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4216 Commits (868ef9aec79fac92efbe885120331310592fef98)

Author SHA1 Message Date
Ricardo Wurmus dbf4ed7c91 gnu: Add subread. 
* gnu/packages/bioinformatics.scm (subread): New variable.
 2015-04-21 10:46:23 +02:00
Ludovic Courtès 3392ce5d60 system: Make /gnu/store a read-only bind mount by default. 
* gnu/system/file-systems.scm (%immutable-store): New variable.
  (%base-file-systems): Add it.
* doc/guix.texi (File Systems): Document it.
 2015-04-20 22:21:51 +02:00
Ludovic Courtès b86fee7848 file-systems: Use a second 'mount' call for read-only bind mounts. 
* gnu/build/file-systems.scm (MS_REMOUNT): New constant.
  (mount-file-system): Add 'flags' local variable.   When FLAGS has
  MS_BIND & MS_RDONLY, call 'mount' with MS_REMOUNT.
* gnu/services/base.scm (file-system-service) <start>: Likewise.
 2015-04-20 22:16:13 +02:00
Ludovic Courtès 38cf2ba084 gnu: Remove all #:select from (gnu packages ...) modules. 
This works around Guile bug <http://bugs.gnu.org/15540>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages/engineering.scm: Don't #:select from (gnu packages ...).
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/moe.scm: Likewise, and #:select from (guix licenses)
  instead.
 2015-04-20 15:50:59 +02:00
Ricardo Wurmus 51c649992e gnu: Add sra-tools. 
* gnu/packages/bioinformatics.scm (sra-tools): New variable.
 2015-04-20 15:29:17 +02:00
Ricardo Wurmus 75dd242480 gnu: Add NCBI VDB. 
* gnu/packages/bioinformatics.scm (ncbi-vdb): New variable.
 2015-04-20 15:29:17 +02:00
Ricardo Wurmus 2651a5e695 gnu: Add NGS Java bindings. 
* gnu/packages/bioinformatics.scm (ngs-java): New variable.
 2015-04-20 15:29:16 +02:00
Ricardo Wurmus 282c5087b4 gnu: Add NGS SDK. 
* gnu/packages/bioinformatics.scm (ngs-sdk): New variable.
 2015-04-20 15:28:58 +02:00
Ricardo Wurmus 85c37e29a4 gnu: Add Biopython. 
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New
  variables.
 2015-04-20 15:23:23 +02:00
Eric Bavier 40b084a326 gnu: Adjust latest perl modules to new 'modify-phases' syntax. 
* gnu/packages/compression.scm (perl-compress-raw-zlib)[arguments]:
  Add missing quotes, as needed since commit f8503e2.
* gnu/packages/perl.scm (perl-ipc-run)[arguments]: Likewise.
* gnu/packages/xml.scm (perl-xml-sax)[arguments]: Likewise.
 2015-04-19 21:39:32 -05:00
宋文武 61c21ad319 gnu: Add WebKitGTK+. 
* gnu/packages/webkit.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-04-20 10:34:24 +08:00
Eric Bavier 97b05abe6d gnu: Add JSON-Any. 
* gnu/packages/perl.scm (perl-json-any): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier ae6904dc0b gnu: nix: Propagate perl inputs. 
* gnu/packages/package-management.scm (nix)[inputs]: Move
  perl-www-curl, perl-dbi, perl-dbd-sqlite to...
  [propagated-inputs]: ...this new field
 2015-04-19 19:48:52 -05:00
Eric Bavier 8ac84f230c gnu: Add Sys-Hostname-Long. 
* gnu/packages/perl.scm (perl-sys-hostname-long): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier 10ef803e7d gnu: Add Text-Table. 
* gnu/packages/perl.scm (perl-text-table): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier 7ae9557181 gnu: Add Text-Aligner. 
* gnu/packages/perl.scm (perl-text-aligner): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier f21671f469 gnu: Add Set-Scalar. 
