Commit Graph

3680 Commits

Author SHA1 Message Date
Oleg Pykhalov 81a40ee0cb
describe: Add json format.
* guix/scripts/describe.scm (channel->json): New procedure.
(display-checkout-info, display-profile-info): Use this.
(%options): Add 'json' option.
* doc/guix.texi (Invoking guix describe): Document this.
2018-11-22 21:17:54 +03:00
Oleg Pykhalov 8548f99549
describe: Use a procedure to format output.
* guix/scripts/describe.scm (channel->sexp): New procedure.
(display-checkout-info, display-profile-info): Use this.
2018-11-22 21:17:38 +03:00
Ludovic Courtès a29ce1f97d
guix system: Fix 'init' again.
Fixes a regression introduced in
52ee4479ef, whereby 'install' would now be
passed a procedure instead of a lowerable object.

* guix/scripts/system.scm (perform-action): Pass BOOTLOADER-SCRIPT as
the #:bootloader-installer argument of 'install'.
2018-11-21 23:26:58 +01:00
Oleg Pykhalov 1255400faa
describe: Add profile option.
* guix/scripts/describe.scm (%options): Add profile option.
(show-help): Document this.
(display-checkout-info): Check for profile argument.
* doc/guix.texi (Invoking guix describe): Document this.
2018-11-21 14:41:13 +03:00
Oleg Pykhalov 3dd28aa37c
describe: Fix 'format' option.
Fix ‘guix describe’ ignores ‘--format=FORMAT’ option.

* guix/scripts/describe.scm (%options): Fix 'format' option.
2018-11-21 14:41:13 +03:00
Ludovic Courtès 40bbcaa65d
lint: 'check-derivation' fully disables grafts.
Previously grafting could take place indirectly, for instance when
lowering origins.

* guix/scripts/lint.scm (check-derivation)[try]: Parameterize
'%graft?'.
2018-11-20 18:36:05 +01:00
Ludovic Courtès 3b32891b12
lint: 'check-derivation' tries all the package's supported systems.
This allows us to catch architecture-specific evaluation failures.

* guix/scripts/lint.scm (check-derivation): Move body into...
[try]: ... this.  New procedure.
Call 'try' for each supported system of PACKAGE.
2018-11-20 18:36:05 +01:00
Alex Vong df730f6757
build-system: Add 'clojure-build-system'.
* guix/build-system/clojure.scm, guix/build/clojure-build-system.scm: New
files.
* guix/build/clojure-utils.scm (@*, @@*): New macros.
(%source-dirs, %test-dirs, %compile-dir, %main-class, %omit-source?,
%aot-include, %aot-exclude, %tests?, %test-include, %test-exclude,
%clojure-regex): New variables.
(package-name->jar-names, canonicalize-relative-path, find-files*,
file-sans-extension, relative-path->clojure-lib-string, find-clojure-libs,
compiled-from?, include-list\exclude-list, eval-with-clojure, create-jar):
New procedures.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document 'clojure-build-system'.
2018-11-19 12:07:44 +01:00
Alex Vong 53f316ab90
guix: Add clojure-utils.
* guix/build/clojure-utils.scm: New file.
* gnu/packages/lisp.scm (clojure)[arguments]: Use it.
* Makefile.am (MODULES): Add it.
2018-11-19 12:05:19 +01:00
Ludovic Courtès 1d6669afef
guix system: Fix 'init'.
Fixes a regression introduced in
52ee4479ef, whereby 'install' would now be
passed a <computed-file> object instead of a derivation.

