886986b744
gnu: Add python-ont-fast5-api.
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* gnu/packages/bioinformatics.scm (python-ont-fast5-api): New variable.
2019-07-15 12:18:01 +02:00
d71d85cd17
gnu: Add python-progressbar33.
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* gnu/packages/python-xyz.scm (python-progressbar33): New variable.
2019-07-15 12:18:01 +02:00
64ed7c2258
gnu: rkflashtool: Update to 5.2-1.8966c4e.
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* gnu/packages/flashing-tools.scm (rkflashtool): Update to 5.2-1.8966c4e.
[version]: Use 'git-version'.
[source]: Use 'git-file-name'.
2019-07-15 12:10:32 +03:00
9af75a2630
channels: Avoid use of 'derivation-input-path'.
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* guix/channels.scm (old-style-guix?): Use 'derivation-name' rather than
'derivation-input-path'.
2019-07-15 10:01:05 +02:00
b9373e2627
gexp: 'lowered-gexp-guile' now returns a <derivation-input>.
...
* guix/derivations.scm (derivation-input-output-path): New procedure.
* guix/gexp.scm (lower-gexp): Wrap GUILE in a <derivation-input>.
(gexp->derivation): Adjust accordingly.
* guix/remote.scm (remote-pipe-for-gexp, remote-eval): Adjust
accordingly.
* tests/gexp.scm ("lower-gexp"): Adjust accordingly.
2019-07-15 10:01:05 +02:00
93c2a00739
derivations: Deprecate the previous calling convention.
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We will eventually require #:inputs to be a list of <derivation-input>;
store items will have to be passed as #:sources, already interned.
* guix/derivations.scm (warn-about-derivation-deprecation): New procedure.
(derivation): Add #:%deprecation-warning? parameter.
[warn-deprecation]: New macro.
[input->derivation-input, input->source]: Use it.
(build-expression->derivation): Pass #:%deprecation-warning?.
* po/guix/POTFILES.in: Add guix/derivations.scm.
2019-07-15 10:01:05 +02:00
9e64302d68
derivations: Update tests to use new calling convention.
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* tests/derivations.scm ("build derivation with 1 source"): Adjust to
new 'derivation' calling convention.
("identical files are deduplicated"): Likewise.
("fixed-output-derivation?"): Likewise.
("fixed-output derivation"): Likewise.
("fixed-output derivation, recursive"): Likewise.
("derivation with a fixed-output input"): Likewise.
("multiple-output derivation"): Likewise.
("multiple-output derivation, non-alphabetic order"): Likewise.
("read-derivation vs. derivation"): Likewise.
("user of multiple-output derivation"): Likewise.
("derivation with #:references-graphs"): Likewise.
("derivation #:allowed-references, ok"): Likewise.
("derivation #:allowed-references, not allowed"): Likewise.
("derivation #:allowed-references, self allowed"): Likewise.
("derivation #:allowed-references, self not allowed"): Likewise.
("derivation #:disallowed-references, ok"): Likewise.
("derivation #:disallowed-references, not ok"): Likewise.
("derivation #:leaked-env-vars"): Likewise.
("build derivation with coreutils"): Likewise.
("map-derivation, sources"): Likewise.
("derivation with local file as input"): Remove.
2019-07-15 10:01:05 +02:00
d145832151
derivations: 'map-derivation' uses the new 'derivation' calling convention.
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* guix/derivations.scm (map-derivation)[input->output-paths]: Adjust to
deal with an argument that's either 'derivation-input?' or a string.
[rewritten-input]: Return a <derivation-input> or a string.
Pass #:inputs and #:sources to 'derivation'.
2019-07-15 10:01:05 +02:00
02237f13ee
download: Use the new 'derivation' calling convention.
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* guix/download.scm (built-in-download): Pass MIRRORS and
CONTENT-ADDRESSED-MIRRORS as #:sources, not #:inputs.
2019-07-15 10:01:05 +02:00
266e54e2ac
gnu: guile-bootstrap: Use the new 'derivation' calling convention.
