video-nouveau: Update to 1.0.13. 
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.13.
 2016-12-13 04:59:22 +01:00
Tobias Geerinckx-Rice 80a612dccf
gnu: xf86-input-synaptics: Update to 1.9.0. 
* gnu/packages/xorg.scm (xf86-input-synaptics): Update to 1.9.0.
 2016-12-13 04:50:28 +01:00
Tobias Geerinckx-Rice f63491a385
gnu: xf86-input-mouse: Update to 1.9.2. 
* gnu/packages/xorg.scm (xf86-input-mouse): Update to 1.9.2.
 2016-12-13 04:50:28 +01:00
Tobias Geerinckx-Rice 5de2ec6deb
gnu: xf86-input-joystick: Update to 1.6.3. 
* gnu/packages/xorg.scm (xf86-input-joystick): Update to 1.6.3.
 2016-12-13 04:50:28 +01:00
Tobias Geerinckx-Rice 08cf3e4ce5
gnu: xf86-input-evdev: Update to 2.10.4. 
* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.4.
 2016-12-13 04:50:27 +01:00
Tobias Geerinckx-Rice 2f79bbfc01
gnu: nano: Update to 2.7.2. 
* gnu/packages/nano.scm (nano): Update to 2.7.2.
 2016-12-13 04:30:04 +01:00
Tobias Geerinckx-Rice 68a9d6df5e
gnu: perl-dbix-class-introspectablem2m: Update source tarball URL. 
* gnu/packages/perl.scm (perl-dbix-class-introspectablem2m)[source]: Update
tarball URL.
 2016-12-12 22:08:45 +01:00
Tobias Geerinckx-Rice 32fd260076
gnu: cssc: Update to 1.4.0. 
* gnu/packages/version-control.scm (cssc): Update to 1.4.0.
[source]: Remove unneeded patches (i.e. all of them).
* gnu/packages/patches/cssc-gets-undeclared.patch: Delete file.
* gnu/packages/patches/cssc-missing-include.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Remove deleted patches.
 2016-12-12 22:08:45 +01:00
Tobias Geerinckx-Rice bea3cf4b90
gnu: gsl: Update to 2.3. 
* gnu/packages/maths.scm (gsl): Update to 2.3.
 2016-12-12 22:08:45 +01:00
Tobias Geerinckx-Rice 469846a7ba
gnu: vim: Update to 8.0.0133. 
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0133.
 2016-12-12 22:08:44 +01:00
Kei Kebreau b43ec33b6d
gnu: denemo: Change default preferences to use the already-present lilypond. 
* gnu/packages/music.scm (denemo)[progpagated-inputs]: Move lilypond to ...
[inputs]: ... here.
[phases]: New phase set-lilypond.
 2016-12-12 12:16:17 -05:00
Efraim Flashner 987ad88fb6
gnu: calibre: Update to 2.74.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.74.0.
 2016-12-12 16:14:30 +02:00
Efraim Flashner 0468eddafb
gnu: python-sip: Update to 4.18.1. 
* gnu/packages/qt.scm (python-sip): Update to 4.18.1.
 2016-12-12 16:14:30 +02:00
Efraim Flashner f9513086c4
gnu: python-pyqt-4: Use 'modify-phases' syntax. 
* gnu/packages/qt.scm (python-pyqt-4)[arguments]: Use 'modify-phases'
syntax.
 2016-12-12 16:14:30 +02:00
Efraim Flashner a0bc2d45eb
gnu: python-pyqt@5.5: Remove variable. 
* gnu/packages/qt.scm (python-pyqt@5.5, python2-pyqt@5.5): Remove them.
 2016-12-12 16:14:29 +02:00
Efraim Flashner c5ea912016
gnu: calibre: Update qt dependancies. 
* gnu/packages/ebook.scm (calibre)[native-inputs]: Remove qt, add
qtbase.
[inputs]: Remove qt, replace python2-pyqt@5.5 with python2-pyqt.
 2016-12-12 16:14:29 +02:00
Efraim Flashner e9adcd81b1
gnu: python-pyqt: Build with more qt modules. 
* gnu/packages/qt.scm (python-pyqt)[inputs]: Add qtbase, qtconnectivity,
qtdeclarative, qtlocation, qtmultimedia, qtsensors, qtserialport, qtsvg,
qttools, qtwebchannel, qtwebkit, qtwebsockets, qtx11extras,
qtxmlpatterns.