* gnu/packages/perl.scm (perl-set-scalar): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier b4dcb026d6 gnu: Add SQL-SplitStatement. 
* gnu/packages/databases.scm (perl-sql-splitstatement): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier 718c89c1a1 gnu: Add SQL-Tokenizer. 
* gnu/packages/databases.scm (perl-sql-tokenizer): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier 8ce2312875 gnu: Add Perl Readonly. 
* gnu/packages/perl.scm (perl-readonly): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 38e62c81ee gnu: Add Perl Net-Amazon-S3. 
* gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-net-amazon-s3): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 3dd6bee1f2 gnu: Add XML-LibXML. 
* gnu/packages/xml.scm (perl-xml-libxml): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 18b8bbb304 gnu: Add XML-SAX; 
* gnu/packages/xml.scm (perl-xml-sax): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 1ed6d5bc86 gnu: Add XML-SAX-Base. 
* gnu/packages/xml.scm (perl-xml-sax-base): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier b715dbac7b gnu: Add XML-NamespaceSupport. 
* gnu/packages/xml.scm (perl-xml-namespacesupport): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 0955342bf7 gnu: Add Term-ProgressBar-Simple. 
* gnu/packages/perl.scm (perl-term-progressbar-simple): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 0d54bd259c gnu: Add Term-ProgressBar-Quiet. 
* gnu/packages/perl.scm (perl-term-progressbar-quiet): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 4dbac597eb gnu: Add Test-MockObject. 
* gnu/packages/perl.scm (perl-test-mockobject): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 7332618df3 gnu: Add UNIVERSAL-isa. 
* gnu/packages/perl.scm (perl-universal-isa): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier f9671ab689 gnu: Add UNIVERSAL-can. 
* gnu/packages/perl.scm (perl-universal-can): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier cc307bda85 gnu: Add Term-ProgressBar. 
* gnu/packages/perl.scm (perl-term-progressbar): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 70fe0008f7 gnu: Add TermReadKey. 
* gnu/packages/perl.scm (perl-term-readkey): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier cd718b8201 gnu: Add Class-MethodMaker. 
* gnu/packages/perl.scm (perl-class-methodmaker): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 56da2a1abd gnu: Add IO-Interactive. 
* gnu/packages/perl.scm (perl-io-interactive): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 257fa40b23 gnu: Add Term-Encoding. 
* gnu/packages/perl.scm (perl-term-encoding): New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier d2401db9ff gnu: Add MooseX-Types-DateTime-MoreCoercions. 
* gnu/packages/perl.scm (perl-moosex-types-datetime-morecoercions):
  New variable.
 2015-04-19 19:48:51 -05:00
Eric Bavier 4f43da182b gnu: Add Time-Duration-Parse. 
* gnu/packages/perl.scm (perl-time-duration-parse): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier a15145d93b gnu: Add Time-Duration. 
* gnu/packages/perl.scm (perl-time-duration): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier bbe81cc0dd gnu: Add Test-Pod-Coverage. 
* gnu/packages/perl.scm (perl-test-pod-coverage): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier 29fda459a6 gnu: Add Pod-Coverage. 
* gnu/packages/perl.scm (perl-pod-coverage): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier 7300092693 gnu: Add Devel-Symdump. 
* gnu/packages/perl.scm (perl-devel-symdump): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier 3e7a86cdc5 gnu: Add MooseX-Types-DateTime. 
* gnu/packages/perl.scm (perl-moosex-types-datetime): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier ef96132220 gnu: Add DateTimeX-Easy. 
* gnu/packages/perl.scm (perl-datetimex-easy): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier 69d2261f77 gnu: Add DateTime-Format-Natural. 
* gnu/packages/perl.scm (perl-datetime-format-natural): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier 55069500a2 gnu: Add Module-Util. 
* gnu/packages/perl.scm (perl-module-util): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier 59f423214e gnu: Add Date-Calc. 
* gnu/packages/perl.scm (perl-date-calc, perl-date-calc-xs): New
  variables.
