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47770 Commits

Author SHA1 Message Date
Ricardo Wurmus 01c7ba9982
gnu: Add r-oligoclasses. 
* gnu/packages/bioconductor.scm (r-oligoclasses): New variable.
 2019-09-15 20:58:26 +02:00
Ricardo Wurmus 15184fb386
gnu: Add r-reportingtools. 
* gnu/packages/bioconductor.scm (r-reportingtools): New variable.
 2019-09-15 20:58:25 +02:00
Ricardo Wurmus 83b4209122
gnu: Add r-pfam-db. 
* gnu/packages/bioconductor.scm (r-pfam-db): New variable.
 2019-09-15 20:57:26 +02:00
Ricardo Wurmus 4ca2d6c1a6
gnu: Add r-affycontam. 
* gnu/packages/bioconductor.scm (r-affycontam): New variable.
 2019-09-15 20:53:27 +02:00
Ricardo Wurmus 5094aa9472
gnu: Add r-affycompatible. 
* gnu/packages/bioconductor.scm (r-affycompatible): New variable.
 2019-09-15 20:53:21 +02:00
Ricardo Wurmus 5cf940de21
gnu: Add r-affycomp. 
* gnu/packages/bioconductor.scm (r-affycomp): New variable.
 2019-09-15 20:53:14 +02:00
Ricardo Wurmus 53b1e10f23
gnu: Add r-affydata. 
* gnu/packages/bioconductor.scm (r-affydata): New variable.
 2019-09-15 20:53:01 +02:00
Ricardo Wurmus 853211a51b
gnu: Add r-timeseriesexperiment. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
 2019-09-15 20:42:41 +02:00
Ricardo Wurmus 739b2d10f0
gnu: Add r-wavcluster. 
* gnu/packages/bioconductor.scm (r-wavcluster): New variable.
 2019-09-15 20:41:01 +02:00
Ricardo Wurmus d77e69e9e1
gnu: r-spam: Update to 2.3-0. 
* gnu/packages/cran.scm (r-spam): Update to 2.3-0.
 2019-09-15 16:15:37 +02:00
Ricardo Wurmus e48e476f41
gnu: r-feather: Update to 0.3.5. 
* gnu/packages/cran.scm (r-feather): Update to 0.3.5.
 2019-09-15 16:15:37 +02:00
Giacomo Leidi 21fc601295
gnu: emacs-zerodark-theme: Update to 4.6. 
* gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6.
[source]: Update to new source uri.
 2019-09-15 15:29:18 +03:00
Ricardo Wurmus 991c44109f
gnu: Add yubico-pam. 
* gnu/packages/authentication.scm (yubico-pam): New variable.
 2019-09-15 09:28:24 +02:00
Ricardo Wurmus 9eac315069
gnu: r-delayedmatrixstats: Update to 1.6.1. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1.
 2019-09-14 23:39:39 +02:00
Ricardo Wurmus 82e343d14a
gnu: r-rhdf5lib: Update to 1.6.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1.
 2019-09-14 23:39:25 +02:00
Ricardo Wurmus cd25e29616
gnu: r-rtracklayer: Update to 1.44.4. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4.
 2019-09-14 23:39:20 +02:00
Ricardo Wurmus 146f0ba5d1
gnu: r-genomicranges: Update to 1.36.1. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1.
 2019-09-14 23:39:12 +02:00
Ricardo Wurmus 7f518ef70b
gnu: r-s4vectors: Update to 0.22.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1.
 2019-09-14 23:39:08 +02:00
Ricardo Wurmus 11f973e093
gnu: r-mixomics: Update to 6.8.4. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4.
 2019-09-14 23:39:03 +02:00
Ricardo Wurmus f8fb5b75c9
gnu: r-gtrellis: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1.
 2019-09-14 23:38:58 +02:00
Ricardo Wurmus ec0270b1e9
gnu: r-regioner: Update to 1.16.4. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4.
 2019-09-14 23:38:51 +02:00
Björn Höfling cd75c487c8
gnu: Add emacs-elixir-mode. 
* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable.
 2019-09-14 19:44:40 +02:00
Rutger Helling fda8ed0eb1
gnu: wine-staging: Update to 4.16. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.16.
* gnu/packages/wine.scm (wine-staging): Update to 4.16.
 2019-09-14 13:01:28 +02:00
Ricardo Wurmus 6e377b8893
import/utils: beautify-description: Recognize more fragments. 
* guix/import/utils.scm (beautify-description): Handle additional common
initial sentence fragments in descriptions.
 2019-09-14 00:37:47 +02:00
Ricardo Wurmus 981dcc3b0c
gnu: r-tidyr: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.0.0.
[propagated-inputs]: Add r-ellipsis, r-lifecycle, and r-vctrs.
 2019-09-14 00:37:47 +02:00
Ricardo Wurmus 17f3960f28
gnu: r-diffusionmap: Update to 1.2.0. 
* gnu/packages/graph.scm (r-diffusionmap): Update to 1.2.0.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus fd399b7a83
gnu: r-seqinr: Update to 3.6-1. 
* gnu/packages/cran.scm (r-seqinr): Update to 3.6-1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus f5b1354fdb
gnu: Add r-lifecycle. 
* gnu/packages/cran.scm (r-lifecycle): New variable.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus cd3ba9c8c7
gnu: r-huge: Update to 1.3.3. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.3.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus ac50956f31
gnu: r-tidytree: Update to 0.2.7. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.7.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus aef5e2aadd
gnu: r-activity: Update to 1.3. 
* gnu/packages/cran.scm (r-activity): Update to 1.3.
[propagated-inputs]: Add r-insol.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus d72da21d54
gnu: r-sjplot: Update to 2.7.1. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.7.1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 664e15ed8f
gnu: r-sjstats: Update to 0.17.6. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.6.
[propagated-inputs]: Add r-parameters.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 28110e6842
gnu: r-emmeans: Update to 1.4.1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 3ab3f7f3bb
gnu: r-sjlabelled: Update to 1.1.1. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 4557f44755
gnu: r-circlize: Update to 0.4.8. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.8.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus a1f4399438
gnu: r-httpuv: Update to 1.5.2. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.2.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 5ad9da9ab3
gnu: Add r-insol. 
* gnu/packages/cran.scm (r-insol): New variable.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus a0244ef000
gnu: Add r-rgdal. 
* gnu/packages/cran.scm (r-rgdal): New variable.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus a5a79dd0b8
gnu: Add r-parameters. 
* gnu/packages/cran.scm (r-parameters): New variable.
 2019-09-14 00:37:45 +02:00
Efraim Flashner 18a613fb29
gnu: gnujump: Add desktop file. 
This fixes bug#37069.

