1d0263b44e
gnu: r-rhtslib: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.10.0.
2017-11-07 08:15:29 +01:00
c25154e5cb
gnu: r-rbgl: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.54.0.
2017-11-07 08:15:29 +01:00
727706ad38
gnu: r-annotationforge: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.20.0.
2017-11-07 08:15:29 +01:00
3fd010ff30
gnu: r-dexseq: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.0.
2017-11-07 08:15:28 +01:00
0166dc07ef
gnu: r-deseq2: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.0.
2017-11-07 08:15:28 +01:00
554fac74aa
gnu: r-genefilter: Update to 1.60.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.60.0.
2017-11-07 08:15:28 +01:00
cb4d3ff2c4
gnu: r-geneplotter: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.56.0.
2017-11-07 08:15:28 +01:00
2d4e887dc0
gnu: r-annotate: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.0.
2017-11-07 08:15:28 +01:00
94fd86e5e1
gnu: r-dnacopy: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.52.0.
2017-11-07 08:15:27 +01:00
c7782c3f1f
gnu: r-biocviews: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.46.0.
[propagated-inputs]: Remove r-knitr.
2017-11-07 08:15:27 +01:00
7373b4167a
gnu: r-bioccheck: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.14.0.
[native-inputs]: Remove which.
[propagated-inputs]: Add r-stringdist.
2017-11-07 08:15:27 +01:00
a40a04fdbb
gnu: Add r-stringdist.
...
* gnu/packages/cran.scm (r-stringdist): New variable.
2017-11-07 08:15:27 +01:00
8ca2b2b06e
gnu: r-rgraphviz: Update to 2.22.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.22.0.
2017-11-07 08:15:27 +01:00
a0e4b41b40
gnu: guile-git: Update snapshot.
...
* gnu/packages/guile.scm (guile-git): Update to commit 951a32c.
2017-11-07 00:12:11 +01:00
fedde43b6d
gnu: moka-icon-theme: Fix license.
...
* gnu/packages/gnome.scm (moka-icon-theme): Add cc-by-sa4.0 to license field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
550281fb5f
gnu: moka-icon-theme: Add faba-icon-theme as propagated input.
...
* gnu/packages/gnome.scm (moka-icon-theme)[propagated-inputs]: New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
8b0e4177ee
gnu: moka-icon-theme: Simplify package definition.
...
* gnu/packages/gnome.scm (moka-icon-theme): Inherit faba-icon-theme to avoid
duplicating similar package definition.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
d935e6a12c
gnu: Add faba-icon-theme.
...
* gnu/packages/gnome.scm (faba-icon-theme): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
47bd32d98e
gnu: electrum: Update to 3.0.
...
gnu/packages/finance.scm (electrum): Update to 3.0.
[inputs]: Change to python3 inputs.
[arguments]: Remove python-2. Disable tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:10 +01:00
ea0421bbf6
gnu: Add python-jsonrpclib-pelix.
...
* gnu/packages/python.scm (python-jsonrpclib-pelix, python2-jsonrpclib-pelix):
New variables.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:10 +01:00
96dc8f3527
packages: 'fold-packages' takes #:select? parameter.
...
* gnu/packages.scm (fold-packages): Add #:select? parameter and honor it.
2017-11-07 00:12:10 +01:00
0ad5f80982
Fix ambiguous imports.
...
* gnu/packages/ocaml.scm: Hide 'zip' from (srfi srfi-1).
* guix/git.scm: Select 'mkdir-p' from (guix build utils).
2017-11-07 00:12:10 +01:00
913027f383
gnu: nnn: Update to 1.5.
...
* gnu/packages/admin.scm (nnn): Update to 1.5.
2017-11-06 23:07:19 +02:00
6a534909fa
gnu: libuninameslist: Update to 20170807.
...
* gnu/packages/fontutils.scm (libuninameslist): Update to 20170807.
2017-11-06 23:07:13 +02:00
10b159a303
gnu: u-boot: Only install 'MLO' output if it exists.
...
* gnu/packages/bootloaders.scm (u-boot)[arguments]: Add 'MLO' to
uboot-files only if it has been built.
2017-11-06 22:54:28 +02:00
b1a3079347
system: vm: Use 2^32 - 1 as hash size.
...
* gnu/system/vm.scm (operating-system-uuid): Use 2^32 - 1 instead of
2^32 as hash size.
On some 32 bit system (ARM for example), 2^32 exceeds hash max
size (ULONG_MAX = 2^32 - 1).
2017-11-06 20:02:25 +01:00
dd208b936c
bootloaders: uboot: Add .img and MLO files to binary outputs.
...
* gnu/packages/bootloaders.scm (make-u-boot-package): Add .img and MLO files
as binary output.
2017-11-06 19:58:21 +01:00
f6948189a9
linux: Add omap2plus generic kernel.
...
* gnu/packages/linux.scm (linux-libre-arm-omap2plus): New exported variable.
2017-11-06 19:55:10 +01:00
2ac42fe51f
gnu: uboot: Fix same-arch? check.
...
* gnu/packages/bootloaders.scm (make-u-boot-package): Compare %current-system
to system associated to given triplet. Comparing a system and a triplet
didn't make sense.