 2015-04-19 19:48:50 -05:00
Eric Bavier bb90ae0cb0 gnu: Add Bit-Vector. 
* gnu/packages/perl.scm (perl-bit-vector): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier 85690ec144 gnu: Add Perl boolean. 
* gnu/packages/perl.scm (perl-boolean): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier e58a2fa16e gnu: Add DateTime-Format-ICal. 
* gnu/packages/perl.scm (perl-datetime-format-ical): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier 21c9adcca6 gnu: Add DateTime-Event-ICal. 
* gnu/packages/perl.scm (perl-datetime-event-ical): New variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier 47e049c446 gnu: Add DateTime-Event-Recurrence. 
* gnu/packages/perl.scm (perl-datetime-event-recurrence): New
  variable.
 2015-04-19 19:48:50 -05:00
Eric Bavier f89fe3bff7 gnu: Add DateTime-Set. 
* gnu/packages/perl.scm (perl-datetime-set): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier 23c2836041 gnu: Add Set-Infinite. 
* gnu/packages/perl.scm (perl-set-infinite): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier b271f727f0 gnu: Add DateTime-Format-Flexible. 
* gnu/packages/perl.scm (perl-datetime-format-flexible): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier 3dcfec09c3 gnu: Add DateTime-Format-Builder. 
* gnu/packages/perl.scm (perl-datetime-format-builder): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier 6f170fe596 gnu: Add DateTime-Format-Strptime. 
* gnu/packages/perl.scm (perl-datetime-format-strptime): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier bd44b05dca gnu: Add Class-Factory-Util. 
* gnu/packages/perl.scm (perl-class-factory-util): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier 4be514cb47 gnu: Add MooseX-StrictConstructor. 
* gnu/packages/perl.scm (perl-moosex-strictconstructor): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier 6a58b09280 gnu: Add LWP-UserAgent-Determined. 
* gnu/packages/web.scm (perl-lwp-useragent-determined): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier 0a24e9b887 gnu: Add Digest-MD5-File. 
* gnu/packages/web.scm (perl-digest-md5-file): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier 31170d1390 gnu: Add Digest-HMAC. 
* gnu/packages/perl.scm (perl-digest-hmac): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier 9151712c55 gnu: Add DateTime-Format-HTTP. 
* gnu/packages/web.scm (perl-datetime-format-http): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier 1cebf8736e gnu: Add Data-Stream-Bulk. 
* gnu/packages/perl.scm (perl-data-stream-bulk): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier bdcfd18e4b gnu: Add LWP-Protocol-https. 
* gnu/packages/web.scm (perl-lwp-protocol-https): New variable.
 2015-04-19 19:48:49 -05:00
Eric Bavier bec820d94a gnu: libwww-perl: Update to 6.13. 
* gnu/packages/web.scm (perl-libwww)[version]: Update to 6.13.
  [source]: Adjust uri.
  [home-page]: Point to generic distribution page.
 2015-04-19 19:48:49 -05:00
Eric Bavier 0eb3b5bdf1 gnu: Net-HTTP: Update to 6.07. 
* gnu/packages/web.scm (perl-net-http)[version]: Update to 6.07.
  [source]: Adjust uri.
  [propagated-inputs]: New field.
  [home-page]: Point to generic distribution page.
 2015-04-19 19:48:49 -05:00
Eric Bavier e3d84c4e3a gnu: Add IPC-Run. 
* gnu/packages/perl.scm (perl-ipc-run): New variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier 8aaafd34c8 gnu: Add IO-Compress. 
* gnu/packages/compression.scm (perl-io-compress): New variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier 8e18514a69 gnu: Add Compress-Raw-Zlib. 
* gnu/packages/compression.scm (perl-compress-raw-zlib): New variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier 73f542c368 gnu: Add Compress-Raw-Bzip2. 
* gnu/packages/compression.scm (perl-compress-raw-bzip2): New
  variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier 38973df746 gnu: Add File-Slurp. 
