c0edb5b543
gnu: arpack-ng: Update to 3.5.0; use 3.3.0 for julia.
...
Partly fixes <https://bugs.gnu.org/30282 >.
* gnu/packages/maths.scm (arpack-ng): Update to 3.5.0.
[native-inputs]: New field.
(arpack-ng-3.3.0): New variable.
* gnu/packages/julia.scm (julia)[inputs]: Use ARPACK-NG-3.3.0.
2018-03-12 16:09:24 +01:00
d8f46d5234
gnu: hdf5: Do not record the build-time kernel version.
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* gnu/packages/maths.scm (hdf5)[arguments]: Patch libhdf5.settings to prevent
the kernel version on the build node from affecting the output.
2018-03-09 11:20:22 +01:00
bd041e7fd3
gnu: dionysus: Update to 1.4.0.
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* gnu/packages/maths.scm (dionysus): Update to 1.4.0.
2018-02-28 14:42:36 +02:00
0181df537f
gnu: wxmaxima: Update to 18.02.0.
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* gnu/packages/maths.scm (wxmaxima): Update to 18.02.0.
[source]: Add patch.
[build-system]: Use the cmake-build-system.
[native-inputs]: Remove autoconf and automake.
[arguments]: Disable tests, remove 'autoconf' phase.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-02-24 18:05:52 -05:00
853b029209
gnu: vc: Update to 1.3.3.
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* gnu/packages/maths.scm (vc): Update to 1.3.3.
2018-02-23 13:18:32 -05:00
a89e0cf581
gnu: lpsolve: Update to 5.5.2.5.
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* gnu/packages/maths.scm (lpsolve): Update to 5.5.2.5.
2018-02-21 15:02:49 +01:00
6c96b5452c
gnu: lpsolve: Update phase style.
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* gnu/packages/maths.scm (lpsolve)[arguments]: Use INVOKE and
INSTALL-FILE, and end phases with #t.
2018-02-21 15:02:48 +01:00
ff9d1a2f0c
Merge branch 'master' into core-updates
2018-02-18 00:39:25 +01:00
445929e038
gnu: glpk: Update to 4.65.
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* gnu/packages/maths.scm (glpk): Update to 4.65.
2018-02-16 22:08:03 +01:00
288b8fd5e9
Merge branch 'master' into core-updates
2018-02-13 13:17:15 -05:00
637584253f
gnu: r-pracma: Update to 2.1.4.
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* gnu/packages/maths.scm (r-pracma): Update to 2.1.4.
2018-02-13 16:18:41 +01:00
4dba441c2a
gnu: hdf5: Build with -fPIC.
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* gnu/packages/maths.scm (hdf5)[arguments]: Add -fPIC to CFLAGS and CXXFLAGS.
2018-02-12 15:29:43 +01:00
efe2a2833c
Merge branch 'master' into core-updates
2018-02-09 01:46:34 -05:00
ed0c5d3c58
gnu: mcrl2: Fix typo in synopsis.
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* gnu/packages/maths.scm (mcrl2)[synopsis]: Fix typo.
[description]: Use @dfn.
2018-02-08 14:42:32 +01:00
5b05dce747
gnu: Add mcrl2.
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* gnu/packages/maths.scm (mcrl2): New variable.
2018-02-08 08:50:06 +01:00
e7ca634912
Merge branch 'master' into core-updates
2018-02-03 22:46:07 -05:00
c684008992
gnu: slepc: Apply invoke to configure flags.
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Follow-up to 94a1eb96d3
2018-02-02 08:26:59 -06:00
e01397b489
gnu: Add Elemental.
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* gnu/packages/maths.scm (elemental): New variable.
2018-02-02 08:26:59 -06:00
bee7bb315c
Merge branch 'master' into core-updates
2018-02-01 13:18:47 +01:00
cc809f1636
gnu: slepc: Update to 3.8.2.