2017-11-06 19:53:13 +01:00
d298e7652a
gnu: perl-test-www-mechanize-psgi: Update source uri.
...
* gnu/packages/web.scm (perl-test-www-mechanize-psgi)[source]: Update to
new source uri.
2017-11-06 20:39:45 +02:00
12c613b548
gnu: dtc: Build python bindings.
...
* gnu/packages/bootloaders.scm (dtc)[native-inputs]: Add swig.
[inputs]: Add python-2.
[arguments]: Remove 'NO_PYTHON' from make-flags, add 'SETUP_PREFIX' to
set python bindings prefix.
2017-11-06 20:39:45 +02:00
ab8757c5b1
gnu: dtc: Update to 1.4.5.
...
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.5.
[arguments]: Add NO_PYTHON flag to make-flags.
2017-11-06 20:39:45 +02:00
9371600ec8
gnu: libxres: Update to 1.2.0.
...
* gnu/packages/xorg.scm (libxres): Update to 1.2.0.
2017-11-06 20:02:45 +02:00
fd592a12e2
gnu: youtube-dl: Update to 2017.11.06.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.11.06.
2017-11-06 18:18:41 +01:00
8f4e3b95df
gnu: aria2: Update to 1.33.0.
...
* gnu/packages/bittorrent.scm (aria2): Update to 1.33.0.
2017-11-06 06:18:31 +02:00
08e1f38ddd
gnu: emacs-undo-tree: Parameterize source uri.
...
* gnu/packages/emacs.scm (emacs-undo-tree)[source]: Replace hard-coded
version with version parameter.
2017-11-06 06:18:26 +02:00
73cd4022d6
gnu: borg: Update to 1.1.2.
...
* gnu/packages/backup.scm (borg): Update to 1.1.2.
[arguments]: Disable another test in the 'check' phase.
2017-11-05 20:36:05 -05:00
d8799bd0df
gnu: netsurf: Update to 3.7.
...
For compatibility, dependents must be updated at the same time.
* gnu/packages/web.scm (libcss): Update to 0.7.0
(nsgenbind): Update to 0.5.
(netsurf): Update to 3.7.
[arguments]: Fix binary name in .desktop. Adjust "docs" directory name.
* gnu/packages/patches/netsurf-system-utf8proc.patch: Adjust to new source.
2017-11-05 07:46:08 -06:00
772588bd22
gnu: libnspsl: Update to 0.1.2.
...
* gnu/packages/web.scm (libnspsl): Update to 0.1.2.
2017-11-05 07:46:08 -06:00
f379c52f27
gnu: libnsgif: Update to 0.2.0.
...
* gnu/packages/web.scm (libnsgif): Update to 0.2.0.
2017-11-05 07:46:08 -06:00
b20d97f848
gnu: libsvgtiny: Update to 0.1.6.
...
* gnu/packages/web.scm (libsvgtiny): Update to 0.1.6.
2017-11-05 07:46:08 -06:00
036f47a37e
gnu: libdom: Update to 0.3.2.
...
* gnu/packages/web.scm (libdom): Update to 0.3.2.
2017-11-05 07:46:08 -06:00
e33f6efd60
gnu: libwapcaplet: Update to 0.4.0.
...
* gnu/packages/web.scm (libwapcaplet): Update to 0.4.0.
2017-11-05 07:46:08 -06:00
84dec7a0c0
gnu: hubbub: Update to 0.3.4.
...
* gnu/packages/web.scm (hubbub): Update to 0.3.4.
2017-11-05 07:46:07 -06:00
bf56082605
gnu: netsurf-buildsystem: Update to 1.6.
...
* gnu/packages/web.scm (netsurf-buildsystem): Update to 1.6.
2017-11-05 07:46:00 -06:00
511d8a02e8
gnu: emacs-evil: Update to 1.2.13.
...
* gnu/packages/emacs.scm (emacs-evil): Update to 1.2.13.
(source): Adjust URL to new upstream location on github.
(home-page): likewise.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:47 +01:00
db574f7183
gnu: emacs-slime: Use correct Texinfo commands in the description.
...
Previously the description had "@{something}" in it which is never
valid Texinfo. This commit changes it to use "@command{something}"
to render the full description.
* gnu/packages/emacs.scm (emacs-slime)[description]: Correct Texinfo usage.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:33 +01:00
77a7891b87
gnu: emacs-undo-tree: Update to 0.6.6.
...
* gnu/packages/emacs (emacs-undo-tree): Update to 0.6.6.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:20 +01:00
5fa1b4174a
gnu: emacs-which-key: Update to 3.0.2.
...
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.0.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:22:31 +01:00
9505877205
gnu: emacs-neotree: Update to 0.5.2.
...
* gnu/packages/emacs.scm (emacs-neotree): Update to 0.5.2.
[source](uri): Adjust URL to tag change.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:22:14 +01:00
aa70cf8c36
gnu: redis: Update to 4.0.2.
...
* gnu/packages/databases.scm (redis): Update to 4.0.2.
2017-11-05 19:03:32 +01:00
39f2433c39
gnu: sdl2: Update to 2.0.7 and enable Wayland backend.
...
* gnu/packages/sdl.scm (sdl2): Update to 2.0.7.