* guix/scripts/system.scm (install): Call 'lower-object' on BOOTCFG.
2018-11-19 09:59:07 +01:00
Ludovic Courtès ab6caf4f1d
guix system: Clarify 'perform-action'.
* guix/scripts/system.scm (perform-action): Move non-monadic local
variables outside the 'mlet' form.
2018-11-18 23:37:45 +01:00
Ludovic Courtès 52ee4479ef
guix system: De-monadify bootloader installation script.
* guix/scripts/system.scm (bootloader-installer-derivation): Rename
to...
(bootloader-installer-script): ... this.  Use 'scheme-file' instead of
'gexp->file'.
(perform-action): Adjust accordingly.  Move 'lower-object' call to the
point where DRVS is computed.
2018-11-18 23:37:45 +01:00
Ludovic Courtès 6e47628d4c
guix system: Simplify bootloader package handling.
* guix/scripts/system.scm (perform-action): Remove 'bootloader-package'
variable.  Pass (bootloader-package bootloader) as the 2nd argument to
'bootloader-installer-derivation'.  Remove BOOTLOADER-PACKAGE from DRVS
since it's redundant.
2018-11-18 23:37:45 +01:00
Ludovic Courtès 9782c82217
system: De-monadify 'operating-system-bootcfg'.
* gnu/system.scm (operating-system-bootcfg): Remove 'mlet*' and
'lower-object' call.
* gnu/system/vm.scm (system-disk-image)
(system-qemu-image/shared-store): Adjust accordingly.
* guix/scripts/system.scm (perform-action): Add 'lower-object' call for
BOOTCFG.
2018-11-18 23:37:45 +01:00
Julien Lepiller 564cf93f2a
gnu: ocaml: Update to 4.7.0.
Update ocaml to the latest version and fixes dependent packages by
updating them or by adding new inputs, such as ocaml-num and ocamlbuild,
that were removed from the core ocaml package. Rename packages that
cannot be built with the new compiler with an ocaml4.02 prefix. Add
ocaml4.02 dependencies.