* gnu/packages/perl.scm (perl-file-slurp): New variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier a24c54201d gnu: Add Email-Sender. 
* gnu/packages/mail.scm (perl-email-sender): New variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier 0677b1af3b gnu: Add Throwable. 
* gnu/packages/perl.scm (perl-throwable): New variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier 70de16eaf4 gnu: Add MooX-Types-MooseLike. 
* gnu/packages/perl.scm (perl-moox-types-mooselike): New variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier 26b8de1963 gnu: Add Email-Abstract. 
* gnu/packages/mail.scm (perl-email-abstract): New variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier 0a4c49f613 gnu: Add Email-MIME. 
* gnu/packages/mail.scm (perl-email-mime): New variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier 151ef3edc3 gnu: Add Email-Simple. 
* gnu/packages/mail.scm (perl-email-simple): New variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier aa86a3be20 gnu: Add Email-Date-Format. 
* gnu/packages/mail.scm (perl-email-date-format): New variable.
 2015-04-19 19:48:48 -05:00
Eric Bavier 02e2993607 gnu: Add Email-MIME-Encodings. 
* gnu/packages/mail.scm (perl-email-mime-encodings): New variable.
 2015-04-19 19:48:47 -05:00
Eric Bavier 55025bb516 gnu: Add Email-MIME-ContentType. 
* gnu/packages/mail.scm (perl-email-mime-contenttype): New variable.
 2015-04-19 19:48:47 -05:00
Eric Bavier 08bf70953f gnu: Add Email-MessageID. 
* gnu/packages/mail.scm (perl-email-messageid): New variable.
 2015-04-19 19:48:47 -05:00
Eric Bavier ebda902fb5 gnu: Add Email-Address. 
* gnu/packages/mail.scm (perl-email-address): New variable.
 2015-04-19 19:48:47 -05:00
Eric Bavier e3cfe3d6d1 gnu: Move perl-mime-types to (gnu packages perl). 
* gnu/packages/web.scm (perl-mime-types): Move this...
* gnu/packages/perl.scm (perl-mime-types): ... to here.
 2015-04-19 19:48:47 -05:00
Eric Bavier 186eb13248 gnu: add DBD-Pg. 
* gnu/packages/databases.scm (perl-dbd-pg): New variable.
 2015-04-19 19:48:47 -05:00
Eric Bavier 19c0e5a728 gnu: Add Crypt-RandPasswd. 
* gnu/packages/perl.scm (perl-crypt-randpasswd): New variable.
 2015-04-19 19:48:47 -05:00
Eric Bavier ca8e61960a gnu: Add CatalystX-Script-Server-Starman. 
* gnu/packages/web.scm (perl-catalystx-script-server-starman): New
  variable.
 2015-04-19 19:48:47 -05:00
Eric Bavier a641b5791a gnu: Add Starman. 
* gnu/packages/web.scm (starman): New variable.
 2015-04-19 19:48:47 -05:00
Eric Bavier be22d5fc63 gnu: Add Net-Server. 
* gnu/packages/web.scm (perl-net-server): New variable.
 2015-04-19 19:48:47 -05:00
Eric Bavier 8ab39c2d26 gnu: Add HTTP-Parser-XS. 
* gnu/packages/web.scm (perl-http-parser-xs): New variable.
 2015-04-19 19:48:47 -05:00
Eric Bavier d3182b42a0 gnu: Add HTTP-Parser. 
* gnu/packages/web.scm (perl-http-parser): New variable.
 2015-04-19 19:48:47 -05:00
Eric Bavier 5c2c9ab2f8 gnu: Add Catalyst-View-TT. 
* gnu/packages/web.scm (perl-catalyst-view-tt): New variable.
 2015-04-19 19:48:46 -05:00
Eric Bavier 9e4a022bda gnu: Add Template-Timer. 
* gnu/packages/perl.scm (perl-template-timer): New variable.
 2015-04-19 19:48:46 -05:00
Ludovic Courtès b16b77905c gnu: bash-completion: Remove completions redundant with those of util-linux. 