[inputs]: Add wayland, wayland-protocols, libxkbcommon.
[arguments]: Add '--disable-wayland-shared' to #:configure-flags.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 18:14:19 +01:00
7c5cc40097
gnu: add disorderfs.
...
* gnu/packages/file-systems.scm (disorderfs): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:50:48 +01:00
e55c46b850
gnu: python-decorator: Update to 4.1.2.
...
* gnu/packages/python.scm (python-decorator): Update to 4.1.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:27:42 +01:00
743d3f6502
gnu: calibre: Install mimetypes.
...
* gnu/packages/ebook.scm (calibre)[arguments]: Install mimetypes xml file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
9132212fb8
gnu: calibre: Add optipng as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add optipng.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
bf4a40db3c
gnu: calibre: Add python2-dukpy as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-dukpy. dukpy was
unbundled from Calibre, so we need to to use the Guix version.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
2e15906c1c
gnu: Add python-dukpy, python2-dukpy.
...
gnu/packages/python.scm (python-dukpy, python2-dukpy): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
7ed93a6c9e
gnu: calibre: Update to 3.11.1.
...
* gnu/packages/ebook.scm (calibre): Update to 3.11.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
540dd1c8cc
gnu: retroarch: Enable Wayland support.
...
* gnu/packages/games.scm (retroarch)[inputs]: Add wayland.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
ca1ddce8a3
gnu: weston: Update to 3.0.0.
...
* gnu/packages/freedesktop.scm (weston): Update to 3.0.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
8d2bde86ec
gnu: lollypop: Update to 0.9.304.
...
* gnu/packages/gnome.scm (lollypop): Update to 0.9.304.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
08d61397cd
gnu: gnome-terminal: Update to 3.26.2.
...
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.26.2.
2017-11-05 16:44:51 +01:00
68488f275d
gnu: vte: Update to 0.50.2.
...
* gnu/packages/gnome.scm (vte): Update to 0.50.2.
2017-11-05 16:44:50 +01:00
7561be8699
gnu: fio: Update to 3.2.
...
* gnu/packages/benchmark.scm (fio): Update to 3.2.
2017-11-05 16:16:51 +01:00
3c41b9929b
gnu: feh: Update to 2.22.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.22.
[native-search-paths]: New field.
2017-11-05 16:08:02 +01:00
21b71b01e9
services: Add 'description' fields.
...
* gnu/services/admin.scm (rottlog-service-type)
(tailon-service-type): Add 'description' field.
* gnu/services/audio.scm (mpd-service-type): Likewise.
* gnu/services/avahi.scm (avahi-service-type): Likewise.
* gnu/services/ssh.scm (lsh-service-type)
(openssh-service-type, dropbear-service-type): Likewise.
2017-11-05 15:29:52 +01:00
b6d2930d1f
services: Add murmur.
...
* gnu/services/telephony.scm: New file.
* gnu/local.mk: Add it.
* doc/guix.texi (Telephony Services): New node.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-05 15:21:53 +01:00
50c229caf9
gnu: fio: Update to 3.1.
...
* gnu/packages/benchmark.scm (fio): Update to 3.1.
2017-11-05 12:29:46 +02:00
1289001a5d
gnu: prison: Move to be in alphabetical order.
...
I was trapped be the definitions not being in alphabetical order.
* gnu/packages/kde-frameworks.scm (prison): Move in front of
solid.
2017-11-05 10:56:40 +01:00
a7dc855725
gnu: kdewebkit: Move to be in alphabetical order.
...
I was trapped by the definitions not being in alphabetical order.
* gnu/packages/kde-frameworks.scm (kdewebkit): Move in front of
kemoticons.
2017-11-05 10:56:40 +01:00
39d1a429fe
gnu: kactivities: Move to tier 2.
...
KDE now lists this package as tier 2, I was trapped by the
definitions being at the wrong place.
* gnu/packages/kde-frameworks.scm (kactivities): Move into the
"section" of tier 2 packages. (kactivities-stats) Remove now
obsolete comment.
2017-11-05 10:56:39 +01:00
571f1fa3b2
gnu: libksysguard: Update to 5.11.2.
...
* gnu/packages/kde.scm (libksysguard): Update to 5.11.2.
2017-11-05 10:56:39 +01:00
e8737735a2
gnu: solid: Enable building interface for qml.
...
* gnu/package/kde-frameworks.scm(solid)[inputs]: Add qtdeclarative.
2017-11-05 10:56:38 +01:00
b1beb1670b
gnu: krunner: Make some tests pass.
...
* gnu/packages/kde-frameworks.scm[arguments]
<#:tests?>: Remove.
<#:phases>[fix-paths-for-test'] New phase.
<#:phases>[check-setup]: Set $HOME. Blacklist a failing new-in-5.39.0 test.
2017-11-05 10:56:37 +01:00
5bc1efd77d
gnu: kdelibs4support: Make test kstandarddirstest pass.
...
* gnu/package/kde-frameworks.scm(kdelibs4support)[#:phases]
<check-post-install>: Add workaround for bug in test-case.
Update comment.
2017-11-05 10:56:36 +01:00
fa274ab2c0
gnu: kimageformats: Update comment.
...
