* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.0.
[source]: Convert most operations in the snippet to patch form and adjust
for 2.4.0.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Fixes <https://bugs.gnu.org/25635>.
Reported by Sergei Trofimovich <slyfox@inbox.ru>.
* guix/import/pypi.scm (guix-package->pypi-name)[url->pypi-name]: New
procedure.
Rewrite body to match lists in addition to strings.
* tests/pypi.scm ("guix-package->pypi-name, several URLs"): New test.
This fixes a bug whereby names of files defining services would be
invalid if 'provisions' contained more than one element.
* gnu/services/shepherd.scm (shepherd-service-file-name): Update
'match-lambda' accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Gtk+3 now have multiple outputs, so the gtk-query-immodules-3.0 should be find
in output "bin" instead of "out".
* guix/profiles.scm (gtk-im-modules): Pass the path of gtk-query-immodules-x.x
as 'query' argument to the 'build' procedure.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
This is a follow-up to commit de643f0c15.
* gnu/packages/statistics.scm (r)[arguments]: Set the built timestamp for core
packages to the epoch; add phase "build-recommended-packages-reproducibly".
* gnu/packages/fonts.scm (font-wqy-microhei, font-google-roboto)[arguments]:
Substitute the simpler INSTALL-FILE for every COPY-FILE invoked with redundant
arguments.
Reported by rohit yadav <rohityadav@utexas.edu>
at <https://lists.gnu.org/archive/html/guix-devel/2017-02/msg00191.html>.
This fixes a regression whereby 'guix perform-download' would always see
NIX_STORE as unset and thus use "/gnu/store", leading it to miscompute
the hydra.gnu.org content-addressed URLs when the store file name is not
"/gnu/store".
* nix/libstore/builtins.cc (builtinDownload): Add 'setenv' call for
'NIX_STORE'.
Fixes a regression introduced in
d846834fc2 where '--with-platform=efi'
would no longer be passed.
* gnu/packages/grub.scm (grub-efi)[arguments]: Provide a default value
for #:configure-flags.
* gnu/services/networking.scm (bitlbee-shepherd-service): Wrap in
'with-imported-modules' and add 'modules' field. Use
'make-forkexec-constructor/container' and pass #:mappings.
* gnu/build/linux-container.scm (container-excursion*): New procedure.
* tests/containers.scm ("container-excursion*")
("container-excursion*, same namespaces"): New tests.
Reported by a couple of cool folks at a bar in Brussels.
* etc/completion/bash/guix (_guix_complete): Use '_guix_complete_file'
for 'guix gc'. This fixes completion of 'guix gc -d'.
The problem is seen when we try to use explicit host:
./configure --prefix=/usr --localstatedir=/var/lib --host=x86_64-pc-linux-gnu
make V=1
Before the change:
ar cru libstore.a nix/libstore/libstore_a-gc.o
After the change:
x86_64-pc-linux-gnu-ar cru libstore.a
* config-daemon.ac: use AM_PROG_AR to detect host AR
Signed-off-by: Sergei Trofimovich <slyfox@inbox.ru>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This avoids problems where 'isatty?' return #t but 'ttyname' fails with
ENOTTY or such.
* gnu/build/linux-container.scm (mount-file-systems): Remove call of
'isatty?'. Directly call 'ttyname' and catch 'system-error'.
Ben Woodcroft