* gnu/packages/bash.scm (bash-completion)[arguments]: New field.
 2015-04-19 23:34:53 +02:00
Ludovic Courtès 07c0b6e082 gnu: ld-wrapper2: Make 'readlink*' tail-recursive. 
* gnu/packages/ld-wrapper2.in (readlink*): Make tail-recursive.
 2015-04-19 23:34:53 +02:00
Mark H Weaver 42f118010b gnu: ccl: Fix inputs on non-Intel platforms. 
* gnu/packages/lisp.scm (ccl)[inputs]: Add default cases in 'match' forms.
  Fix pattern in "armhf-linux" case of sha256 field.
 2015-04-19 10:15:04 -04:00
Andy Wingo ec2b19210f gnu: gnome-settings-daemon: Use wacom packages. 
* gnu/packages/gnome.scm (gnome-settings-daemon): Use the wacom packages.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-04-18 22:57:52 +02:00
Andy Wingo ab42a2a727 gnu: Add xf86-input-wacom. 
* gnu/packages/xdisorg.scm (xf86-input-wacom): New variable.
 2015-04-18 22:57:52 +02:00
Andy Wingo f1f7049ec1 gnu: Add libwacom. 
* gnu/packages/xdisorg.scm (libwacom): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-04-18 22:57:52 +02:00
Ludovic Courtès 724311a26b packages: Allow package lookups with version prefixes. 
* gnu/packages.scm (find-packages-by-name): Sort MATCHING according to
  'version>?'.  Use 'string-prefix?' instead of 'string=?' to compare
  against VERSION.
* doc/guix.texi (Invoking guix package): Add example and explanation.
 2015-04-18 22:57:52 +02:00
Andreas Enge e7bf0e4465 gnu: ucommon: Update to 6.3.1. 
* gnu/packages/telephony.scm (ucommon): Update to 6.3.1.
 2015-04-18 21:20:31 +02:00
Andreas Enge 9dc9053f1d gnu: ccrtp: Update to 2.1.2. 
* gnu/packages/telephony.scm (ccrtp): Update to 2.1.2.
 2015-04-18 21:19:32 +02:00
Andreas Enge 936e86bdae gnu: sipwitch: Update to 1.9.7. 
* gnu/packages/telephony.scm (sipwitch): Update to 1.9.7.
 2015-04-18 20:20:57 +02:00
Andreas Enge 24ba72402b gnu: nano: Update to 2.4.1. 
* gnu/packages/nano.scm (nano): Update to 2.4.1.
 2015-04-18 20:16:57 +02:00
Andreas Enge 3434a65ba1 gnu: calibre: Update to 2.25.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.25.0.
 2015-04-18 20:04:53 +02:00
宋文武 7763174509 gnu: Add MariaDB. 
* gnu/packages/databases.scm (mariadb): New variable.
 2015-04-18 21:52:14 +08:00
宋文武 01ccdfb6d3 gnu: Add libaio. 
* gnu/packages/linux.scm (libaio): New variable.
 2015-04-18 21:52:14 +08:00
宋文武 82d8729b24 gnu: Add jemalloc. 
* gnu/packages/jemalloc.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-04-18 21:52:14 +08:00
宋文武 40f6f76ed1 gnu: gst-plugins-good: Add more inputs and remove unneeded ones. 
* gnu/packages/gstreamer.scm (gst-plugins-good): Move gst-plugins-base
  from 'native-inputs' to 'inputs'.
  [inputs]: Add aalib, jack, libavc1394, libcaca, libdv, libiec61833,
  libshout, libsoup, libvpx, orc, taglib and wavpack.  Remove glib,
  gstreamer, libogg, libx11, libxext, libxv, and zlib.
  [arguments]: Remove.
 2015-04-18 17:34:58 +08:00
Mark H Weaver 989a9fffa7 gnu: ntp: Update to 4.2.8p2. 
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p2.
 2015-04-18 02:28:30 -04:00
Mark H Weaver ba42f54df6 gnu: tor: Update to 0.2.5.12. 