* gnu/packages/kde-frameworks.scm(kimageformats): Update comment.
2017-11-05 10:56:36 +01:00
6211aadf4b
gnu: kde-frameworks: Update to 5.39.0.
...
Beside simple updating:
- ktexteditor: Add input.
- kdelibs4support: Enable test kmimetypetest, disable test kuniqueapptest.
- kimageformats: Make the plugins available for tests.
- krunner: Make old tests pass again. Blacklist a failing new test.
* gnu/packages/kde-frameworks.scm (attica, baloo, bluez-qt, breeze-icons,
extra-cmake-modules, kactivities, kactivities-stats, kapidox, karchive,
kauth, kbookmarks, kcmutils, kcodecs, kcompletion, kconfig, kconfigwidgets,
kcoreaddons, kcrash, kdbusaddons, kdeclarative, kded,
kde-frameworkintegration, kdelibs4support, kdesignerplugin, kdesu,
kdewebkit, kdnssd, kdoctools, kemoticons, kfilemetadata, kglobalaccel,
kguiaddons, khtml, ki18n, kiconthemes, kidletime, kimageformats, kinit, kio,
kitemmodels, kitemviews, kjobwidgets, kjs, kjsembed, kmediaplayer,
knewstuff, knotifications, knotifyconfig, kpackage, kparts, kpeople,
kplotting, kpty, kross, krunner, kservice, ksyntaxhighlighting,
ktextwidgets, kunitconversion, kwallet, kwayland, kwidgetsaddons,
kwindowsystem, kxmlgui, kxmlrpcclient, modemmanager-qt, networkmanager-qt,
oxygen-icons, plasma-framework, prison, solid, sonnet, threadweaver): Update
to 5.39.0
(ktexteditor) Update to 5.39.0. [source]: Add patch. [inputs]: Add
qtdeclarative.
(kdelibs4support): Update to 5.39.0. [#:phase check-post-install]: Remove
kmimetypetest from and add kuniqueapptest to list of test to be excluded
when running ctest.
(kimageformats): Update to 5.39.0. [#:phase check-setup] Make the plugins
available for tests.
* gnu/packages/patches/ktexteditor-5.39.0-autotests-dependencies.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-11-05 10:56:35 +01:00
9f5bd38f94
gnu: extra-cmake-modules: Install pri-files into lib/qt5/.
...
This in accordance with the documentation in
ECMGeneratePriFile.cmake: "Packagers … want to set
`ECM_MKSPECS_INSTALL_DIR` to something like
`share/qt5/mkspecs/modules`." Our Qt5 is putting pri-files into
`lib/qt5/mkspecs/modules`.
* gnu/packages/kde-frameworks.scm(extra-cmake-modules)[#:phase fix-lib-path]:
New substitute for file 'modules/ECMGeneratePriFile.cmake'.
2017-11-05 10:56:34 +01:00
46dea1241c
gnu: icedtea: Update to 3.6.0 [security fixes].
...
Fixes CVE-2017-{10274,10821,10825,10295,10388,10346,10350,10347,10349,10345,
10348,10357,10355,10356,10165} and CVE-2016-{10165,9840,9841,9842,9843}.
* gnu/packages/java.scm (icedtea-8): Update to 3.6.0.
[native-inputs]: Update dependency hashes.
2017-11-04 15:33:59 +01:00
171ba2480f
gnu: diamond: Update to 0.9.12.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.12.
2017-11-04 10:51:44 +10:00
d3f140218b
gnu: sssd: Disable failing test.
...
* gnu/packages/sssd.scm (sssd)[arguments]<#:phases>: Add substitution to
'disable-failing-test' phase.
2017-11-04 00:07:40 +01:00
f1ae27b608
gnu: samba: Update to 4.7.1.
...
* gnu/packages/samba.scm (samba): Update to 4.7.1.
2017-11-04 00:07:40 +01:00
ad25310dd5
gnu: ldb: Update to 1.3.0.
...
* gnu/packages/samba.scm (ldb): Update to 1.3.0.
2017-11-04 00:07:40 +01:00
d94c679254
gnu: re2: Update to 2017-11-01.
...
* gnu/packages/regex.scm (re2): Update to 2017-11-01.
2017-11-04 00:07:39 +01:00
1695bd788d
gnu: libxfont@1: Update to 1.5.3.
...
* gnu/packages/xorg.scm (libxfont): Update to 1.5.3.
[source](patches): Remove.
2017-11-04 00:07:39 +01:00
66865ab8ac
gnu: multiqc: Update to 1.3.
...
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.3.
[propagated-inputs]: Add python-enum34.
[license]: The license was changed to "GPLv3 or later" with this release.
2017-11-03 17:18:52 +01:00
416ad6feaa
gnu: iso-codes: Update to 3.76.
...
* gnu/packages/iso-codes.scm (iso-codes): Update to 3.76.
2017-11-03 09:34:13 -04:00
b12c6a664d
gnu: r-ape: Update to 5.0.
...
* gnu/packages/bioinformatics.scm (r-ape): Update to 5.0.
[propagated-inputs]: Add r-rcpp.
2017-11-03 14:14:38 +01:00
840782204f
gnu: r-bbmle: Update to 1.0.20.
...
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.20.
