89ee8a6edf
gnu: rsem: Update to 1.3.1.
...
* gnu/packages/bioinformatics.scm (rsem): Update to 1.3.1.
[source]: Fetch from git; remove patch; delete bundled samtools.
[arguments]: Pass make flags; adjust phases.
[inputs]: Remove ncurses and samtools-0.1; add htslib-1.3.
* gnu/packages/patches/rsem-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-20 17:55:26 +02:00
a235ea4f30
gnu: ghc-pandoc-citeproc: Update to 0.14.3.1.
...
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): Update to 0.14.3.1.
2018-09-20 17:20:07 +02:00
e30397dddb
gnu: ghc-xml-conduit: Update to 1.8.0.1.
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* gnu/packages/haskell.scm (ghc-xml-conduit): Update to 1.8.0.1.
[inputs]: Add ghc-doctest.
2018-09-20 17:20:02 +02:00
391fc11f0e
gnu: python2-scikit-learn: Fix check phase.
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* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]:
Override check phase to disable broken tests and pass environment variables.
2018-09-20 15:56:59 +02:00
26358ac5ab
gnu: Add r-parmigene.
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* gnu/packages/cran.scm (r-parmigene): New variable.
2018-09-20 15:56:30 +02:00
3e12df7d71
gnu: Add emacs-dired-sidebar.
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* gnu/packages/emacs.scm (emacs-dired-sidebar): New public variable.
2018-09-20 13:29:29 +02:00
166b2c970e
gnu: eolie: Update home page.
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* gnu/packages/gnome.scm (eolie)[home-page]: Set to wiki.gnome.org/Apps/Eolie.
2018-09-20 13:29:29 +02:00
9926b8f809
gnu: services: Add iptables service.
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* gnu/services/networking.scm (<iptables-configuration>): New record type.
(iptables-service-type): New variable.
* gnu/tests/networking.scm (run-iptables-test): New procedure.
(%test-iptables): New variable.
* doc/guix.texi (Networking Services): Document it.
2018-09-20 13:09:55 +05:30
3e63a83c0f
gnu: u-boot: Use HTTPS home page.
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* gnu/packages/bootloaders.scm (u-boot)[home-page]: Use HTTPS.
2018-09-20 04:50:34 +02:00
84c7fbfd6d
gnu: ccid: Update to 1.4.30.
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* gnu/packages/security-token.scm (ccid): Update to 1.4.30.
2018-09-20 04:50:34 +02:00
4eb161962f
gnu: opusfile: Update to 0.11.
...
* gnu/packages/xiph.scm (opusfile): Update to 0.11.
2018-09-20 04:50:33 +02:00
e61c2991e4
Use INVOKE in (gnu packages xdisorg).
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* gnu/packages/xdisorg.scm (scrot, unclutter, xautolock, nxbelld)
[arguments]: Use INVOKE.
2018-09-20 04:17:04 +02:00
2385ecb224
Use INVOKE in (gnu packages shells).
...
* gnu/packages/shells.scm (mksh)[arguments]: Use INVOKE...
(scsh)[arguments]: ...and also return #t from all phases.
2018-09-20 04:17:04 +02:00
9923d5a40f
gnu: Use INVOKE & return #t from Ruby package phases.
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* gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from
all phases.
* gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute
INVOKE for SYSTEM*.
* gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate)
(ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins)
(ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure)
(ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard)
(ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers)
(ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer)
(ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery)
(ruby-rc4, ruby-concurrent)[arguments]: Likewise.
2018-09-20 04:17:04 +02:00
4f66ae2899
gnu: ruby-heredoc-unindent: Fix typo in description.
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* gnu/packages/ruby.scm (ruby-heredoc-unindent)[description]: Fix typo.
2018-09-20 04:17:03 +02:00
7616d75fd6
Use INVOKE in (gnu packages telephony).
...
* gnu/packages/telephony.scm (libiax2, mumble)[arguments]: Use INVOKE.
2018-09-20 04:17:03 +02:00
e564d33ce8
gnu: gourmet: Use HTTPS home page.
...
* gnu/packages/nutrition.scm (gourmet)[home-page]: Use HTTPS.
2018-09-20 04:17:03 +02:00
29a000b602
gnu: sg3-utils: Update to 1.44.
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* gnu/packages/scsi.scm (sg3-utils): Update to 1.44.
2018-09-20 04:17:02 +02:00
e266043e67
gnu: shotwell: Update to 0.28.4.
...