* gnu/packages/tor.scm (tor): Update to 0.2.5.12.
 2015-04-18 02:28:30 -04:00
Andreas Enge 09dd019490 gnu: ffmpeg: Drop old version 2.2. 
* gnu/packages/video.scm (ffmpeg-2.2): Remove variable.
  (ffmpeg)[arguments]: Drop LDFLAGS environment variable needed only for
  older versions.
 2015-04-17 20:54:47 +02:00
Mark H Weaver db5127d889 gnu: gnome-vfs: Tolerate 'test-async-cancel' failures, take two. 
* gnu/packages/gnome.scm (gnome-vfs)[arguments]: Remove 'XFAIL_TESTS' make
  flag, which caused 'make check' to fail if the test unexpectedly passed.
  Add 'patch-test-async-cancel-to-never-fail' phase.
 2015-04-17 11:40:34 -04:00
Mark H Weaver 933204e5b1 Merge branch 'master' into core-updates 
Conflicts:
	gnu-system.am
	gnu/packages/gstreamer.scm
 2015-04-17 09:54:11 -04:00
Ludovic Courtès 5e25ebe2fa services: Explicitly refer to Shadow when requiring the 'nologin' shell. 
* gnu/services/avahi.scm (avahi-service): Change 'shell' to a gexp
  referring to "nologin" in the SHADOW package.
* gnu/services/dbus.scm (dbus-service): Likewise.
* gnu/services/networking.scm (ntp-service, tor-service): Likewise.
 2015-04-17 13:53:16 +02:00
Ludovic Courtès 8e974b9b98 system: Populate /etc/shells with the list of all the shells in use. 
Reported by Andy Wingo <wingo@pobox.com>.

* gnu/system.scm (user-shells, shells-file): New procedures.
  (etc-directory): Add #:shell parameter.  Use 'shells-file' instead of
  'text-file'.
  (operating-system-etc-directory): Call 'user-shells' and pass #:shells
  to 'etc-directory'.
 2015-04-17 13:53:16 +02:00
David Hashe 3c9e35cce7 gnu: Add libsrtp. 
* gnu/packages/telephony.scm (libsrtp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-04-17 13:53:16 +02:00
Mark H Weaver 9128e323c0 gnu: icecat: Use system sqlite. 
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Add sqlite.
  [arguments]: Pass "--enable-system-sqlite" to configure.
 2015-04-17 03:12:48 -04:00
Mark H Weaver 9e12bc3493 gnu: gnome-vfs: Expect 'test-async-cancel' failure, and clean up. 
* gnu/packages/gnome.scm (gnome-vfs)[arguments]: Add
  "XFAIL_TESTS=test-async-cancel" to make flags.  Remove ignored and
  undocumented 'DISABLE_DEPRECATED_CFLAGS' configure flag.  Simplify
  'ignore-deprecations' phase and return #t.  Reformat to fit within
  80 columns.
 2015-04-17 03:11:52 -04:00
Jason Self 007aa90b21 gnu: linux-libre: Set CONFIG_DEVMEM=y 
* gnu/packages/linux.scm (linux-libre): Set CONFIG_DEVMEM=y.

Signed-off-by: Jason Self <j@jxself.org>
 2015-04-17 02:05:11 -04:00
Ludovic Courtès 77db91addc gnu: Add second ld-wrapper to work around readlink dereferencing bug. 
Suggested by Mark H Weaver.

* gnu/packages/ld-wrapper2.in: New file.
* gnu-system.am (MISC_DISTRO_FILES): Add it.
* gnu/packages/commencement.scm (fixed-ld-wrapper): New procedure.
 2015-04-16 23:15:06 +02:00
Ludovic Courtès f0ad3c7697 gnu: bigloo: Add RUNPATH to the libraries. 
* gnu/packages/scheme.scm (bigloo)[arguments]: Pass --ldflags
  'configure' flag.
