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46008 Commits (7af60255ba318cea7bdc38bf1b3ac4fbee3bef92)

Author SHA1 Message Date
Ludovic Courtès 06172df545
gnu: flex: Build bison-for-tests sequentially. 
This is a followup to b1593c1c4f.

* gnu/packages/flex.scm (flex)[inputs](bison-for-tests): Use
'substitute-keyword-arguments' instead of overriding them altogether.
This ensures that #:parallel-build? and #:parallel-tests? are
preserved.
 2019-06-29 22:34:20 +02:00
Efraim Flashner bdb51ed6d1
gnu: stow: Update license information. 
* gnu/packages/package-management.scm (stow)[license]: Update to gpl3+.
 2019-06-29 21:18:50 +03:00
Tobias Geerinckx-Rice 87a90486ca
download: Remove hydra from content-addressed URL list 
* guix/build/download-nar.scm (urls-for-item): Remove
mirror.hydra.gnu.org.
* guix/download.scm (%content-addressed-mirrors): Likewise.
 2019-06-29 14:31:23 +02:00
Tobias Geerinckx-Rice 3a8bfebed9
etc: Remove hydra.gnu.org.pub key. 
* etc/substitutes/hydra.gnu.org.pub: Delete file.
* guix/self.scm (miscellaneous-files): Don't install it.
* Makefile.am (dist_pkgdata_DATA): Remove it.
* gnu/services/base.scm (%default-authorized-guix-keys): Likewise.
(hydra-key-authorization): Rename to…
(substitute-key-authorization): …this.  Adjust only call site.
 2019-06-29 14:27:22 +02:00
Tobias Geerinckx-Rice 70d6ec3e4f
doc: Correct the software behind ci.guix.gnu.org. 
* doc/guix.texi (Invoking guix publish): It runs Cuirass.
 2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice 44b5f28a77
doc: Remove references to hydra.gnu.org. 
* doc/contributing.texi (Packaging Guidelines, Submitting Patches):
Replace hydra URL with @value{SUBSTITUTE-SERVER}.
* doc/guix.texi (Official Substitute Server): Remove ‘hydra’ @cindex.
(Substitute Server Authorization): Remove note about hydra.gnu.org.pub.
 2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice 414c4de15d
guix-install.sh: Don't authorise hydra.gnu.org. 
* etc/guix-install.sh (sys_authorize_build_farms): Authorise only
ci.guix.gnu.org and make all references to it singular.
 2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice a3efe269b5
gnu: flashrom: Update to 1.1. 
* gnu/packages/flashing-tools.scm (flashrom): Update to 1.1.
 2019-06-29 06:28:50 +02:00
Tobias Geerinckx-Rice ad9baf38ce
gnu: di: Update to 4.47.1. 
* gnu/packages/admin.scm (di): Update to 4.47.1.
 2019-06-29 06:28:50 +02:00
Eric Bavier 30833b1397
gnu: stow: Update to 2.3.0. 
* gnu/packages/package-management.scm (stow): Update to 2.3.0.
[propagated-inputs]: New field.
 2019-06-28 22:49:21 -05:00
Eric Bavier d1555f34c0
gnu: Add Perl Clone::Choose. 
* gnu/packages/perl.scm (perl-clone-choose): New variable.
 2019-06-28 22:44:59 -05:00
Ivan Petkov f5de2b9a3e
gnu: rust: use llvm@8 
* gnu/packages/llvm.scm (llvm): Rename to...
(llvm-8): ...this.
(llvm): New variable.
* gnu/packages/rust.scm (rust)[inputs]: Use llvm-8
 2019-06-28 18:31:51 -07:00
Ivan Petkov f676b2a45f
gnu: rust: downgrade older versions to llvm@6 
* gnu/packages/rust.scm: (rust-1.30): Remove llvm override.
 2019-06-28 18:31:51 -07:00
Ivan Petkov f309420b2d
gnu: rust: remove debug-info patch thanks to newer gdb version 
* gnu/local.mk: (dist_patch_DATA): Delete
%D%/packages/patches/rust-1.30-gdb-llvm.patch
* gnu/packages/rust.scm: (rust-1.30): Delete patch overrides.
