* gnu/packages/patches/libtiff-uint32-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
* gnu/packages/patches/libtiff-CVE-2016-9297.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
* guix/build/syscalls.scm (ifconf-struct): Remove.
(%ifconf-struct): New C struct.
(network-interface-names): Use 'make-bytevector' and 'write-ifconf!'
instead of 'make-c-struct', and 'read-ifconf' instead of
'parse-c-struct'.
This is a followup to commit 1a87aa7567.
* gnu/packages/gnuzilla.scm (icecat)[sources][patches]: Remove patch for
CVE-2016-5296, which is for a bundled copy of pixman that is
subsequently deleted by a snippet.
Includes fixes for CVE-2016-5290, CVE-2016-5291, CVE-2016-5297, CVE-2016-9064,
and CVE-2016-9066.
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes for
aforementioned CVEs and other selected fixes from Firefox ESR 45.5.0. Note
that the first six patches of CVE-2016-5290 and the patch for CVE-2016-9066
were already present, but were labeled by mozilla bug number instead of CVE.
* gnu/packages/patches/icecat-CVE-2016-9064.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/pixman-CVE-2016-5296.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (pixman)[replacement]: New field.
(pixman/fixed): New variable.
Fixes <http://bugs.gnu.org/22774>.
Reported by Christopher W Carpenter.
* guix/download.scm (built-in-builders*, raw-derivation)
(built-in-download): New procedures.
(in-band-download): New procedure, with code formerly in 'url-fetch'.
(url-fetch): Call 'built-in-builders*' and dispatch between
'built-in-download' and 'in-band-download'.
* tests/lint.scm (%http-server-port, %local-url)
(%http-server-socket, http-write, %http-server-lock)
(%http-server-ready, http-open, stub-http-server)
(call-with-http-server, with-http-server): Move to (guix tests http).
Adjust tests for %HTTP-SERVER-SOCKET as a promise and %LOCAL-URL as a
parameter.
* guix/tests/http.scm: New file.
* Makefile.am (dist_noinst_DATA): Add it.
(GOBJECTS): Add .go files for all of $(dist_noinst_DATA).
(make-go): Depend on $(dist_noinst_DATA).
The Python 2 packages does not change the definition, thus the
propery is useless.
* gnu/packages/python.scm (python-scikit-learn): [properties]:
Remove "python2-variant". (python2-scikit-learn): Remove
now needless "strip-python2-variant".
* gnu/packages/bioinformatics.scm (python2-pbcore) [inputs] change to
[propagated-inputs]. [native-inputs]: Remove python-docutils, which
comes with sphinx. [former propagated-inputs]: move all (which is only
pyxb) to [inputs].
This directory did contain contain wrappers for `nose`, which should not
be there anyway (since nose already was a native-input). The new
python build system no longer creates this directory, while the old one
did. (This difference is due to the bloody details of how packages are
installed.)
* gnu/packages/bioinformatics.scm (python2-warpedlmm)
[modify-phases] Remove, since remove-bin-directory was the only
modification here.
The old one was plain wrong and only worked by luck since the old
python build system did manipulate PYTHONPATH.
* gnu/packages/calendar.scm(khal)[phase manpage]: Use
add-installed-pythonpath.
Unzipping is now done by standard-phase "unpack" automatically.
* gnu/packages/python.scm (python-testlib, python2-testlib)[phases] No longer
replace "unpack".
* gnu/packages/python.scm(python-nautilus, python2-nautilus):
[propagated-inputs] remove python-graphql-core, python-graphql-relay,
python-requests: not listed and already propagated by others. Remove
pycparser: not listed, not used in source. Move python-nose2 to
[native-inputs] (used for tests only).
This is an indirect requirement and propagated by python-sphinx already.
* gnu/packages/python.scm(python-sphinxcontrib-programoutput)
[propagated-inputs]: Remove python-docutils.
This is an indirect requirement and propagated by python-sphinx already.
* gnu/packages/python.scm(python-sphinx-repoze-autointerface)
[propagated-inputs]: Remove python-docutils.
These are indirect requirements and propagated by python-kombu.
* gnu/packages/python.scm(python-celery)[propagated-inputs] Remove python-amqp
and python-anyjson.
Leo Famulari