 2015-04-16 23:15:06 +02:00
Manolis Ragkousis d67513fa05 gnu: mig: Update to 1.5 
* gnu/packages/hurd.scm (mig): Update to version 1.5.
 2015-04-16 14:13:23 +03:00
Manolis Ragkousis 41d9c5d39a gnu: hurd-headers: Update to 0.6 
* gnu/packages/hurd.scm (hurd-headers): Update to version 0.6.
 2015-04-16 14:13:17 +03:00
Manolis Ragkousis 78dc44908e gnu: gnumach-headers: Update to 1.5 
* gnu/packages/hurd.scm (gnumach-headers): Update to version 1.5.
 2015-04-16 14:13:11 +03:00
Andreas Enge 1a189da0e7 gnu: vlc: Update to 2.2.0. 
* gnu/packages/video.scm (vlc): Update to 2.2.0.
  [inputs]: Switch from ffmpeg-2.2 to latest one.
 2015-04-16 13:11:24 +02:00
Ludovic Courtès 457e528eb9 gnu: ffmpeg: Allow tests to run from the build tree. 
* gnu/packages/video.scm (ffmpeg)[arguments]: Add 'set-ld-library-path'
  phase.
 2015-04-16 10:54:07 +02:00
Ludovic Courtès f2feb0ce7c gnu: ffmpeg: Use 'modify-phases'. 
* gnu/packages/video.scm (ffmpeg)[arguments]: Use 'modify-phases'
  instead of 'alist-cons-after' et al.
 2015-04-16 10:35:33 +02:00
Ricardo Wurmus 2127cedb23 gnu: Add FASTX Toolkit. 
* gnu/packages/bioinformatics.scm (fastx-toolkit): New variable.
 2015-04-16 10:28:37 +02:00
Ricardo Wurmus f571e1c346 gnu: Add libgtextutils. 
* gnu/packages/textutils.scm (libgtextutils): New variable.
 2015-04-16 10:28:30 +02:00
Ricardo Wurmus 4f2bde4433 gnu: tbb: Set library rpath. 
* gnu/packages/tbb.scm (tbb)[arguments]: Add the rpath for lib directory of
  output to LDFLAGS.
 2015-04-16 10:23:03 +02:00
Ludovic Courtès 73b1b4eba9 gnu: icecat: Disable RUNPATH validation. 
* gnu/packages/gnuzilla.scm (icecat)[arguments]: Pass
  #:validate-runpath? #f.
 2015-04-16 09:56:10 +02:00
Paul van der Walt 945e9c0cef gnu: mu: Update to 0.9.12. 
* gnu/packages/mail.scm (mu): Update to version 0.9.12.
 2015-04-16 09:55:22 +02:00
Ludovic Courtès 3158097940 gnu: qt-4: Add "doc" output; use more standard directory names. 
* gnu/packages/qt.scm (qt-4)[outputs]: New field.
  (qt-4)[arguments]: Pass '-docdir', '-demosdir', and '-examplesdir'.
 2015-04-15 18:13:56 +02:00
Ludovic Courtès d29843466a gnu: qt-4: Do not set $LDFLAGS since that triggerred a build failure. 
Fixes the build failure at <http://hydra.gnu.org/build/379884/log/raw>:

  g++ -licui18n -Wl,-O1 [...] -o ../../../../bin/assistant [...]
  ld: warning: libQtCLucene.so.4, needed by /tmp/nix-build-qt-4.8.6.drv-0/qt-everywhere-opensource-src-4.8.6/lib/libQtHelp.so, not found (try using -rpath or -rpath-link)
  /tmp/nix-build-qt-4.8.6.drv-0/qt-everywhere-opensource-src-4.8.6/lib/libQtHelp.so: undefined reference to `QCLucenePhraseQuery::getTerms() const'
  [...]

* gnu/packages/patches/qt4-ldflags.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qt-4)[source]: Use it.
  [arguments]: Remove 'setenv' call in 'configure' phase.
 2015-04-15 18:13:56 +02:00
Ricardo Wurmus e46d517f6d gnu: icedtea6: Update to 1.13.7. 