* gnu/packages/ocaml.scm (ocaml): Update to 4.7.0.
(ocaml-4.02, ocamlbuild, camlp4-4.02, ocaml-num, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit, ocaml4.02-camlzip)
(ocaml4.02-ocamlmod, ocaml4.02-zarith, ocaml4.02-qcheck, ocaml4.02-qtest)
(ocaml4.02-stringext, ocaml4.02-bisect, dune, ocaml-migrate-parsetree)
(ocaml-ppx-tools-versioned, ocaml-ppx-tools-versioned)
(ocaml4.02-bitstring, ocaml4.02-result, ocaml4.02-topkg, ocaml4.02-rresult)
(ocaml4.02-sqlite3, ocaml4.02-csv, ocaml4.02-mtime, ocaml4.02-cmdliner)
(ocaml4.02-fmt, ocaml4.02-astring, ocaml4.02-alcotest, ocaml4.02-ppx-tools)
(ocaml4.02-react, ocaml4.02-ssl, ocaml4.02-lwt, ocaml-lwt-log)
(ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath, ocaml4.02-bos)
(ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar, ocaml4.02-uutf)
(ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64, ocaml4.02-omake)
(ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-cppo, ocaml-seq, ocaml4.02-seq)
(ocaml4.02-re, ocaml4.02-ocplib-endian, ocaml4.02-easy-format)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): New packages.
(opam): Update to 2.0.0.
(camlp4): Update to 4.07+1.
(camlp5): Update to 7.06.
(hevea): Update to 2.32.
(coq)[inputs]: Add ocaml-num.
(emacs-tuareg): Update to 2.2.0.
(ocaml-menhir)[native-inputs]: Add ocamlbuild.
(ocaml-lablgtk): Update to 2.18.6.
(unison)[inputs]: Use ocaml-4.02.
(ocaml-findlib): Update to 1.8.0.
(ocaml-ounit)[native-inputs]: Add ocamlbuild.
(ocamlmod): Update to 0.0.9.
(ocaml-frontc)[arguments]: Use ocaml-4.02.
(ocaml-qcheck)[native-inputs]: Add ocamlbuild.
(ocaml-qtest)[native-inputs]: Remove ocaml-findlib and add ocamlbuild.
(ocaml-stringext)[native-inputs]: Add ocamlbuild.
(ocaml-bisect): Update to 1.3.1.
(ocaml4.01-bisect): Downgrade to 1.3.
(ocaml-bitstring): Update to 3.1.0.
(ocaml-topkg)[native-inputs]: Add ocamlbuild.
(ocaml-rresult)[native-inputs]: Add ocamlbuild.
(ocaml-sqlite3)[native-inputs]: Add ocamlbuild.
(ocaml-csv)[native-inputs]: Add ocamlbuild.
(ocaml-mtime)[native-inputs]: Add ocamlbuild.
(ocaml-cmdliner)[native-inputs]: Add ocamlbuild.
(ocaml-fmt)[native-inputs]: Add ocamlbuild.
(ocaml-astring)[native-inputs]: Add ocamlbuild.
(ocaml-alcotest)[native-inputs]: Add ocamlbuild.
(ocaml-ppx-tools)[native-inputs]: Add ocamlbuild.
(ocaml-react)[native-inputs]: Add ocamlbuild.
(ocaml-ssl)[arguments]: Return #t in phases.
(ocaml-lwt): Update to 4.1.0.
(ocaml-logs)[native-inputs]: Add ocamlbuild.
(ocaml-fpath)[native-inputs]: Add ocamlbuild.
(ocaml-bos)[native-inputs]: Add ocamlbuild.
(ocaml-xmlm): Update to 1.3.0.
(ocaml-ulex): Update to 1.2.0.
(ocaml-uchar)[native-inputs]: Add ocamlbuild.
(ocaml-uutf): Update to 1.0.1.
(ocaml-jsonm): Update to 1.0.1.
(ocaml-ocurl): Update to 0.8.2.
(ocaml-base64)[native-inputs]: Add ocamlbuild.
(ocamlify)[native-inputs]: Use ocaml-4.02.
(omake): Update to 0.10.3.
(ocaml-batteries): Update to 2.9.0.
(ocaml-pcre)[native-inputs]: Add ocamlbuild.
(ocaml-expect): Update 0.0.6.
(ocaml4.02-fileutils): Update to 0.5.3.
(ocaml-oasis): Update 0.4.11.
(ocaml-js-build-tools)[native-inputs]: Add ocamlbuild.
(ocaml-bin-prot): Rename to ocaml4.02-bin-prot.
(ocaml-fieldslib): Rename to ocaml4.02-fieldslib.
(ocaml-ppx-core): Rename to ocaml4.02-ppx-core.
(ocaml-ppx-optcomp): Rename to ocaml4.02-ppx-optcomp.
(ocaml-ppx-driver): Rename to ocaml4.02-ppx-driver.
(ocaml-cppo): Update to 1.6.5.
(ocaml-ppx-deriving): Rename to ocaml4.02-ppx-deriving.
(ocaml-ppx-type-conv): Rename to ocaml4.02-ppx-type-conv.