2017-11-03 14:14:38 +01:00
1a1b4f0571
gnu: r-proxy: Update to 0.4-19.
...
* gnu/packages/cran.scm (r-proxy): Update to 0.4-19.
2017-11-03 14:14:38 +01:00
a8a2871f71
gnu: r-glue: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-glue): Update to 1.2.0.
2017-11-03 14:14:38 +01:00
a6ec5b7043
gnu: r-withr: Update to 2.1.0.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
2017-11-03 14:14:37 +01:00
fd9afcf4ea
gnu: r-quantreg: Update to 5.34.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
2017-11-03 14:14:37 +01:00
1fe75660c0
gnu: r-robustbase: Update to 0.92-8.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
2017-11-03 14:14:37 +01:00
1fb415cb50
gnu: r-purrr: Update to 0.2.4.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
2017-11-03 14:14:37 +01:00
c8818f5577
gnu: r-irlba: Update to 2.3.1.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
2017-11-03 14:14:37 +01:00
116e9837b5
gnu: r-checkmate: Update to 1.8.5.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
2017-11-03 14:14:36 +01:00
fde66e3018
gnu: r-multitaper: Update to 1.0-14.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
2017-11-03 14:14:36 +01:00
0a123e0609
gnu: r-data-table: Update to 1.10.4-3.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
2017-11-03 14:14:36 +01:00
b5a2f37157
gnu: r-pryr: Update to 0.1.3
...
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
2017-11-03 14:14:36 +01:00
bc409c8d3b
gnu: r-lazyeval: Update to 0.2.1.
...
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
2017-11-03 14:14:36 +01:00
6b968c4cd3
gnu: Add r-corrplot.
...
* gnu/packages/cran.scm (r-corrplot): New variable.
2017-11-03 10:34:24 +01:00
81e0b62502
gnu: Add r-ggrepel.
...
* gnu/packages/cran.scm (r-ggrepel): New variable.
2017-11-03 10:34:23 +01:00
0f3142e7c3
gnu: linux-libre: Update to 4.13.11.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.11.
(%linux-libre-hash): Update hash.
2017-11-03 01:31:06 -04:00
336b8d422d
gnu: linux-libre@4.9: Update to 4.9.60.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.60.
2017-11-03 01:30:25 -04:00
15d44dfe22
gnu: linux-libre@4.4: Update to 4.4.96.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.96.
2017-11-03 01:29:33 -04:00
72df48dbad
gnu: Add kodi-cli.
...
* gnu/packages/kodi.scm (kodi-cli): New variable.
2017-11-03 06:46:03 +03:00
1d84500a72
gnu: conda: Fix environment scripts.
...
* gnu/packages/package-management.scm (conda)[arguments]: Add phase
"undo-wrap".
2017-11-03 00:12:46 +01:00
ada53b1d50
Revert "gnu: itstool: Update to 2.0.4."
...
This reverts commit 13fbd174b5
2017-11-02 23:00:23 +01:00
77576be41f
gnu: openssl@1.1: Update to 1.1.0g [fixes CVE-2017-3735, CVE-2017-2736].
...
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0g.
[source]: Add HTTPS mirror.
2017-11-02 22:21:59 +01:00
1df4f5c919
gnu: openssl@1.0: Replace with 1.0.2m [fixes CVE-2017-3735, CVE-2017-2736].
...
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2m): New public variable.
2017-11-02 22:21:59 +01:00
22bf67d1f4
gnu: enlightenment: Update to 0.22.0.
...
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.0.
2017-11-02 23:05:11 +02:00
41b5408235
gnu: efl: Update to 1.20.5.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.5.
2017-11-02 23:05:09 +02:00
bc183968f5
gnu: vte-ng: Update to 0.50.2.a.
...
* gnu/packages/gnome.scm (vte-ng): Update to 0.50.2.a.
2017-11-02 21:17:41 +01:00
52995941bc
gnu: gnome-todo: Update to 3.26.2.
...
* gnu/packages/gnome.scm (gnome-todo): Update to 3.26.2.
2017-11-02 21:10:21 +01:00
92c9392767
gnu: dconf-editor: Update to 3.26.2.
...
* gnu/packages/gnome.scm (dconf-editor): Update to 3.26.2.
2017-11-02 21:10:21 +01:00
b39e612115
gnu: gnome-clocks: Update to 3.26.1.
...
* gnu/packages/gnome.scm (gnome-clocks): Update to 3.26.1.
2017-11-02 21:10:20 +01:00
1b59d45ee4
gnu: file-roller: Update to 3.26.2.
...
gnu/packages/gnome.scm (file-roller): Update to 3.26.2.
2017-11-02 21:10:20 +01:00
46994d0d4c
gnu: aisleriot: Update to 3.22.4.
...
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.4.
2017-11-02 21:10:19 +01:00
03e775d4e8
gnu: knot: Update to 2.6.1.
...
* gnu/packages/dns.scm (knot): Update to 2.6.1.
2017-11-02 21:10:18 +01:00
73b80ff924
gnu: miniupnpc: Update to 2.0.20171102.
...
* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20171102.
2017-11-02 21:10:18 +01:00
3440f12a7e
gnu: mpv: enable Wayland support.
...