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* gnu/packages/bootstrap.scm (raw-build): In 'derivation' call,
distinguish #:inputs from #:sources, passing a list of
<derivation-input> as #:inputs.
2019-07-15 10:01:05 +02:00
3868577480
gexp: <lowered-gexp> separates sources from derivation inputs.
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* guix/gexp.scm (lower-inputs): Return either <derivation-input> records
or store items.
(lower-reference-graphs): Return file/input pairs.
(<lowered-gexp>)[sources]: New field.
(lower-gexp): Adjust accordingly.
(gexp->input-tuple): Remove.
(gexp->derivation)[graphs-file-names]: Handle only the
'derivation-input?' and 'string?' cases.
Pass #:sources to 'raw-derivation'; ensure #:inputs contains only
<derivation-input> records.
* guix/remote.scm (remote-eval): Adjust to the new <lowered-gexp>
interface.
* tests/gexp.scm ("lower-gexp"): Adjust to expect <derivation-input>
records instead of <gexp-input>
2019-07-15 10:01:05 +02:00
4daf89d619
derivations: 'derivation' primitive accepts <derivation> and #:sources.
...
This brings us closer to the <derivation> data type.
* guix/derivations.scm (derivation): Add #:sources parameter.
[input->derivation-input]: Add clause for 'derivation-input?'.
Honor SOURCES.
2019-07-15 10:01:04 +02:00
456c7ade09
syscalls: Use 'define-as-needed' for 'AT_' constants introduced in Guile 2.2.5.
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* guix/build/syscalls.scm (AT_FDCWD, AT_SYMLINK_NOFOLLOW, AT_REMOVEDIR)
(AT_SYMLINK_FOLLOW, AT_NO_AUTOMOUNT, AT_EMPTY_PATH): Define using
'define-as-needed'.
2019-07-15 10:00:12 +02:00
38302bd939
compile: Report the name of the file that cannot be compiled.
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Fixes <https://bugs.gnu.org/36640 >.
Reported by Robert Vollmert <rob@vllmrt.net>.
* guix/build/compile.scm (call/exit-on-exception): Add 'file' parameter
and honor it.
(exit-on-exception): Likewise.
(compile-files): Pass FILE to 'exit-on-exception'.
2019-07-15 10:00:12 +02:00
2f3c0fb39d
gnu: linux-libre: Fix build on aarch64.
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* gnu/packages/linux.scm (make-linux-libre)[arguments]: Remove
'work-around-gcc-7-include-path-issue phase.
2019-07-14 15:04:41 -04:00
be7eebe26d
gnu: linux-libre: Update to 5.2.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 5.2.
(%linux-libre-hash): Update hash.
* linux-libre-5.1: Rename to ...
* linux-libre-5.2: ... this. Use %linux-libre-5.2-patches.
* linux-libre: Switch to linux-libre-5.2.
* linux-libre-arm-veyron, linux-libre-arm-generic, linux-libre-arm-omap2plus:
Use %linux-libre-5.2-patches.
* linux-libre-headers-5.1: Rename to ...
* linux-libre-headers-5.2: ... this.
* %linux-libre-5.1-patches: Rename to ...
* %linux-libre-5.2-patches: ... this.
* gnu/packages/aux-files/linux-libre/5.1-arm-veyron.conf,
gnu/packages/aux-files/linux-libre/5.1-arm.conf,
gnu/packages/aux-files/linux-libre/5.1-arm64.conf,
gnu/packages/aux-files/linux-libre/5.1-i686.conf,
gnu/packages/aux-files/linux-libre/5.1-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.2-arm-veyron.conf,
gnu/packages/aux-files/linux-libre/5.2-arm.conf,
gnu/packages/aux-files/linux-libre/5.2-arm64.conf,
gnu/packages/aux-files/linux-libre/5.2-i686.conf,
gnu/packages/aux-files/linux-libre/5.2-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Update accordingly.
2019-07-14 15:02:45 -04:00
a4bb189210
Revert "guix: node-build-system: Use guile-json instead of a custom parser."