(ocaml-ppx-inline-test): Rename to ocaml4.02-ppx-inline-test.
(ocaml-ppx-bench): Rename to ocaml4.02-ppx-bench.
(ocaml-ppx-compare): Rename to ocaml4.02-ppx-compare.
(ocaml-sexplib): Rename to ocaml4.02-sexplib.
(ocaml-typerep): Rename to ocaml4.02-typerep.
(ocaml-variantslib): Rename to ocaml4.02-variantslib.
(ocaml-ppx-sexp-conv): Rename to ocaml4.02-ppx-sexp-conv.
(ocaml-ppx-variants-conv): Rename to ocaml4.02-ppx-variants-conv.
(ocaml-ppx-here): Rename to ocaml4.02-ppx-here.
(ocaml-ppx-assert): Rename to ocaml4.02-ppx-assert.
(ocaml-ppx-enumerate): Rename to ocaml4.02-ppx-enumerate.
(ocaml-ppx-let): Rename to ocaml4.02-ppx-let.
(ocaml-ppx-typerep-conv): Rename to ocaml4.02-ppx-typerep-conv.
(ocaml-ppx-sexp-value): Rename to ocaml4.02-ppx-sexp-value.
(ocaml-ppx-pipebang): Rename to ocaml4.02-ppx-pipebang.
(ocaml-ppx-bin-prot): Rename to ocaml4.02-ppx-bin-prot.
(ocaml-ppx-fail): Rename to ocaml4.02-ppx-fail.
(ocaml-ppx-custom-printf): Rename to ocaml4.02-ppx-custom-printf.
(ocaml-ppx-sexp-message): Rename to ocaml4.02-ppx-sexp-message.
(ocaml-ppx-fields-conv): Rename to ocaml4.02-ppx-fields-conv.
(ocaml-re): Update to 1.8.0.
(ocaml-ppx-expect): Rename to ocaml4.02-ppx-expect.
(ocaml-ppx-jane): Rename to ocaml4.02-ppx-jane.
(ocaml-core-kernel): Rename to ocaml4.02-core-kernel.
(ocaml-async-kernel): Rename to ocaml4.02-async-kernel.
(ocaml-async-rpc-kernel): Rename to ocaml4.02-async-rpc-kernel.
(ocaml-core): Rename to ocaml4.02-core.
(ocaml-async-unix): Rename to ocaml4.02-async-unix.
(ocaml-async-extra): Rename to ocaml4.02-async-extra.
(ocaml-async): Rename to ocaml4.02-async.
(ocaml-ocplib-endian)[native-inputs]: Update to 1.0.
(ocaml-cstruct): Rename to ocaml4.02-cstruct.
(ocaml-hex): Rename to ocaml4.02-hex.
(ocaml-ezjsonm): Rename to ocaml4.02-ezjsonm.
(ocaml-uri): Rename to ocaml4.02-uri.
(optcomp): Use ocaml-4.02.
(ocaml-piqilib): Update to 0.6.14.
(ocaml-uuidm)[native-inputs]: Add ocamlbuild.
(ocaml-graph): Update to 1.8.8.
(ocaml-piqi): Update to 0.7.6.
(bap): Update to 1.3.0.
(ocaml-camomile): Update to 1.0.1.
(ocaml-jbuilder): Use ocaml-4.02.
(ocaml-lambda-term): Update to 1.13.
(ocaml-utop): Update to 2.2.0.
(ocaml-integers)[native-inputs]: Add ocamlbuild.
(ocaml-ctypes): Update to 0.14.0.
(ocaml-ocb-stubblr)[native-inputs]: Add ocamlbuild.
(ocaml-tsdl)[native-inputs]: Add ocamlbuild.
* gnu/packages/machine-learning.scm (ocaml-mcl): Use ocaml-4.02.
* gnu/packages/maths.scm (cubicle): Update to 1.1.2.
* gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch:
Update patch.
* guix/build-system/ocaml.scm: (default-ocaml4.02, default-ocaml4.02-findlib)
(package-with-ocaml4.02, strip-ocaml4.02-variant): New variables.
2018-11-18 18:51:08 +01:00
Julien Lepiller 5a0affba3f
build-system/ocaml: Use invoke and return #t.
* guix/build/ocaml-build-system.scm (configure, build, check, install)
(prepare-install): Use invoke and return #t.
2018-11-18 18:40:53 +01:00
Clément Lassieur d827fd31ca
progress: Do not display the last 0B transfer when size is unknown.
* guix/progress.scm (display-download-progress): Don't display anything when
both SIZE and TRANSFERRED are null.
2018-11-16 14:53:44 +01:00
Clément Lassieur 0289dc1473
progress: Fix crash because of division by zero.
* guix/progress.scm (display-download-progress): Handle the case where SIZE is
null.
2018-11-16 14:53:40 +01:00
Ludovic Courtès 89f1fee8e7
download: Access content-addressed mirrors over HTTPS.
Bug <http://bugs.gnu.org/22774> is no longer relevant now that we use
"builtin:download" exclusively.