(python2-pyqt)[inputs]: Same.
(python-pyqt@4)[inputs]: Only use python.
 2016-12-12 16:14:24 +02:00
Ben Woodcroft 2df3d147ef
gnu: orfm: Update to 0.6.0. 
* gnu/packages/bioinformatics.scm (orfm): Update to 0.6.0.
 2016-12-12 20:49:31 +10:00
Christopher Baines 23b40c6625
gnu: direnv: Update to 2.10.0. 
* gnu/packages/shellutils.scm (direnv): Update to 2.10.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-11 17:58:55 -05:00
Leo Famulari 4a990395d7
Merge branch 'staging' 2016-12-11 15:03:52 -05:00
Danny Milosavljevic 0c6fc4b7e5
gnu: sunxi-tools: Update to 1.4.2. 
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-11 14:14:31 -05:00
Marius Bakke 4eb6ed28a3
gnu: python-html5lib: Add dependency on python-webencodings. 
* gnu/packages/python.scm (python-html5lib,
python2-html5lib)[propagated-inputs]: Add python-webencodings.
 2016-12-11 20:09:26 +01:00
Marius Bakke adbca19e83
gnu: Add python-webencodings. 
* gnu/packages/python.scm (python-webencodings, python2-webencodings): New
variables.
 2016-12-11 20:09:23 +01:00
Mark H Weaver 81d6fd2457
gnu: linux-libre: Update to 4.8.14. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.14.  Remove patches.
(linux-libre-arm-generic): Remove patches.
 2016-12-11 09:51:10 -05:00
Mark H Weaver 762bc71e21
gnu: linux-libre@4.4: Update to 4.4.38. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.38.
Remove patches.
 2016-12-11 09:51:08 -05:00
Ricardo Wurmus 0ff55f9d77
gnu: fcgi: Disable parallel building. 
* gnu/packages/web.scm (fcgi)[arguments]: Disable parallel building.
 2016-12-11 15:18:36 +01:00
Tobias Geerinckx-Rice 1ce6f33b0c
gnu: Add sshoot. 
* gnu/packages/vpn.scm (sshoot): New variable.
 2016-12-11 11:58:41 +01:00
Tobias Geerinckx-Rice 6c2e82bcb7
gnu: Add python-argcomplete. 
* gnu/packages/python.scm (python-argcomplete): New variable.
 2016-12-11 11:58:40 +01:00
Tobias Geerinckx-Rice 5c863d57ff
gnu: Add sshuttle. 
* gnu/packages/vpn.scm (sshuttle): New variable.
 2016-12-11 11:58:40 +01:00
Leo Famulari 5ce09ef18f
gnu: openjpeg-2.1.2: Use a meaningful file-name for the source code. 
This is a followup to commit 0e8b7b1c35.

* gnu/packages/image.scm (openjpeg-2.1.2)[source]: Give a meaningful
file-name.
 2016-12-11 02:25:16 -05:00
Leo Famulari b245f7589e
gnu: diffoscope: Update to 63. 
* gnu/packages/package-management.scm (diffoscope): Update to 63.
[arguments]: Remove obsolete 'disable-failing-test' and 'disable-egg-zipping'
phases. The former was fixed upstream, and the latter is fixed by the new Python
build system.
 2016-12-11 02:04:38 -05:00
Leo Famulari 0e8b7b1c35
gnu: openjpeg: Update replacement to 2.1.2 [fixes CVE-2016-{7445,8332}]. 
* gnu/packages/image.scm (openjpeg/fixed): Replace variable with ...
(openjpeg-2.1.2): ... this.
[patches]: Remove patches inherited from openjpeg.
(openjpeg)[replacement]: Replace with openjpeg-2.1.2.
 2016-12-11 02:04:31 -05:00
Mark H Weaver d94691e0c2
Merge branch 'master' into staging 2016-12-10 23:03:57 -05:00
Kei Kebreau edd1652e0a
gnu: Add denemo. 
* gnu/packages/music.scm (denemo): New variable.
 2016-12-10 19:40:01 -05:00
Tobias Geerinckx-Rice 14f4a46c98
gnu: libpsl: Update to 0.16.0. 
* gnu/packages/web.scm (libpsl): Update to 0.16.0.
 2016-12-11 00:50:13 +01:00
David Craven e31b75f22f
gnu: Add ocaml-menhir. 
