Commit Graph

27294 Commits

Author SHA1 Message Date
Ben Woodcroft f6e2d86f8e
gnu: seqmagick: Use 'pypi-uri'.
* gnu/packages/bioinformatics.scm (seqmagick)[source]: Use 'pypi-uri'.
2018-01-10 20:16:36 +10:00
Ben Woodcroft 3146f22dec
gnu: mafft: Update to 7.313.
* gnu/packages/bioinformatics.scm (mafft): Update to 7.313.
[source]: Use HTTPS URI.
2018-01-10 20:16:36 +10:00
Leo Famulari d9a38cc255
gnu: syncthing: Update to 0.14.43.
* gnu/packages/syncthing.scm (syncthing): Update to v0.14.43.
2018-01-10 01:29:18 -08:00
Leo Famulari 924d777a34
gnu: Golang X text libraries: Update to 0.0.0-1.e19ae14.
* gnu/packages/syncthing.scm (go-golang-org-x-text-transform,
go-golang-org-x-text-unicode-norm): Update to 0.0.0-1.e19ae14.
2018-01-10 01:22:09 -08:00
Leo Famulari 51bca8bd9a
gnu: Golang X net libraries: Update to 0.0.0-1.d866cfc.
* gnu/packages/syncthing.scm (go-golang-org-x-net-ipv4,
go-golang-org-x-net-bpf, go-golang-org-x-net-context,
go-golang-org-x-net-internal-iana, go-golang-org-x-net-ipv6,
go-golang-org-x-net-proxy): Update to 0.0.0-1.d866cfc.
2018-01-10 01:22:08 -08:00
Leo Famulari f394db42c4
gnu: Golang X crypto libraries: Update to 0.0.0-1.95a4943.
* gnu/packages/syncthing.scm (go-golang-org-x-crypto-bcrypt,
go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea): Update to 0.0.0-1.95a4943.
2018-01-10 01:22:08 -08:00
Leo Famulari a1d1e55cca
gnu: go-github-com-xtaci-smux: Update to 1.0.6-0.c3e1824.
* gnu/packages/syncthing.scm (go-github-com-xtaci-smux): Update to
1.0.6-0.c3e1824.
2018-01-10 01:22:08 -08:00
Leo Famulari d4138c0c67
gnu: go-github-com-tjfoc-gmsm-sm4: Update to 0.0.0-1.98aa888.
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): Update to
0.0.0-1.98aa888.
2018-01-10 01:22:08 -08:00
Leo Famulari 48f677c978
gnu: go-github-com-thejerf-suture: Update to 2.0.1-0.87e298c.
* gnu/packages/syncthing.scm (go-github-com-thejerf-suture): Update to
2.0.1-0.87e298c.
2018-01-10 01:22:07 -08:00
Leo Famulari b39bd1d4e5
gnu: go-github-com-templexxx-xor: Update to 0.1.2.
* gnu/packages/syncthing.scm (go-github-com-templexxx-xor): Update to 0.1.2.
[propagated-inputs]: Add go-github-com-templexxx-cpufeat.
2018-01-10 01:22:07 -08:00
Leo Famulari 54a5a8f101
gnu: go-github-com-templexxx-reedsolomon: Remove unused package.
* gnu/packages/syncthing.scm (go-github-com-templexxx-reedsolomon):
Remove variable.
2018-01-10 01:22:07 -08:00
Leo Famulari 619db5cfeb
gnu: go-github-com-syndtr-goleveldb: Update to 0.0.0-2.34011bf.
* gnu/packages/syncthing.scm (go-github-com-syndtr-goleveldb): Update to
0.0.0-2.34011bf.
2018-01-10 01:22:06 -08:00
Leo Famulari feade866d0
gnu: go-github-com-sasha-s-go-deadlock: Update to 0.1.0-1.03d40e5.
* gnu/packages/syncthing.scm (go-github-com-sasha-s-go-deadlock): Update
to 0.1.0-1.03d40e5.
2018-01-10 01:22:06 -08:00
Leo Famulari d2c7971da3
gnu: go-github-com-rcrowley-go-metrics: Update to 0.0.0-1.e181e09.
* gnu/packages/syncthing.scm (define-public go-github-com-rcrowley-go-metrics):
Update to 0.0.0-1.e181e09.
2018-01-10 01:22:06 -08:00
Leo Famulari 1ad4e366ef
gnu: go-github-com-pkg-errors: Update to 0.0.0-1.e881fd5.
* gnu/packages/syncthing.scm (go-github-com-pkg-errors): Update to
0.0.0-1.e881fd5.
2018-01-10 01:22:06 -08:00
Leo Famulari ac90914159
gnu: go-github-com-oschwald-maxminddb-golang: Update to 1.2.0-0.26fe5ac.
* gnu/packages/syncthing.scm (go-github-com-oschwald-maxminddb-golang):
Update to 1.2.0-0.26fe5ac.