* guix/download.scm (%content-addressed-mirrors): Use "https", not
"http".
2018-11-14 21:34:08 +01:00
Ludovic Courtès ee2cfdfe86
download: Add Software Heritage as a content-addressed mirror.
* guix/download.scm (%content-addressed-mirrors): Add Software
Heritage.
2018-11-14 21:34:07 +01:00
Ludovic Courtès f5a2724ae4
deduplication: Restore directory mtime and permissions after deduplication.
Fixes <https://bugs.gnu.org/33361>.

* guix/store/deduplication.scm (replace-with-link): Call 'set-file-time'
and 'chmod' after 'rename-file'.
* tests/nar.scm ("restore-file-set with directories (signed, valid)"):
New test.
2018-11-13 14:59:46 +01:00
Ludovic Courtès 8390869811
tests: Check file canonicalization for 'restore-file-set'.
* guix/tests.scm (canonical-file?): New procedure.
* tests/nar.scm ("restore-file-set (signed, valid)"): Check that every
item of FILES matches 'canonical-file?'.
2018-11-13 14:59:46 +01:00
Ludovic Courtès 1afe1985f5
nar: Access the database instead of connecting to the daemon.
* guix/store/database.scm (%default-database-file): New variable.
(path-id): Export.
* guix/nar.scm (finalize-store-file): Use 'with-database' instead of
'with-store', and use 'path-id' instead of 'valid-path?'.
2018-11-13 14:59:45 +01:00
Ludovic Courtès c6080c3249
store: Add a functional object cache and use it in 'lower-object'.
This leads to ~25% improvements on things like:

  guix system build desktop.tmpl --no-grafts -d

* guix/store.scm (<nix-server>)[object-cache]: New field.
* guix/store.scm (open-connection): Initialize it.
(cache-object-mapping, lookup-cached-object, %mcached): New procedures.
(mcached): New macro.
* guix/gexp.scm (lower-object): Use it.
* guix/grafts.scm (grafting?): New procedure.
2018-11-12 23:37:13 +01:00
Ludovic Courtès 9ed86fe175
tests: Add 'test-assertm' to (guix tests).
* guix/tests.scm (test-assertm): New macro.
* tests/gexp.scm (test-assertm): Remove.
* tests/profiles.scm (test-assertm): Remove.
* tests/challenge.scm (%store, test-assertm): Remove.
* tests/debug-link.scm (%store, test-assertm): Remove.
* tests/size.scm (%store, test-assertm): Remove.
2018-11-12 23:37:13 +01:00
Pierre Neidhardt 0fd115d536
build-system/go: Plan removal of the pkg folder for go-1.11 onward.
* guix/build/go-build-system.scm (install): New comment.
2018-11-12 10:28:46 +01:00
Ludovic Courtès 6c843907e9
guix system: Invoking 'guix system init' twice keeps timestamps zeroed.
Fixes a bug whereby running 'guix system init config.scm /mnt' twice
would, on the second run, change timestamps in /mnt/gnu/store from the
Epoch to now.  This is because the 'register-path' call would bypass the
'reset-timestamps' phase altogether in that case, as a consequence of
commit bb3b6ccb05.

Reported by Christopher Baines.

* guix/scripts/system.scm (install): When TARGET/var/guix exists, delete
it.  As a side-effect, this ensures that later on, the 'register-path'
call invokes 'reset-timestamps' on all the copied store items.
2018-11-11 23:53:29 +01:00
Ludovic Courtès 652163154c
guix package: '--show' errors when asked for a non-existent package.
Fixes <https://bugs.gnu.org/33323>.
Reported by swedebugia <swedebugia@riseup.net>.

* guix/scripts/package.scm (process-query): Call 'leave' when
'find-packages-by-name' returns the empty list.
* tests/guix-package.sh: Test it.
2018-11-11 23:53:29 +01:00
Ludovic Courtès a3b72a8f17
ci: Add procedures to access evaluations.
* guix/ci.scm (<checkout>, <evaluation>): New record types.
(latest-builds): Add #:evaluation and #:system and honor it.  Define
'option'.
(json->checkout, json->evaluation, latest-evaluations)
(evaluations-for-commit): New procedures.
2018-11-10 23:33:46 +01:00
Ludovic Courtès 5230dce154
gnu-maintenance: Base kernel.org updater on HTML directory listings.
Partially fixes <https://bugs.gnu.org/28159>.

The FTP server at ftp.free.fr had become unable to produce directory
listings, effectively making the updater dysfunctional.  Furthermore FTP
is considered obsolescent so HTTP + HTML looks more future-proof.

* guix/gnu-maintenance.scm (html->sxml, html-links)
(latest-html-release): New procedures.
(latest-kernel.org-release): Rewrite in terms of 'latest-html-release'.
2018-11-10 23:33:46 +01:00
Ludovic Courtès bc1ff4aaba
gnu-maintenance: ".sign" and ".asc" files no longer match 'release-file?'.
* guix/gnu-maintenance.scm (release-file?): Exclude ".sign" and ".asc"
file in addition to ".sig".
2018-11-10 23:33:46 +01:00
Ludovic Courtès ea68b3f652
pull: Add missing monadic 'return'.
Fixes a regression introduced in
5f7dd092ca where, upon completion, 'guix
pull' would fail (instead of printing the new/upgraded packages) with
ugly errors like:

  successfully built /gnu/store/…-profile.drv
  1 package in profile
  Backtrace:
  […]
  In guix/store.scm:
    1605:24  1 (run-with-store _ _ #:guile-for-build _ #:system _ # _)
  In unknown file:
	     0 (_ #<build-daemon 256.97 2476b40>)

  ERROR: Wrong type to apply: #t

Reported by thorwil on #guix.