* gnu/packages/video.scm (mpv)[inputs]: Add wayland and libxkbcommon.
2017-11-02 16:03:25 -04:00
13fbd174b5
gnu: itstool: Update to 2.0.4.
...
* gnu/packages/glib.scm (itstool): Update to 2.0.4.
[inputs]: Replace python and python-libxml2 with python-2 and python2-libxml2.
2017-11-02 15:37:22 -04:00
67bd376b1a
gnu: gnome-maps: Update to 3.26.2.
...
* gnu/packages/geo.scm (gnome-maps): Update to 3.26.2.
[arguments]: In 'install' phase, add webkitgtk to LD_LIBRARY_PATH.
2017-11-02 14:42:58 -04:00
4dd137d508
gnu: libgweather: Update to 3.26.0.
...
* gnu/packages/gnome.scm (libgweather): Update to 3.26.0.
2017-11-02 12:05:03 -04:00
bb27eb0dbf
gnu: Add java-plexus-classworlds.
...
* gnu/packages/java.scm (java-plexus-classworlds): New variable.
2017-11-02 13:07:38 +01:00
4d50897515
gnu: Add java-powermock-api-easymock.
...
* gnu/packages/java.scm (java-powermock-api-easymock): New variable.
2017-11-02 13:07:30 +01:00
33db168181
gnu: Add java-powermock-modules-junit4.
...
* gnu/packages/java.scm (java-powermock-modules-junit4): New variable.
2017-11-02 13:07:27 +01:00
6c21d46c70
gnu: Add java-powermock-modules-junit4-common.
...
* gnu/packages/java.scm (java-powermock-modules-junit4-common): New
variable.
2017-11-02 13:07:24 +01:00
2d5d65d7dd
gnu: Add java-powermock-api-support.
...
* gnu/packages/java.scm (java-powermock-api-support): New variable.
2017-11-02 13:07:22 +01:00
d4a4d5da60
gnu: Add java-powermock-core.
...
* gnu/packages/java.scm (java-powermock-core): New variable.
2017-11-02 13:07:19 +01:00
8d6a48150a
gnu: Add java-powermock-reflect.
...
* gnu/packages/java.scm (java-powermock-reflect): New variable.
* gnu/packages/patches/java-powermock-fix-java-files.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-11-02 13:07:17 +01:00
5619556b24
gnu: Add java-xerial-core.
...
* gnu/packages/java.scm (java-xerial-core): New variable.
2017-11-02 13:07:15 +01:00
a53d9ac0f2
gnu: Add java-lmax-disruptor.
...
* gnu/packages/java.scm (java-lmax-disruptor): New variable.
2017-11-02 13:07:12 +01:00
3120836732
gnu: Add java-bouncycastle-bcpkix.
...
* gnu/packages/java.scm (java-bouncycastle-bcpkix): New variable.
2017-11-02 13:07:09 +01:00
62315865df
gnu: Add java-bouncycastle-bcprov.
...
* gnu/packages/java.scm (java-bouncycastle-bcprov): New variable.
2017-11-02 13:07:07 +01:00
d54d7d31ac
gnu: Add java-lz4.
...
* gnu/packages/java.scm (java-lz4): New variable.
2017-11-02 13:07:04 +01:00
eaf3cb7a41
gnu: Add java-mvel2.
...
* gnu/packages/java.scm (java-mvel2): New variable.
2017-11-02 13:07:01 +01:00
1717a7de7b
gnu: Add java-jnacl.
...
* gnu/packages/java.scm (java-jnacl): New variable.
2017-11-02 13:06:59 +01:00
0442d897e9
gnu: Add java-testng.
...
* gnu/packages/java.scm (java-testng): New variable.
2017-11-02 13:06:56 +01:00
ca98e4481f
gnu: Add java-fest-assert.
...
* gnu/packages/java.scm (java-fest-assert): New variable.
2017-11-02 13:06:54 +01:00
3c6c835806
gnu: Add java-fest-test.
...
* gnu/packages/java.scm (java-fest-test): New variable.
2017-11-02 13:06:51 +01:00
7a343e971a
gnu: Add java-fest-util.
...
* gnu/packages/java.scm (java-fest-util): New variable.
2017-11-02 13:06:48 +01:00
e84b899d50
gnu: Add java-jmock-legacy.
...
* gnu/packages/java.scm (java-jmock-legacy): New variable.
2017-11-02 13:06:46 +01:00
25436c6d03
gnu: Add java-jmock-junit4.
...
* gnu/packages/java.scm (java-jmock-junit4): New variable.
2017-11-02 13:06:43 +01:00
045124ae2f
gnu: Add java-jmock.
...
* gnu/packages/java.scm (java-jmock): New variable.
2017-11-02 13:06:41 +01:00
11bc385b7b
gnu: Add java-bsh.
...
* gnu/packages/java.scm (java-bsh): New variable.
2017-11-02 13:06:38 +01:00
a6dd06d0e2
gnu: Add java-jcommander.
...
* gnu/packages/java.scm (java-jcommander): New variable.
2017-11-02 13:06:19 +01:00
2524a2a17a
gnu: five-or-more: Update to 3.26.0.
...
* gnu/packages/gnome.scm (five-or-more): Update to 3.26.0.