2018-01-10 01:22:05 -08:00
Leo Famulari d277b9bc34
gnu: go-github-com-oschwald-geoip2-golang: Update to 1.1.0.
* gnu/packages/syncthing.scm (go-github-com-oschwald-geoip2-golang):
Update to 1.1.0.
2018-01-10 01:22:05 -08:00
Leo Famulari 5e30d8c1f7
gnu: go-github-com-lib-pq: Update to 0.0.0-1.83612a5.
* gnu/packages/syncthing.scm (go-github-com-lib-pq): Update to
0.0.0-1.83612a5.
2018-01-10 01:22:05 -08:00
Leo Famulari ece4c5bc67
gnu: go-github-com-kardianos-osext: Update to 0.0.0-1.ae77be6.
* gnu/packages/syncthing.scm (go-github-com-kardianos-osext): Update to
0.0.0-1.ae77be6.
2018-01-10 01:22:05 -08:00
Leo Famulari e83994f2b7
gnu: go-github-com-golang-groupcache-lru: Update to 0.0.0-1.84a468c.
* gnu/packages/syncthing.scm (go-github-com-golang-groupcache-lru):
Update to 0.0.0-1.84a468c.
2018-01-10 01:22:04 -08:00
Leo Famulari c1753d6ce1
gnu: go-github-com-gogo-protobuf: Update to 0.5-1.35b81a0.
* gnu/packages/syncthing.scm (go-github-com-gogo-protobuf): Update to
0.5-1.35b81a0.
2018-01-10 01:22:04 -08:00
Leo Famulari e1c815351b
gnu: go-github-com-chmduquesne-rollinghash-adler32: Update to 0.0.0-1.3dc7875.
* gnu/packages/syncthing.scm (go-github-com-chmduquesne-rollinghash-adler32):
Update to 0.0.0-1.3dc7875.
2018-01-10 01:22:03 -08:00
Leo Famulari 3aecf5bd15
gnu: go-golang-org-x-time-rate: Update to 0.0.0-1.6dc1736.
* gnu/packages/syncthing.scm (go-golang-org-x-time-rate): Update to
0.0.0-1.6dc1736.
2018-01-10 01:22:03 -08:00
Leo Famulari 2b4588609b
gnu: go-golang-org-x-sys-unix: Update to 0.0.0-1.8380141.
* gnu/packages/syncthing.scm (go-golang-org-x-sys-unix): Update to
0.0.0-1.8380141.
[arguments]: Adjust the tests to the build environment.
2018-01-10 01:22:03 -08:00
Leo Famulari 27fbcae6d5
gnu: kcp-go: Switch upstream source.
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-kcp-go):
Replace with ...
(go-github-com-xtaci-kcp-go): ... new variable.
2018-01-10 01:22:03 -08:00
Leo Famulari e62d057505
gnu: Add go-github-com-klauspost-reedsolomon.
* gnu/packages/syncthing.scm (go-github-com-klauspost-reedsolomon): New
variable.
2018-01-10 01:22:02 -08:00
Leo Famulari 63aade459d
gnu: Add go-github-com-klauspost-cpuid.
* gnu/packages/syncthing.scm (go-github-com-klauspost-cpuid): New variable.
2018-01-10 01:22:02 -08:00
Leo Famulari b12df4f544
gnu: go-github-com-minio-sha256-simd: Update to 0.0.0-1.ad98a36.
* gnu/packages/syncthing.scm (go-github-com-minio-sha256-simd): Update
to 0.0.0-1.ad98a36.
2018-01-10 01:22:02 -08:00
Leo Famulari 38ea280286
gnu: go-github-com-zillode-notify: Update to 0.0.0-1.8fff849.
* gnu/packages/syncthing.scm (go-github-com-zillode-notify): Update to
0.0.0-1.8fff849.
2018-01-10 01:22:01 -08:00
Tobias Geerinckx-Rice 85afaceb10
gnu: xterm: Update to 331.
* gnu/packages/xorg.scm (xterm): Update to 331.
[arguments]: Remove now-default ‘--enable-256-color’ from #:configure-flags.
now enabled by default.
2018-01-10 02:08:36 +01:00
Tobias Geerinckx-Rice edfa2eee91
gnu: yoshimi: Update to 1.5.6.
* gnu/packages/music.scm (yoshimi): Update to 1.5.6.
[description]: Tweak slightly.
2018-01-10 01:52:26 +01:00
Tobias Geerinckx-Rice 5edc86820f
gnu: yoshimi: Find ncurses with pkg-config.
* gnu/packages/music.scm (yoshimi)[arguments]: Remove obsolete
‘find-ncurses’ phase.
2018-01-10 01:52:26 +01:00
Tobias Geerinckx-Rice 57b05e4a24
gnu: yadifa: Update to 2.3.7.
* gnu/packages/dns.scm (yadifa): Update to 2.3.7.