* guix/scripts/pull.scm (build-and-install): Add missing 'return' when
DRY-RUN? is wrong.
2018-11-07 21:56:16 +01:00
Ludovic Courtès 72dc64f8f7
store-copy: Canonicalize the mtime and permissions of the store copy.
Fixes a bug whereby directories in the output of 'guix pack -f tarball'
would not be read-only.

* guix/build/store-copy.scm (reset-permissions): New procedure.
(populate-store): Pass #:keep-mtime? #t to 'copy-recursively'.  Call
'reset-permissions'.
* tests/pack.scm ("self-contained-tarball"): In CHECK, define
'canonical?' and use it to check that every file has an mtime of 1 and
is read-only.
* tests/guix-pack.sh: Invoke "chmod -Rf +w" before "rm -rf" in trap.
2018-11-06 23:21:24 +01:00
Ludovic Courtès 598a6b87cc
pack: Squashfs backend now honors '--localstatedir'.
* guix/scripts/pack.scm (squashfs-image)[database]: New variable.
[build]: Add (gnu build install) to the closure.  Call
'install-database-and-gc-roots' when DATABASE is true, and invoke
mksquashfs once more.
* tests/pack.scm ("squashfs-image + localstatedir"): New test.
2018-11-06 23:21:24 +01:00
Ludovic Courtès f5a2fb1bfb
pack: Docker backend now honors '--localstatedir'.
* guix/docker.scm (build-docker-image): Add #:database parameter.
Create /var/guix/db, /var/guix/profiles, etc. when DATABASE is true.
* guix/scripts/pack.scm (docker-image): Export.  Remove #:deduplicate?
parameter.  Define 'database' and pass it to 'docker-image'.
* tests/pack.scm (test-assertm): Recompile the derivation of
%BOOTSTRAP-GUILE.
("docker-image + localstatedir"): New test.
2018-11-06 23:21:24 +01:00
Ludovic Courtès b27ef1d46c
pack: Import (guix store database) only when '--localstatedir' is passed.
This is another way to address <https://bugs.gnu.org/32184>, which was
previously addressed in commit 19c924af4f.