2017-11-02 07:36:58 -04:00
30ee6bf5d2
gnu: dejagnu: Update to 1.6.1.
...
* gnu/packages/dejagnu.scm (dejagnu): Update to 1.6.1.
2017-11-02 13:12:15 +02:00
50e3f2a5a4
gnu: emacs-helm-make: Update to 0.1.0-1.21c1bfa.
...
* gnu/packages/emacs.scm (emacs-helm-make): Update to 0.1.0-1.21c1bfa.
2017-11-02 11:05:46 +03:00
a254971350
gnu: units: Add readline input.
...
* gnu/packages/maths.scm (units)[inputs]: Add readline.
2017-11-01 17:17:01 -05:00
0498d24866
gnu: units: Add python input.
...
* gnu/packages/maths.scm (units)[inputs]: New field.
[arguments]: New field. Add 'wrap-units_cur phase.
2017-11-01 17:15:10 -05:00
f11d2849a1
gnu: units: Update to 2.16.
...
* gnu/packages/maths.scm (units): Update to 2.16.
2017-11-01 17:11:15 -05:00
55ed15baba
gnu: gnome-mines: Update to 3.26.0.
...
* gnu/packages/gnome.scm (gnome-mines): Update to 3.26.0.
2017-11-01 19:49:46 -04:00
88b35013b7
gnu: git: Update to 2.15.0.
...
* gnu/packages/version-control.scm (git): Update to 2.15.0.
2017-11-01 21:26:58 +01:00
61e1d6a791
gnu: imagemagick: Update to 6.9.9-21.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-21.
[home-page]: Use HTTPS.
2017-11-01 21:26:50 +01:00
449ad88bb5
gnu: libass: Update to 0.14.0.
...
* gnu/packages/video.scm (libass): Update to 0.14.0.
[native-inputs]: Change from YASM to NASM.
2017-11-01 20:29:32 +01:00
5d7141cd28
tests: ssh: Make sure we can run executables from PATH.
...
* gnu/tests/ssh.scm (run-ssh-test): Add tests for running commands in system
and user profile.
2017-11-01 20:29:32 +01:00
2c16be569c
system: Return early in skeleton '.bashrc' when the shell is non-interactive.
...
* gnu/system/shadow.scm (default-skeletons)[bashrc]: Add return statement.
2017-11-01 20:29:32 +01:00
0ab59dd8b8
system: Test for interactive shell instead of `cat` in skeleton '.bashrc'.
...
* gnu/system/shadow.scm (default-skeletons)[bashrc]: Wrap $SSH_CLIENT test in
a conditional testing for interactive shell.
2017-11-01 20:29:32 +01:00
83a7a88f93
gnu: feh: Enable tests.
...
* gnu/packages/image-viewers.scm (feh)[arguments]: Remove #:tests?. Add
#:test-target.
[native-inputs]: Add PERL and PERL-TEST-COMMAND. New field.
2017-11-01 20:29:32 +01:00
6b520156c2
gnu: Add perl-test-command.
...
* gnu/packages/perl.scm (perl-test-command): New public variable.
2017-11-01 20:29:32 +01:00
5010d0e364
gnu: wine64: Add aarch64-linux to supported-systems.
...
* gnu/packages/wine.scm (wine64)[supported-systems]: Add aarch64-linux.
2017-11-01 10:17:18 +02:00
03d6e9dd08
gnu: vsearch: Update to 2.5.2.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.5.2.
2017-11-01 10:57:05 +10:00
e126b79736
gnu: diamond: Update to 0.9.11.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.11.
2017-11-01 10:57:03 +10:00
e6ee13599d
gnu: libfilezilla: Update to 0.11.1.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.11.1.
2017-11-01 01:02:04 +01:00
9b5db24e7a
gnu: gnome-mpv: Update to 0.13.
...
* gnu/packages/video.scm (gnome-mpv): Update to 0.13.
2017-11-01 01:02:04 +01:00
78ab71ce1d
gnu: you-get: Update to 0.4.939.
...
* gnu/packages/video.scm (you-get): Update to 0.4.939.
2017-11-01 01:02:03 +01:00
bc8bd40e6a
gnu: ncmpcpp: Update to 0.8.1.
...
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.8.1.
2017-10-31 18:13:53 -04:00
cd5c3979d1
gnu: Add emacs-ggtags.
...
* gnu/packages/emacs.scm (emacs-ggtags): New variable.
2017-10-31 20:08:00 +03:00
90bf26088e
gnu: Add sakura.
...
* gnu/packages/terminals.scm (sakura): New variable.
2017-10-31 09:41:52 -04:00
016590a951
gnu: Add emacs-company-quickhelp.
...
* gnu/packages/emacs.scm (emacs-company-quickhelp): New variable.
2017-10-31 14:55:18 +03:00
56295c5160
gnu: lxc: Update to 2.1.1.
...
* gnu/packages/virtualization.scm (lxc): Update to 2.1.1.
2017-10-31 19:28:09 +08:00
2e4bb8c817
gnu: Add emacs-helm-make.
...
* gnu/packages/emacs.scm (emacs-helm-make): New variable.
2017-10-31 14:10:37 +03:00
7bf59f7021
gnu: Remove cufflinks.