* gnu/packages/ocaml.scm (ocaml-menhir): New variable.
 2016-12-10 21:47:08 +01:00
David Craven 2694d1dc80
gnu: coq: Update to 8.5pl2. 
* gnu/packages/ocaml.scm (coq): Update to 8.5pl2.
  [arguments]: Configure script takes single hyphen arguments.
 2016-12-10 21:47:08 +01:00
David Craven 60bc622b1d
gnu: idris: Update to 0.12.3. 
* gnu/packages/haskell.scm (idris): Update to 0.12.3.
  [origin]: Remove snippet.
  [inputs]: Add ghc-aeson, ghc-async, ghc-fsnotify, ghc-regex-tdfa,
  ghc-tasty-golden, ghc-tasty-rerun and ghc-terminal-size.
  [arguments]: Disable tests.
 2016-12-10 21:47:08 +01:00
David Craven 3ea25176f0
gnu: ghc-trifecta: Update to 1.6. 
* gnu/packages/haskell.scm (ghc-trifecta): Update to 1.6.
  [inputs]: Add ghc-doctest and ghc-quickcheck.
  [arguments]: Enable tests.
 2016-12-10 21:47:08 +01:00
David Craven 4e05c326ef
gnu: Add ghc-terminal-size. 
* gnu/packages/haskell.scm (ghc-terminal-size): New variable.
 2016-12-10 21:47:08 +01:00
David Craven 5e6cafe157
gnu: Add ghc-ieee754. 
* gnu/packages/haskell.scm (ghc-ieee754): New variable.
 2016-12-10 21:47:07 +01:00
David Craven f7e624b639
gnu: Add ghc-tasty-rerun. 
* gnu/packages/haskell.scm (ghc-tasty-rerun): New variable.
 2016-12-10 21:47:07 +01:00
David Craven b7f96285a5
gnu: Add ghc-fsnotify. 
* gnu/packages/haskell.scm (ghc-fsnotify): New variable.
 2016-12-10 21:47:07 +01:00
David Craven f63981de14
gnu: Add ghc-hinotify. 
* gnu/packages/haskell.scm (ghc-hinotify): New variable.
 2016-12-10 21:47:07 +01:00
Mark H Weaver 56c394ee43
gnu: icecat: Add more fixes from upstream mozilla-esr45. 
* gnu/packages/gnuzilla.scm (icecat)[sources]: Add more fixes from the
upstream mozilla-esr45 repository.
 2016-12-10 15:22:38 -05:00
Efraim Flashner 67c539e21f
gnu: Remove unused patch. 
* gnu/packages/patches/openjpeg-CVE-2015-6581.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-12-10 21:59:56 +02:00
Efraim Flashner a304b6c362
gnu: openjpeg: Add fixes for CVE-2016-{9850,9851}. 
* gnu/packages/image.scm (openjpeg)[replacement]: New field.
(openjpeg/fixed): New variable, patch against CVE-2016-9850,
CVE-2016-9851.
* gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-12-10 21:46:45 +02:00
Efraim Flashner 70c1d5ed05
gnu: ffmpeg@2.8: Update to 2.8.9. 
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.9.
 2016-12-10 21:00:23 +02:00
Efraim Flashner a6cd85742d
gnu: jasper: Update to 2.0.6. 
* gnu/packages/image.scm (jasper): Update to 2.0.6.
 2016-12-10 20:59:19 +02:00
Christopher Baines a77f036084
gnu: password-store: Don't run tests in parallel. 
* gnu/packages/password-utils.scm (password-store): Don't run tests in
  parallel, as it causes them to hang and the build to timeout.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-10 14:07:32 +01:00
Christopher Baines 619f98fa8f
gnu: password-store: Delete build phase 
* gnu/packages/password-utils.scm (password-store): Remove the build
  phase, as it is unused.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-10 14:04:18 +01:00
Marius Bakke fc184fe2de
gnu: openssl-next: Update to 1.1.0c [fixes CVE-{7053,7054,7055}]. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0c.
[arguments]: Duplicate 'configure' to add rpath flag previously handled by
now-defunct 'patch-runpath' phase. Duplicate 'remove-miscellany' phase.
 2016-12-10 14:00:05 +01:00
Kei Kebreau fdb552bbd4
gnu: windowmaker: Fix invocation of 'wmsetbg'. 
* gnu/packages/gnustep.scm (windowmaker)[arguments]: Add substitution of
40-character limit with a 107-character limit.