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* gnu/packages/maths.scm (slepc): Update to 3.8.2.
2018-01-29 00:23:27 +01:00
3c524f2153
gnu: slepc: Update licence.
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SLEPc has been released under a 2-clause BSD licence since version 3.8.
* gnu/packages/maths.scm (slepc)[licence]: Switch to bsd-2.
2018-01-29 00:23:27 +01:00
94a1eb96d3
gnu: fbcat, slepc: Use INVOKE.
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* gnu/packages/linux.scm (fbcat)[arguments]: Substitute INVOKE for
SYSTEM*.
* gnu/packages/maths.scm (slepc)[arguments]: Likewise.
2018-01-29 00:23:27 +01:00
59cd0ba4ab
gnu: openspecfun: Update to 0.5.3.
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* gnu/packages/maths.scm (openspecfun): Update to 0.5.3.
2018-01-29 00:23:27 +01:00
a4f393b71f
gnu: opencascade-oce: Fix build with glibc 2.26.
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* gnu/packages/patches/opencascade-oce-glibc-2.26.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (opencascade-oce)[source]: Use it.
2018-01-16 15:24:49 -08:00
23de2e1d5f
Merge remote-tracking branch 'origin/master' into core-updates
2017-12-31 14:10:25 +02:00
dc7d6d4ece
gnu: Fix copyright symbol.
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* gnu/packages/maths.scm: Fix copyright line for Dave Love.
2017-12-24 20:51:48 +01:00
e9960d8cba
gnu, doc: Use HTTPS for cran.r-project.org home pages.
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* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm)
(r-maldiquant, r-gprofiler)[home-page]: Use HTTPS.
* gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape)
(r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle)
(r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim)
(r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken)
(r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab)
[home-page]: Likewise.
* gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign)
(r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability)
(r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr)
(r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports)
(r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops)
(r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options)
(r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel)
(r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3)
(r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots)
(r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools)
(r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp)
(r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn)
(r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]:
Likewise.
* gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]:
Likewise.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
2017-12-24 16:12:13 +01:00
493937ae1f
gnu: openblas: Build with LAPACK.
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* gnu/packages/maths.scm (openblas)[arguments]: Don't disable LAPACK;
add set-extralib phase.
[inputs]: Add fortran-lib.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-12-23 20:37:40 +01:00
f76fc96866
Merge branch 'master' into core-updates
2017-12-21 13:58:35 -05:00
677bc34d5b
gnu: Remove redundant cmake libdir configure flags.
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* gnu/packages/bioinformatics.scm (imp)[arguments]: Remove
CMAKE_INSTALL_LIBDIR flag.
* gnu/packages/calendar.scm (libical): Same.
* gnu/packages/engineering.scm (kicad): Same.
* gnu/packages/games.scm (openrct2, mgba): Same.
* gnu/packages/gl.scm (virtualgl): Same.
* gnu/packages/image-processing.scm (mia): Same.
* gnu/packages/linux.scm (rdma-core): Same.
* gnu/packages/machine-learning.scm (dlib): Same.
* gnu/packages/maths.scm (lapack, superlu, z3): Same.
* gnu/packages/password-utils.scm (keepassxc): Same.
* gnu/packages/photo.scm (darktable): Same.
* gnu/packages/rdesktop.scm (freerdp): Same.
2017-12-19 19:52:01 +02:00
a8db968fa4
gnu: wxmaxima: Update to 17.10.1.
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* gnu/packages/maths.scm (wxmaxima): Update to 17.10.1.
2017-12-19 11:26:16 -05:00
32cd878be0
Merge branch 'master' into core-updates
2017-12-19 01:42:40 +01:00
6ad0c92df5
gnu: ceres-solver: Update to 1.13.0.
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* gnu/packages/maths.scm (ceres-solver): Update to 1.13.0.
2017-12-15 07:32:43 -06:00
dec2ade108
gnu: glpk: Update to 4.64.