* gnu/packages/java.scm (icedtea6): Update to version 1.13.7.
 2015-04-15 17:38:09 +02:00
宋文武 6c0dfb195c gnu: wine: Add $libdir to the RUNPATH of binaries. 
* gnu/packages/wine.scm (wine)[arguments]: Add #:configure-flags.
 2015-04-15 19:07:55 +08:00
宋文武 d43ba6f851 gnu: wine: Update to 1.7.40. 
* gnu/packages/wine.scm (wine): Update to 1.7.40.
 2015-04-15 19:07:10 +08:00
Andreas Enge a8bd3e5ebb gnu: calibre: Update to 2.24.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.24.0.
 2015-04-15 10:33:08 +02:00
宋文武 691cb22b1b gnu: fltk: Add $libdir to the RUNPATH of binaries. 
* gnu/packages/fltk.scm (fltk)[arguments]: Add
  DSOFLAGS=-Wl,-rpath=$libdir to #:configure-flags.
 2015-04-15 12:41:21 +08:00
宋文武 bda4ca76d4 gnu: fltk: Update to 1.3.3. 
* gnu/packages/fltk.scm (fltk): Update to 1.3.33
 2015-04-15 12:40:02 +08:00
宋文武 fee4693e42 gnu: recode: Fix tests. 
* gnu/packages/textutils.scm (recode): Rename phase 'fix-setup-py to 'pre-check.
  Set LD_LIBRARY_PATH to "$(pwd)/src/.libs" in pre-check phase.
 2015-04-15 12:04:51 +08:00
Ludovic Courtès 890024c51c gnu: Don't use #:prefix in (gnu packages sdl). 
* gnu/packages/sdl.scm: Remove #:prefix for (gnu packages fontutils)
  import, and adjust accordingly.  Add #:hide for (guix licenses)
  import.
 2015-04-14 23:25:37 +02:00
Ludovic Courtès 9d3fb6c767 install: Add a procedure to build a self-contained binary tarball. 
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>
at <http://lists.gnu.org/archive/html/guix-devel/2015-04/msg00229.html>.

* gnu/build/install.scm (populate-single-profile-directory): New procedure.
* gnu/system/install.scm (self-contained-tarball): New procedure.
* Makefile.am (guix-binary.%.tar.xz): New target.
 2015-04-14 23:20:26 +02:00
Andreas Enge c3768fa49b gnu: calibre: Update to 2.23.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.23.0.
 2015-04-14 20:00:55 +02:00
宋文武 04a20db2b3 gnu: gst-libav: Use system ffmpeg instead of bundled libav. 
* gnu/packages/gstreamer.scm (gst-libav)[arguments]: Remove #:phases.
  Add #:configure-flags.
  [native-inputs]: Remove yasm.
  [inputs]: Add ffmpeg.
 2015-04-14 23:03:05 +08:00
Mark H Weaver 6915912506 gnu: Add mdadm. 
* gnu/packages/linux.scm (mdadm): New variable.
 2015-04-14 10:44:19 -04:00
Andy Wingo 23a22af694 gnu: Add gnome-settings-daemon. 
* gnu/packages/gnome.scm (gnome-settings-daemon): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2015-04-14 14:46:34 +02:00
Andy Wingo 6a180f6f36 gnu: Add libgweather. 
* gnu/packages/gnome.scm (libgweather): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-04-14 14:09:21 +02:00
Ludovic Courtès 9349655820 gnu: qt-5: Allow the use of DT_RUNPATH for libQt5WebEngineCore.so. 
* gnu/packages/patches/qt5-runpath.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qt)[source]: Use it.
 2015-04-14 13:27:38 +02:00
Ludovic Courtès caf0c0a9e9 gnu: miniupnpc: Allow executables to find libupnp.so. 
* gnu/packages/upnp.scm (miniupnpc)[arguments]: Pass
  "LDFLAGS=-Wl,-rpath=...".
 2015-04-14 10:03:24 +02:00