 2016-12-09 22:10:06 -05:00
Ben Woodcroft a225db5293
gnu: vsearch: Update to 2.3.4. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.4.
 2016-12-10 10:45:13 +10:00
Ben Woodcroft 7922ab8fe8
gnu: pardre: Update to 1.1.5-1. 
* gnu/packages/bioinformatics.scm (pardre): update to 1.1.5-1.
[source]: Update source hash.
 2016-12-10 10:45:12 +10:00
Mark H Weaver 6b2921c3ac
gnu: linux-libre: Add fixes for CVE-2016-8655 et al. 
* gnu/packages/linux.scm (linux-libre, linux-libre-arm-generic):
Add patches for CVE-2016-8655 and the vulnerability described in
<http://seclists.org/oss-sec/2016/q4/644>.
 2016-12-09 18:36:21 -05:00
Mark H Weaver 1134e99d86
gnu: linux-libre@4.4: Add fixes for CVE-2016-8655 et al. 
* gnu/packages/linux.scm (linux-libre-4.4): Add patches for CVE-2016-8655 and
the vulnerability described in <http://seclists.org/oss-sec/2016/q4/644>.
 2016-12-09 18:36:03 -05:00
Ludovic Courtès 72c0b68780
gnu: libsoup: Update to 2.56.0. 
* gnu/packages/gnome.scm (libsoup): Update to 2.56.0.
 2016-12-10 00:10:30 +01:00
Ben Woodcroft fdf3a68d9e
gnu: ruby-sdoc: Update to 0.4.2. 
* gnu/packages/ruby.scm (ruby-sdoc): Update to 0.4.2.
[arguments]: Remove 'relax-minitest-requirement' phase, Add 'set-rubylib'
phase.
[native-inputs]: Add ruby-hoe.
 2016-12-10 07:51:47 +10:00
Ben Woodcroft 71596c3ce6
gnu: Adjust gemspec modifications for ruby-2.3.2. 
* gnu/packages/ruby.scm (ruby-mocha)[arguments]: Adjust 'substitute*' of
gemspec.
(ruby-domain-name)[arguments]: Likewise.
 2016-12-10 07:50:16 +10:00
Mark H Weaver 750778abd4
gnu: linux-libre: Update to 4.8.13. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.13.
 2016-12-09 15:13:22 -05:00
Mark H Weaver 33d6a2ff9f
gnu: linux-libre@4.4: Update to 4.4.37. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.37.
 2016-12-09 15:10:17 -05:00
Paul Garlick f81c6a4932
gnu: gmsh: Update to 2.15.0. 
* gnu/packages/maths.scm (gmsh): Update to 2.15.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-09 19:14:21 +01:00
Marius Bakke dfdc92259b
gnu: libev: Update to 4.23. 
* gnu/packages/libevent.scm (libev): Update to 4.23.
 2016-12-09 18:23:05 +01:00
Ludovic Courtès f80b4d2ce0
Merge remote-tracking branch 'origin/master' into staging 2016-12-09 18:11:14 +01:00
Ludovic Courtès 13b5f44b47
gnu: libepoxy: Add patch to avoid segfault when GL support is missing. 
* gnu/packages/patches/libepoxy-gl-null-checks.patch: New file.
* gnu/packages/gl.scm (libepoxy)[source]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-12-09 18:09:43 +01:00
Ludovic Courtès d99ee3d923
gnu: ruby-sdoc: Really relax minitest version requirement. 
* gnu/packages/ruby.scm (ruby-sdoc)[arguments]: Adjust pattern in
'relax-minitest-requirement'.
 2016-12-09 15:39:13 +01:00
Hartmut Goebel 43e8824d3c
gnu: python-pyqt: Fix build by explicitly setting the stubsdir. 
* gnu/packages.qt.scm (python-pyqt, python2-pyqt)[arguments]: In phase
'configure' pass option --stubsdir.
 2016-12-09 13:04:17 +01:00
Hartmut Goebel 931eaeaad9
gnu: python-pyqt-5.5: Use non-inherited "configure" phase. 
This allows passing different options for 5.5 than for the main version
(which is currently 5.6).

* gnu/packages.qt.scm (python-pyqt-5.5, python2-pyqt-5.5)[arguments]: Copy
from (python-pyqt)[arguments].
 2016-12-09 13:04:17 +01:00