...
Cufflinks includes essential non-free code.
Fixes <https://bugs.gnu.org/28946 >.
* gnu/packages/bioinformatics.scm (cufflinks): Remove variable.
2017-10-31 08:17:06 +01:00
b275cd22d4
gnu: apr-util: Update to 1.6.1 [fixes CVE-2017-12618].
...
* gnu/packages/apr.scm (apr): Update to 1.6.1.
2017-10-30 21:46:18 -04:00
b614c48017
gnu: apr: Update to 1.6.3 [fixes CVE-2017-12613].
...
* gnu/packages/apr.scm (apr): Update to 1.6.3.
2017-10-30 21:46:18 -04:00
3022680aba
gnu: mpd: Update to 0.20.11.
...
* gnu/packages/mpd.scm (mpd): Update to 0.20.11.
2017-10-30 21:46:14 -04:00
44b8823fc7
gnu: quagga: Update to 1.2.2 [fix CVE-2017-16227].
...
* gnu/packages/networking.scm (quagga): Update to 1.2.2.
2017-10-30 20:42:13 -04:00
8b17ee4846
gnu: webkitgtk: Update to 2.18.2.
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.2.
2017-10-30 20:07:00 -04:00
c2eb8cd98c
gnu: xorg-server: Build reproducibly.
...
Fixes <https://bugs.gnu.org/24112 >.
* gnu/packages/xorg.scm (xorg-server)[arguments]: Pass "--with-os-name"
and "--with-os-vendor" as #:configure-flags.
Augment 'pre-configure' phase to set 'BUILD_DATE' and 'BUILD_TIME' in
'configure'.
2017-10-31 00:51:37 +01:00
8ff5b8aaa3
gnu: perl-http-cookies: Fix source uri.
...
This is a follow-up to d284f01826
2017-10-30 19:49:37 +02:00
484a1c05d0
gnu: ola: Update to 0.10.5.
...
* gnu/packages/lighting.scm (ola): Update to 0.10.5.
2017-10-30 17:20:43 +01:00
59261ebeea
gnu: ethtool: Update to 4.13.
...
* gnu/packages/networking.scm (ethtool): Update to 4.13.
2017-10-30 17:20:42 +01:00
2fb83ca6c5
gnu: perl-class-tiny: Update to 1.006.
...
* gnu/packages/perl.scm (perl-class-tiny): Update to 1.006.
2017-10-30 17:20:42 +01:00
7e5132a297
gnu: perl-extutils-pkgconfig: Update to 1.16.
...
* gnu/packages/perl.scm (perl-extutils-pkgconfig): Update to 1.16.
2017-10-30 17:20:41 +01:00
72ef03b92b
gnu: perl-json-any: Update to 1.39.
...
* gnu/packages/perl.scm (perl-json-any): Update to 1.39.
2017-10-30 17:20:41 +01:00
caa7adacce
gnu: perl-sub-exporter-progressive: Update to 0.001013.
...
* gnu/packages/perl.scm (perl-sub-exporter-progressive): Update to 0.001013.
2017-10-30 17:20:41 +01:00
922814ae65
gnu: perl-html-lint: Update to 2.26.
...
* gnu/packages/perl.scm (perl-html-lint): Update to 2.26.
2017-10-30 17:20:40 +01:00
d284f01826
gnu: perl-http-cookies: Update to 6.04.
...
* gnu/packages/perl.scm (perl-http-cookies): Update to 6.04.
2017-10-30 17:20:40 +01:00
58ade30228
gnu: perl-xml-libxml: Update to 2.0132.
...
* gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0132.
2017-10-30 17:20:07 +01:00
faffd821f3
gnu: wine: Update to 2.0.3.
...
* gnu/packages/wine.scm (wine): Update to 2.0.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-10-30 10:42:20 -04:00
8fd4320033
gnu: ffmpeg: Configure with frei0r.
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* gnu/packages/video.scm (ffmepg)[inputs]: Add 'frei0r-plugins'.
(arguments)[configure-flags]: Add '--enable-frei0r' and remove
'TODO' comment about frei0r.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-10-30 15:43:21 +02:00
49e1d76dd9
gnu: Add frei0r-plugins.
...
* gnu/packages/video.scm (frei0r-plugins): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-10-30 15:43:21 +02:00
1f6f4c40c1
gnu: Add r-tgconfig.
...
* gnu/packages/statistics.scm (r-tgconfig): New variable.
2017-10-30 12:07:53 +01:00
7941d1ed5d
gnu: Add r-tgstat.
...
* gnu/packages/statistics.scm (r-tgstat): New variable.
2017-10-30 12:07:51 +01:00
491dc2fb16
gnu: java: Fix libjvm.so linkage problem in icedtea-7.
...
* gnu/packages/java.scm (icedtea-7): Add phase to create a symbolic link to
libjvm.so.
2017-10-30 11:19:51 +01:00
91496dfc9a
tests: install: Estimate the installation system disk size.
...
1500 MiB are too small for a current system, thus let
system-disk-image estimate the required size.
* gnu/tests/install.scm: (run-install): Pass "#:disk-image-size
'guess" to system-disk-image.
2017-10-30 09:12:56 +01:00
Ricardo Wurmus