8671d1e9d6
gnu: r-summarizedexperiment: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.0.
2019-05-06 00:14:34 +02:00
14561bb9e7
gnu: r-delayedarray: Update to 0.10.0.
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* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.10.0.
[propagated-inputs]: Add r-matrix.
2019-05-06 00:14:34 +02:00
d2e165496b
gnu: r-biostrings: Update to 2.52.0.
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* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.52.0.
2019-05-06 00:14:33 +02:00
e10b67c797
gnu: r-biocparallel: Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.0.
2019-05-06 00:14:33 +02:00
933571ddcd
gnu: r-biomart: Update to 2.40.0.
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* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.0.
2019-05-06 00:14:33 +02:00
a1b9378a8e
gnu: r-annotationdbi: Update to 1.46.0.
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* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.46.0.
2019-05-06 00:14:33 +02:00
4aadfcd296
gnu: r-biobase: Update to 2.44.0.
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* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.44.0.
2019-05-06 00:14:33 +02:00
b35bc56a8a
gnu: r-genomicranges: Update to 1.36.0.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.0.
2019-05-06 00:14:33 +02:00
bc0e5bc12e
gnu: r-xvector: Update to 0.24.0.
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* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.24.0.
2019-05-06 00:14:32 +02:00
5fadf39280
gnu: r-limma: Update to 3.40.0.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.0.
2019-05-06 00:14:32 +02:00
0d094ad9ab
gnu: r-variantannotation: Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.0.
[propagated-inputs]: Add r-rhtslib.
2019-05-06 00:14:32 +02:00
1e3f53a489
gnu: r-edger: Update to 3.26.0.
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* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.0.
2019-05-06 00:14:32 +02:00
6dc05d0a86
gnu: r-genomeinfodb: Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.20.0.
2019-05-06 00:14:32 +02:00
38142114b7
gnu: r-iranges: Update to 2.18.0.
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* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.0.
2019-05-06 00:14:32 +02:00
192ddab3e5
gnu: r-s4vectors: Update to 0.22.0.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.0.
2019-05-06 00:14:31 +02:00
8bdf7d55be
gnu: r-bioccheck: Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.20.0.
2019-05-06 00:14:31 +02:00
e01b72d225
gnu: r-biocstyle: Update to 2.12.0.
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* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.12.0.
2019-05-06 00:14:31 +02:00
440af6482a
gnu: r-biocviews: Update to 1.52.0.
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* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.0.
2019-05-06 00:14:31 +02:00
ce52cab000
gnu: r-grohmm: Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.18.0.
2019-05-06 00:14:31 +02:00
49f30903f0
gnu: r-shortread: Update to 1.42.0.
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* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.42.0.
2019-05-06 00:14:31 +02:00
fe40f55094
gnu: r-gostats: Update to 2.50.0.
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* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.50.0.
2019-05-06 00:14:30 +02:00
4d88dbe6eb
gnu: r-category: Update to 2.50.0.
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* gnu/packages/bioinformatics.scm (r-category): Update to 2.50.0.
2019-05-06 00:14:30 +02:00
08d2a26d47
gnu: r-gseabase: Update to 1.46.0.
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* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.46.0.
2019-05-06 00:14:30 +02:00
aa51a241c5
gnu: r-rbgl: Update to 1.60.0.
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* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.60.0.
[propagated-inputs]: Add r-bh.
2019-05-06 00:14:30 +02:00
7f737246d8
gnu: r-annotationforge: Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.26.0.
2019-05-06 00:14:30 +02:00
0a58282de7
gnu: r-dexseq: Update to 1.30.0.
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* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.30.0.
2019-05-06 00:14:30 +02:00
9a39193d45
gnu: r-deseq2: Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.24.0.
2019-05-06 00:14:30 +02:00
0183163d1e
gnu: r-genefilter: Update to 1.66.0.
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* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.66.0.
2019-05-06 00:14:29 +02:00
295f35dfb9
gnu: r-preprocesscore: Update to 1.46.0.
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* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.46.0.
2019-05-06 00:14:29 +02:00
52b4703c08
gnu: r-rgraphviz: Update to 2.28.0.