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The effect of this change was to import the (json parser) from the host
side into the build side. The solution here would be to do the equivalent
of ‘with-extensions’ for gexps. Since we don't use gexps for build
systems just yet, revert this for now.
This reverts commit 8eb0ba532e
2019-07-14 20:18:07 +02:00
3c6d7fa842
gnu: Add emacs-elpher.
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* gnu/packages/emacs-xyz.scm (emacs-elpher): New variable.
2019-07-14 20:14:35 +05:30
39a20acc06
gnu: nzbget: Update to 21.0.
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* gnu/packages/networking.scm (nzbget): Update to 21.0.
2019-07-14 15:55:47 +02:00
8eb0ba532e
guix: node-build-system: Use guile-json instead of a custom parser.
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* guix/build/json.scm: Remove file.
* Makefile.am: Remove it.
* guix/build/node-build-system.scm: Use (json parser) instead of (guix build json).
* guix/build-system/node.scm: Idem.
2019-07-14 14:57:46 +02:00
09a1f92f61
build: Add node-build-system.
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* guix/build/node-build-system.scm: New file.
* guix/build-system/node.scm: New file.
* guix/build/json.scm: New file.
* doc/guix.texi: Document it.
* Makefile.am: Added new files.
Co-Authored-By: Julien Lepiller <julien@lepiller.eu>
2019-07-14 12:20:48 +02:00
041e03847b
gnu: Add evisum.
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* gnu/packages/enlightenment.scm (evisum): New variable.
2019-07-14 11:02:23 +03:00
53f2164272
channels: Add optional directory to channel metadata.
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* guix/channels.scm (<channel-metadata>): Add directory slot. Update users.
(read-channel-metadata-from-source): New function.
(standard-module-derivation): Use it.
* doc/guix.texi (Package Modules in a Subdirectory): New subsection.
2019-07-14 00:58:09 +02:00
bee9f97e0a
gnu: Add s-tui.
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* gnu/packages/admin.scm (s-tui): New variable.
2019-07-13 23:18:54 +01:00
29fe71152f
gnu: python-rpy2: Update to 3.0.4-1.19868a8.
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* gnu/packages/statistics.scm (python-rpy2): Update to 3.0.4-1.19868a8.
[source]: Fetch from repository.
[propagated-inputs]: Add python-cffi, python-numpy, python-pandas,
python-ipython, and python-tzlocal.
[native-inputs]: Add python-pytest.
[arguments]: Set TZ variable and use pytest to run the tests.
2019-07-13 23:50:01 +02:00
06e1ecbf17
doc: Update keyserver URL.
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* HACKING (Commit Access): Change keyserver URL to 'keys.openpgp.org'.
2019-07-13 14:25:19 -04:00
6b61dea336
gnu: Add pngquant.
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* gnu/packages/image.scm (pngquant): New variable.
2019-07-13 20:04:44 +02:00
8db1bd188b
gnu: Add libimagequant.
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* gnu/packages/image.scm (libimagequant): New variable.
2019-07-13 20:04:44 +02:00
f24276de9a
gnu: docker-compose: Update to 1.24.1.
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* gnu/packages/docker.scm (docker-compose): Update to 1.24.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-13 15:13:53 +02:00
3146b6da6d
gnu: python-docker-py: Update to 3.7.3.
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* gnu/packages/docker.scm (python-docker-py): Update to 3.7.3.
[inputs]: Use PYTHON-REQUESTS-2.20 instead of PYTHON-REQUESTS.
Add PYTHON-DOCKER-PYCREDS, PYTHON-IPADDRESS, PYTHON-PARAMIKO, and
PYTHON-URLLIB3-1.24.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-07-13 15:13:53 +02:00
8bb591d426
gnu: python-dockerpty: Update to 0.4.1.
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* gnu/packages/docker.scm (python-dockerpty): Update to 0.4.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-13 15:13:53 +02:00
d59d56b2ad
gnu: python-docker-pycreds: Update to 0.4.0.