* gnu/packages/games.scm (gnujump)[arguments]: Add custom
'create-desktop-entry phase to install a desktop file.
 2019-09-13 17:07:16 +03:00
Efraim Flashner dbb0b06eb4
gnu: tipp10: Fix path in desktop entry. 
* gnu/packages/patches/tipp10-fix-compiling.patch: Remove changes to
hardcode executable path.
 2019-09-13 17:07:13 +03:00
Paul Garlick 0746c33eff
gnu: gmsh: Update home page. 
This addresses a 'guix lint' warning.

* gnu/packages/maths.scm (gmsh)[home-page]: Update to avoid URL
redirection.
 2019-09-13 14:53:57 +01:00
Efraim Flashner f61f424d5b
gnu: mcron: Update to 1.1.2. 
* gnu/packages/guile-xyz.scm (mcron): Update to 1.1.2.
[arguments]: Remove custom 'set-timezone phase.
[native-inputs]: Add autoconf, automake, help2man, texinfo.
[inputs]: Remove ed, which.
 2019-09-13 16:02:31 +03:00
Efraim Flashner f0e149752a
gnu: shellutils.scm: Sort module inputs. 
* gnu/packages/shellutils.scm: Sort module inputs alphabetically.
 2019-09-13 15:39:43 +03:00
Collin J. Doering 8ebd56ea75
gnu: Add zsh-autosuggestions. 
* gnu/packages/shellutils.scm (zsh-autosuggestions): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-09-13 15:39:34 +03:00
Collin J. Doering 9c4cb1ef4c
gnu: Add ruby-rspec-wait. 
* gnu/packages/ruby.scm (ruby-rspec-wait): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-09-13 15:39:28 +03:00
Efraim Flashner 3af85f832d
build-system/cargo: Remove unused function. 
* guix/build/cargo-build-system.scm (touch): Remove it.
 2019-09-13 15:20:27 +03:00
Efraim Flashner 43ffa11fdc
build-system/cargo: Use 'strip-store-file-name'. 
This is a follow-up to f58b2f38e4.

* guix/build/cargo-build-system.scm (configure): Use bespoke
'strip-store-file-name' function.
 2019-09-13 15:20:16 +03:00
Collin J. Doering f69f37d54a
gnu: Add sh-z shell tool 
* gnu/packages/shellutils.scm (sh-z): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-13 10:50:11 +02:00