* gnu/build/install.scm (register-closure): Move to...
* gnu/build/vm.scm (register-closure): ... here.  New procedure.
* guix/scripts/pack.scm (self-contained-tarball)[build]: Remove
now unneeded 'with-extensions' form and custom (guix config) module.
* tests/guix-pack.sh: Revert the strategy from
commit 19c924af4f.
* tests/pack.scm ("self-contained-tarball"): Likewise.
2018-11-06 23:21:23 +01:00
Ludovic Courtès ec4c81fe32
pack: Move store database creation to a separate derivation.
* guix/scripts/pack.scm (store-database): New procedure.
(self-contained-tarball): Use it when LOCALSTATEDIR? is true.
Remove 'schema' and add 'database'.
[build]: Pass DATABASE to 'populate-single-profile-directory'.
(squashfs-image): Remove #:deduplicate? parameter.
[build]: Remove (gnu build install) and (guix config) from the imported
modules.  Remove 'with-extensions'.
* gnu/build/install.scm (populate-single-profile-directory): Remove
 #:deduplicate?, #:register?, and #:schema; add #:database.  Remove call
to 'register-closure' and simply copy DATABASE instead.
2018-11-06 23:21:23 +01:00
Ricardo Wurmus 9da4848632
guix: Update to Bioconductor 3.8.
* guix/import/cran.scm (%bioconductor-version): Update to 3.8.
* guix/build-system/r.scm (bioconductor-uri): Update archive URL.
2018-11-06 18:21:24 +01:00
Ludovic Courtès e3744779aa
self: Install shell completion files.
* guix/self.scm (miscellaneous-files): New procedure.
(whole-package): Remove #:substitute-keys, add #:miscellany.
[build]: Remove code for SUBSTITUTE-KEYS and add code to copy MISCELLANY
to OUTPUT.
(compiled-guix): Adjust call to 'whole-package'.
2018-11-06 17:00:02 +01:00
Ludovic Courtès 6cf502d164
self: Rename 'sub-directory' to 'file-append*'.
* guix/self.scm (sub-directory): Rename to...
(file-append*): ... this.  Add #:recursive? parameter and pass it to
'local-file'.
(locale-data, info-manual, compiled-guix): Adjust accordingly.
2018-11-06 17:00:02 +01:00
Maxim Cournoyer 2e4d83398b
ssh: Honor the SOCKET-NAME argument of connect-to-remote-daemon.
* guix/ssh.scm (connect-to-remote-daemon): Pass the `socket-name' variable to
the `open-connection' call so that it is honored.
2018-11-05 21:28:59 -05:00
Ludovic Courtès 8d3beb3a44
self: Install substitute keys.
* guix/self.scm (whole-package): Add #:substitute-keys and honor it.
(compiled-guix): Pass #:substitute-keys to 'whole-package' when
PULL-VERSION is one.
2018-11-06 00:04:11 +01:00
Ludovic Courtès cbe7387c04
self: Remove extra paren in manual version string.
* guix/self.scm (info-manual)[build]: Remove extra closing paren in
VERSION.
2018-11-06 00:04:11 +01:00
Ludovic Courtès 5f7dd092ca
pull: Make '--dry-run' behave as expected.
* guix/scripts/pull.scm (show-help): Document '--dry-run'.
(build-and-install): Add #:dry-run? parameter and honor it.
(guix-pull): Remove (assoc-ref opts 'dry-run?) condition.  Instead, pass
it as #:dry-run? to 'build-and-install'.
* doc/guix.texi (Invoking guix pull): Document '--dry-run'.  Move
'--verbose' to the bottom.
2018-11-06 00:04:11 +01:00
Maxim Cournoyer 2f18b7329d
git-download: Print a message when falling back to a full fetch.
Otherwise the user might believe that git-fetch stalled, observing the lack of
output following a 'fatal' git error message (see:
https://debbugs.gnu.org/33100).

* guix/build/git.scm (git-fetch): Print message when falling back to a full
fetch.
2018-10-28 22:17:17 -04:00
Ludovic Courtès 63eb2b899b
Add 'guix processes'.
* guix/scripts/processes.scm, tests/processes.scm: New files.
* Makefile.am (MODULES): Add the former.
(SCM_TESTS): Add the latter.
* po/guix/POTFILES.in: Add guix/scripts/processes.scm.
* doc/guix.texi (Invoking guix processes): New node.
(Invoking guix-daemon): Reference it.
2018-10-29 00:13:38 +01:00
Arun Isaac 69b0a847fb
import: hackage: Do not repeat inputs in native-inputs.
* guix/import/hackage.scm (hackage-module->sexp): Do not repeat inputs again
in native-inputs. native-inputs should only contain packages that are not
already listed in inputs.
2018-10-28 13:51:20 +05:30
Ludovic Courtès 932d160056
gexp: 'gexp-modules' now consistently deletes duplicates.
Fixes <https://bugs.gnu.org/32966>.
Reported by Clément Lassieur <clement@lassieur.org>.

* guix/gexp.scm (gexp-attribute): Add 'equal?' optional parameter; pass
it to 'delete-duplicates'.
(gexp-modules)[module=?]: New procedure.
Pass it to 'gexp-attribute'.
* tests/gexp.scm ("gexp-modules deletes duplicates"): New test.
2018-10-27 16:39:29 +02:00
Ludovic Courtès 003789e837
pack: Hide 'zip' colliding binding.
* guix/scripts/pack.scm: Hide 'zip' from (gnu packages compression).
2018-10-27 16:39:29 +02:00
Ludovic Courtès 46727e3a9d
pack: Remove unused variable.
* guix/scripts/pack.scm (self-contained-tarball)[libgcrypt]: Remove.
2018-10-27 16:39:29 +02:00