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* gnu/packages/docker.scm (python-docker-pycreds): Update to 0.4.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-13 15:13:53 +02:00
52cc489292
gnu: python-texttable: Update to 0.9.1.
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* gnu/packages/python-xyz.scm (python-texttable): Update to 0.9.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-13 15:13:53 +02:00
97f0bd7d68
gnu: Add python-requests-2.20.
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* gnu/packages/python-web.scm (python-requests-2.20): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-13 15:13:53 +02:00
a76e6a690f
gnu: Add python-idna-2.7.
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* gnu/packages/python-xyz.scm (python-idna-2.7): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-13 15:13:53 +02:00
7deb086864
gnu: Add python-urllib3-1.24.
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* gnu/packages/python-web.scm (python-urllib3-1.24): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-13 15:13:52 +02:00
e308b4f06a
gnu: Add python-cached-property.
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* gnu/packages/python-xyz.scm (python-cached-property): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-13 15:13:52 +02:00
86b0b7917f
gnu: rush: Update to 2.1.
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* gnu/packages/rush.scm (rush): Update to 2.1.
2019-07-13 15:13:52 +02:00
c1b87329bf
gnu: pigx-rnaseq: Update to 0.0.10.
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* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.10.
2019-07-13 13:51:52 +02:00
2a059ab995
doc: Increase VM memory size.
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* doc/guix.texi (Running Guix in a VM): Bump ‘-m‘ to 1 GiB to match its
@item below, and have a chance of being usable, too.
2019-07-13 05:26:01 +02:00
ffae5a7946
doc: Update gpg key fetching instructions.
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This mirrors the steps performed by etc/guix-install.sh.
* doc/guix.texi (KEY-SERVER): Replace moribund SKS key servers with...
(OPENPGP-SIGNING-KEY-URL): ...the TLS PKI of the future.
(Binary Installation, USB Stick and DVD Installation): Update the
@example gpg command to download the key directly from Savannah.
2019-07-13 04:55:46 +02:00
2516ba81be
gnu: wcslib: Update to 6.2.
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* gnu/packages/astronomy.scm (wcslib): Update to 6.2.
[arguments]: Add #:configure-flags to find CFITSIO.
2019-07-13 00:20:21 +02:00
7fc2d3a92d
gnu: wcslib: Don't use NAME in source URI.
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* gnu/packages/astronomy.scm (wcslib)[source]: Hard-code NAME.
2019-07-13 00:20:21 +02:00
17f90b679f
gnu: guile-wisp: fix url
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* gnu/packages/guile-xyz.scm (guile-wisp): add www to url (required due to hoster-changes)
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-12 23:54:19 +02:00
65610f7326
gnu: wisp: update to 1.0.2.
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* gnu/packages/guile-xyz (wisp): update to version 1.0.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-12 23:54:19 +02:00
9d34cc133f
gnu: cmus: Support AAC format.
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* gnu/packages/music.scm (cmus)[inputs]: Add faad2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-12 23:54:19 +02:00
e429566fbb
build: Use '-Wshadowed-toplevel' only when supported.
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* guix/build/compile.scm (supported-warning-type?): New procedure.
(%warnings): Remove 'unsupported-warning', though removing it doesn't
make any difference. Define 'optional', and use it to determine whether
to include 'shadowed-toplevel'.
2019-07-12 23:54:19 +02:00
6cf63fe887
gnu: Add emacs-gitlab-ci-mode.
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* gnu/packages/emacs-xyz.scm (emacs-gitlab-ci-mode): New variable.
2019-07-13 00:22:55 +03:00
5516a75b0b
gnu: Add emacs-matcha.
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* gnu/packages/emacs-xyz.scm (emacs-matcha): New variable.
2019-07-13 00:22:52 +03:00
dd9c137b2c
gnu: Blender: Update to 2.80-rc1.
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* gnu/packages/graphics.scm (blender): Update to 2.80-rc1.
2019-07-12 15:58:44 -04:00
Ricardo Wurmus