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* gnu/packages/graph.scm (r-rgraphviz): Update to 2.28.0.
2019-05-06 00:14:29 +02:00
3b13b6d777
gnu: r-units: Update to 0.6-3.
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* gnu/packages/cran.scm (r-units): Update to 0.6-3.
2019-05-06 00:14:29 +02:00
3961b3b900
gnu: Add r-dqrng.
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* gnu/packages/cran.scm (r-dqrng): New variable.
2019-05-06 00:14:29 +02:00
b8d6dffbdd
gnu: Add r-sitmo.
...
* gnu/packages/cran.scm (r-sitmo): New variable.
2019-05-06 00:14:29 +02:00
0c8960df13
gnu: Add r-clue.
...
* gnu/packages/cran.scm (r-clue): New variable.
2019-05-06 00:14:29 +02:00
be23c491cb
gnu: Add r-batchtools.
...
* gnu/packages/cran.scm (r-batchtools): New variable.
2019-05-06 00:14:28 +02:00
04bf86ba9f
gnu: Add r-blme.
...
* gnu/packages/cran.scm (r-blme): New variable.
2019-05-06 00:14:28 +02:00
2b9d4f5866
gnu: Add r-scrime.
...
* gnu/packages/cran.scm (r-scrime): New variable.
2019-05-06 00:14:28 +02:00
78735b9f34
gnu: Add r-grimport2.
...
* gnu/packages/cran.scm (r-grimport2): New variable.
2019-05-06 00:14:28 +02:00
8128189976
gnu: Add r-rcpphnsw.
...
* gnu/packages/cran.scm (r-rcpphnsw): New variable.
2019-05-06 00:14:28 +02:00
993912905d
gnu: Add r-biocsingular.
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* gnu/packages/bioconductor.scm (r-biocsingular): New variable.
2019-05-06 00:14:28 +02:00
72032c9d5f
gnu: Add r-base64url.
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* gnu/packages/cran.scm (r-base64url): New variable.
2019-05-06 00:14:27 +02:00
dcfa0acd7b
Correct email and license info for Brendan Tildesley.
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* gnu/packages/audio.scm: Correct email and license info.
* gnu/packages/ebook.scm: Correct email and license info.
* gnu/packages/fonts.scm: Correct email and license info.
* gnu/packages/freedesktop.scm: Correct email and license info.
* gnu/packages/gnome.scm: Correct email and license info.
* gnu/packages/linux.scm: Correct email and license info.
* gnu/packages/lxde.scm: Correct email and license info.
* gnu/packages/python-web.scm: Correct email and license info.
* gnu/packages/python-xyz.scm: Correct email and license info.
* gnu/packages/python.scm: Correct email and license info.
* gnu/packages/video.scm: Correct email and license info.
* gnu/packages/web.scm: Correct email and license info.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 17:16:51 +02:00
ee3ce0d71d
gnu: calibre: Update to 3.42.0.
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* gnu/packages/ebook.scm (calibre): Update to 3.42.0.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
421c5e92f9
gnu: calibre: Shorten long line.
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* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Shorten long line.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
d6dfe8b634
gnu: calibre: Install man pages.
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* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[install-man-pages]:
New phase.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
f3f017dbf0
gnu: calibre: Delete various junk from source.
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* gnu/packages/ebook.scm (calibre)[source](snippet): Delete various junk from
source.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
62a97dc0fb
gnu: calibre: Remove libxrender as an input.
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* gnu/packages/ebook.scm (calibre)[inputs]: Remove libxrender.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
68435a7f55
gnu: calibre: Unbundle python2-odfpy.
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* gnu/packages/ebook.scm (calibre)[snippet]: Remove all of src/odf.
[inputs]: Add python2-odfpy.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
7312a7d073
gnu: calibre: Remove some comments.
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* gnu/packages/ebook.scm (calibre): There is no unrar in Guix currently, and
pdftohtml is in poppler, so we can remove this comment.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
eb5f620134
gnu: calibre: Enable tests.
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* gnu/packages/ebook.scm (calibre): Enable tests.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Ricardo Wurmus