[arguments]: Add ‘--disable-build-timestamp’ and ‘--enable-acl’ to, and
remove ‘--enable-messages’ from #:configure-flags.
2018-01-10 01:52:25 +01:00
Eric Bavier eb0e51c4c7
gnu: perl-module-pluggable: Fix perms on patch.
* gnu/packages/patches/perl-module-pluggable-search.patch: Remove executable
bit.
2018-01-09 13:44:52 -06:00
Ludovic Courtès 297e04d660
publish: Remove "Guix-Nar-Compression" header from responses.
This was harmless but non-compliant and unnecessary.

* guix/scripts/publish.scm <top level>: Rename "Guix-Nar-Compression" to
"X-Nar-Compression" as should have always been.
(render-nar, nar-response-port): Adjust accordingly.
(strip-headers): New procedure.
(sans-content-length, with-content-length): Use it.
2018-01-09 23:39:02 +01:00
Ludovic Courtès b0de7fdba6
system: Extend .gdbinit to authorize extensions from /gnu/store/*/lib.
* gnu/system/shadow.scm (default-skeletons)["gdbinit"]: Add 'auto-load
safe-path' statement.
2018-01-09 23:39:02 +01:00
Efraim Flashner fa58a0a62e
gnu: libb2: Only check for CPU optimisations on Intel architectures.
* gnu/packages/crypto.scm (libb2)[arguments]: Only pass the
configure-flag '--enable-fat' on i686 or x86_64.
2018-01-09 23:15:09 +02:00
Efraim Flashner 513dc568ca
gnu: iucode-tool: Limit to Intel compatible architectures.
* gnu/packages/linux.scm (iucode-tool)[supported-systems]: New field.
2018-01-09 23:11:57 +02:00
Marius Bakke 68b9be1fd8
gnu: notmuch: Update to 0.26.
* gnu/packages/mail.scm (notmuch): Update to 0.26.
2018-01-09 20:41:10 +01:00
Danny Milosavljevic 16d78a8f72
tests: marionette-operating-system: Add initrd parameter and kernel-arguments.
* gnu/tests.scm (marionette-operating-system): Use initrd parameter "on-error"
and kernel-arguments "panic".
2018-01-09 20:02:26 +01:00
Danny Milosavljevic 20abb8c408
system: Export operating-system-user-kernel-arguments.
* gnu/system.scm (operating-system-user-kernel-arguments): Export it.
2018-01-09 20:02:23 +01:00
Kei Kebreau 1e257d3da9
gnu: behave: Enable tests.
* gnu/packages/check.scm (behave)[native-inputs]: Add python-mock, python-nose
and python-pyhamcrest.
[arguments]: Remove #:tests?.  Add #:test-target.
2018-01-09 11:43:34 -05:00
Kei Kebreau 5b72dafe44
gnu: gnucash: Update to 2.6.19.
* gnu/packages/gnucash.scm (gnucash, gnucash-docs): Update to 2.6.19.
2018-01-09 11:42:51 -05:00
Tobias Geerinckx-Rice 0d92d2ad3d
gnu: tor: Update to 3.2.9.
* gnu/packages/tor.scm (tor): Update to 0.3.2.9.
2018-01-09 16:42:49 +01:00
Tobias Geerinckx-Rice 1e41bb1b65
gnu: geierlein: Use HTTPS for home page.
* gnu/packages/finance.scm (geierlein)[home-page]: Use HTTPS.
2018-01-09 16:42:49 +01:00
Tobias Geerinckx-Rice 1c21e734f4
gnu: geierlein: Update to 0.9.13.
* gnu/packages/finance.scm (geierlein): Update to 0.9.13.
2018-01-09 16:42:48 +01:00
Tobias Geerinckx-Rice 6c0b088740
gnu: libsrtp: Mark up description.
* gnu/packages/telephony.scm (libsrtp)[description]: Use @dfn.
2018-01-09 16:41:52 +01:00
Tobias Geerinckx-Rice b0c7e053d8
gnu: libsrtp: Update to 1.6.0.
* gnu/packages/telephony.scm (libsrtp): Update to 1.6.0.  Re-indent.
2018-01-09 16:41:51 +01:00
Ben Woodcroft 39fb853abe
gnu: seqmagick: Update to 0.7.0.
* gnu/packages/bioinformatics.scm (seqmagick): Update to 0.7.0.  Use
python-3.
[arguments]: Remove replacement phase for check.
[inputs]: Add biopython.  Remove python2-biopython-1.66.
(python2-biopython-1.66): Remove variable.
2018-01-09 22:39:05 +10:00
Eric Bavier 5424f9bcab
gnu: ledger: Fix test failures.
* gnu/packages/patches/ledger-revert-boost-python-fix.patch,
gnu/packages/patches/ledger-fix-uninitialized.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/finance.scm (ledger)[source]: Use them.
2018-01-08 16:03:55 -06:00