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* gnu/packages/maths.scm (glpk): Update to 4.64.
2017-12-09 23:18:33 +02:00
77181815ae
Merge branch 'master' into core-updates
2017-12-05 23:41:30 +01:00
440c4273b8
gnu: coda: Update to 2.18.3.
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* gnu/packages/maths.scm (coda): Update to 2.18.3.
2017-12-04 04:40:14 +01:00
05fd8e6b46
gnu: r-pracma: Update to 2.1.1.
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* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
2017-11-30 17:28:24 +01:00
2dd12924cf
Merge branch 'master' into core-updates
2017-11-19 15:01:00 +01:00
589e3f4e70
gnu: Move more packages from python to python-web.
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* gnu/packages/python.scm (python-requests, python2-requests)
(python-requests-2.7, python-oauthlib, python2-oauthlib)
(python-furl, python2-furl, python-wsgi-intercept)
(python-publicsuffix, python2-publicsuffix)
(python-publicsuffix2, python2-publicsuffix2): Move to...
* gnu/packages/python-web.scm: ... here.
* gnu/packages/bioinformatics.scm, gnu/packages/finance.scm:
gnu/packages/maths.scm, gnu/packages/terminals.scm,
gnu/packages/video.scm, gnu/packages/virtualization.scm: Adjust
accordingly.
2017-11-16 08:45:15 +01:00
5a80c15c14
gnu: Remove "open source" from descriptions.
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All software in Guix is Free Software.
* gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string.
* gnu/packages/firmware.scm (seabios)[description]: Likewise.
* gnu/packages/libupnp.scm (libupnp)[description]: Likewise.
* gnu/packages/maths.scm (cubicle)[description]: Likewise.
* gnu/packages/mingw.scm (mingw-w64)[description]: Likewise.
* gnu/packages/game-development.scm (openmw)[description]: Likewise.
[synopsis]: Remove "Free software".
2017-11-08 16:21:53 +01:00
b4c22f2546
Merge branch 'master' into core-updates
2017-11-02 22:24:24 +01:00
a254971350
gnu: units: Add readline input.
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* gnu/packages/maths.scm (units)[inputs]: Add readline.
2017-11-01 17:17:01 -05:00
0498d24866
gnu: units: Add python input.
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* gnu/packages/maths.scm (units)[inputs]: New field.
[arguments]: New field. Add 'wrap-units_cur phase.
2017-11-01 17:15:10 -05:00
f11d2849a1
gnu: units: Update to 2.16.
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* gnu/packages/maths.scm (units): Update to 2.16.
2017-11-01 17:11:15 -05:00
b7883b111d
Merge branch 'master' into core-updates
2017-10-25 20:02:08 +02:00
24404eaf93
gnu: dealii: Update to 8.5.1.
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Fixes compilation with boost@1.64.0.
* gnu/packages/maths.scm (dealii): Update to 8.5.1.
2017-10-24 20:16:50 -05:00
4150da630f
gnu: p4est: Update to 2.0.
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* gnu/packages/maths.scm (p4est): Update to 2.0.
2017-10-24 20:16:50 -05:00
9ce587f231
gnu: libhilbert: Remove package.
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This package's source and webpage has disappeared for some time, and upstream
projects (e.g. libmesh) seem to be bundling it, so we remove it for now.
* gnu/packages/maths.scm (libhilbert): Remove variable.
2017-10-24 20:16:49 -05:00
958b5a1caa
gnu: slepc: Update to 3.8.0.
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* gnu/packages/maths.scm (slepc): Update to 3.8.0.
2017-10-24 20:16:49 -05:00
6fec298d3e
gnu: petsc: Update to 3.8.0.
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* gnu/packages/maths.scm (petsc): Update to 3.8.0
[native-inputs]: Remove perl, which is no longer needed.
2017-10-24 20:16:42 -05:00
Ludovic Courtès