(rust-1.31): Delete patch overrides.
 2019-06-28 18:31:47 -07:00
Ricardo Wurmus 3d0c9ff83e
gnu: r-quantreg: Update to 5.41. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.41.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 73a29d39b3
gnu: r-fpc: Update to 2.2-3. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-3.
[propagated-inputs]: Remove r-mvtnorm.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 666a5a649c
gnu: r-mclust: Update to 5.4.4. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.4.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus fad641716e
gnu: r-mvtnorm: Update to 1.0-11. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-11.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 30f7acdb6b
gnu: r-segmented: Update to 1.0-0. 
* gnu/packages/statistics.scm (r-segmented): Update to 1.0-0.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 5eddf1e291
gnu: r-plotrix: Update to 3.7-6. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-6.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 0b17f1d1dd
gnu: r-dbplyr: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.2.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus ef558bcfc5
gnu: r-rlang: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.0.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 45ad3fa9e1
gnu: r-gdtools: Update to 0.1.9. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.9.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus 2c4b38002e
gnu: r-cluster: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus d42fb7d293
gnu: r-future-apply: Update to 1.3.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.3.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 36ff60f539
gnu: r-bootstrap: Update to 2019.6. 
* gnu/packages/cran.scm (r-bootstrap): Update to 2019.6.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 93e72161ae
gnu: r-rnifti: Update to 0.11.0. 
* gnu/packages/cran.scm (r-rnifti): Update to 0.11.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 9f84c9e843
gnu: r-rgl: Update to 0.100.24. 
* gnu/packages/cran.scm (r-rgl): Update to 0.100.24.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus da4754a3b1
gnu: r-remotes: Update to 2.1.0. 
* gnu/packages/cran.scm (r-remotes): Update to 2.1.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus a634a76a06
gnu: r-bayestestr: Update to 0.2.2. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.2.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 992e03d209
gnu: r-emmeans: Update to 1.3.5.1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.1.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 56ab7acb96
gnu: r-ggstance: Update to 0.3.2. 
* gnu/packages/cran.scm (r-ggstance): Update to 0.3.2.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus c46a16407b
gnu: r-flextable: Update to 0.5.5. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.5.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 36c5f86fab
gnu: r-sjmisc: Update to 2.8.1. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.1.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus c3447a92ee
gnu: r-prediction: Update to 0.3.14. 
* gnu/packages/cran.scm (r-prediction): Update to 0.3.14.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 0d2e266220
gnu: r-officer: Update to 0.3.5. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.5.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus 0ccb34584c
gnu: r-ggpubr: Update to 0.2.1. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.1.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus a4bc73b236
gnu: r-ellipsis: Update to 0.2.0. 
* gnu/packages/cran.scm (r-ellipsis): Update to 0.2.0.
[propagated-inputs]: Add r-rlang.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus dacf52e0a3
gnu: r-cgdsr: Update to 1.3.0. 
* gnu/packages/cran.scm (r-cgdsr): Update to 1.3.0.
[propagated-inputs]: Add r-httr.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 22b2d8b97f
gnu: r-quantmod: Update to 0.4-15. 
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-15.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus f5ec882390
gnu: r-tinytex: Update to 0.14. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.14.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus db794146ac
gnu: r-xfun: Update to 0.8. 
* gnu/packages/cran.scm (r-xfun): Update to 0.8.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 1f7e8d49c3
gnu: r-performanceanalytics: Update to 1.5.3. 
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.3.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 4ae5f18a25
gnu: r-abbyyr: Update to 0.5.5. 
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.5.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 5b86bcfa68
gnu: r-phangorn: Update to 2.5.5. 
* gnu/packages/bioinformatics.scm (r-phangorn): Update to 2.5.5.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 7f17e60ab7
gnu: r-tximport: Update to 1.12.3. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.3.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus dafd290d21
gnu: r-genomicfeatures: Update to 1.36.3. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.3.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus c40bba2b36
gnu: r-genomicalignments: Update to 1.20.1. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.20.1.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus 888085c36c
gnu: r-biomart: Update to 2.40.1. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.1.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus f0c244229a
gnu: r-edger: Update to 3.26.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.5.
 2019-06-29 01:34:43 +02:00