* gnu/packages/gnome.scm (shotwell): Update to 0.28.4.
2018-09-19 17:31:49 -04:00
508d5c5fa8
gnu: OpenSC: Update to 0.19.0 [security fixes].
...
Fixes CVE-2018-{16391,16392,16393,16418,16419,16420,16421,16422,16423,16424,
16425,16426,16427}.
* gnu/packages/security-token.scm (opensc): Update to 0.19.0.
2018-09-19 15:08:00 -04:00
1d98b44ea6
gnu: sbcl-slynk: Fix the build.
...
* gnu/packages/lisp.scm (sbcl-slynk-boot0): Update to commit
cbf84c36c4eca8b032e3fd16177a7bc02df3ec4c.
[origin]<snippet>: Replace slynk/util references with the built system name
slynk-util. Remove compile-time invocations of slynk-require.
(sbcl-slynk-util): Inherit from sbcl-slynk-boot0.
[inputs]: Add sbcl-slynk-boot0.
[arguments]: Set an appropriate asd-file and asd-system-name.
(sbcl-slynk-arglists)[arguments]: Set an appropriate asdf-system-name.
(sbcl-slynk-fancy-inspector)[arguments]: Likewise.
(sbcl-slynk-package-fu)[arguments]: Likewise.
(sbcl-slynk-mrepl)[arguments]: Likewise.
(sbcl-slynk-trace-dialog)[arguments]: Likewise.
(sbcl-slynk-profiler)[arguments]: Likewise.
(sbcl-slynk-indentation)[arguments]: Likewise.
(sbcl-slynk-retro)[arguments]: Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19 18:25:28 +02:00
241358dc94
services: networking: Remove unbound variable reference in 'stop'.
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* gnu/services/base.scm (static-networking-shepherd-service): Remove
spurious ":" in 'stop' method inadvertently introduced in commit
c9436025a9
2018-09-19 18:25:28 +02:00
7fd3082522
services: udev: Simplify 'start' method.
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* gnu/services/base.scm (udev-shepherd-service)[start](find): Remove.
(udev): Hardwire the eudev file name.
Use 'fork+exec-command' instead of 'primitive-fork' and 'exec-command'.
2018-09-19 18:25:27 +02:00
4d679255da
gnu: glm: Update to 0.9.9.2.
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* gnu/packages/maths.scm (glm): Update to 0.9.9.2.
2018-09-19 15:20:21 +02:00
f6ae59c2e0
gnu: feh: Update to 2.28.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.28.
2018-09-19 15:20:21 +02:00
f03c4ec649
gnu: arpack-ng: Update to 3.6.3.
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* gnu/packages/maths.scm (arpack-ng): Update to 3.6.3.
2018-09-19 15:20:21 +02:00
622ef2b90a
gnu: arpack-ng: Don't use unstable tarball.
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* gnu/packages/maths.scm (arpack-ng)[source]: Use GIT-FETCH.
2018-09-19 15:20:21 +02:00
c5c1e410cf
gnu: Reinstate xf86-video-ast.
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* gnu/packages/patches/xf86-video-ast-remove-mibstore.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-ast): New public variable.
2018-09-19 15:20:21 +02:00
6c1a658414
gnu: rust@1.19.0: Install libtest.
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* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Build
libtest.
2018-09-19 14:41:01 +02:00
4a90fcf9e7
gnu: mrustc: Enable tests.
...
* gnu/packages/rust.scm (mrustc)[arguments]: Add #:test-target.
<#:phases>[install]: Don't install test output.
2018-09-19 14:41:01 +02:00
1cfcb841ed
gnu: git-credential-netrc: Add Git.pm to PERL5LIB.
...
* gnu/packages/version-control.scm (git)[credential-netrc]: Add Git.pm to PERL5LIB.
2018-09-19 09:07:12 +02:00
0058888c7e
gnu: Add guile-debbugs.
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* gnu/packages/guile.scm (guile-debbugs): New variable.
2018-09-18 23:23:44 +02:00
32b3611375
gnu: Go 1.10: Update to 1.10.4.
...
* gnu/packages/golang.scm (go-1.10): Update to 1.10.4.
2018-09-18 15:30:03 -04:00
56c180750c
gnu: busybox: Update to 1.29.3.
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* gnu/packages/busybox.scm (busybox): Update to 1.29.3.
2018-09-18 14:18:43 +02:00
d99051715a
gnu: xorriso: Update to 1.5.0.
...
* gnu/packages/cdrom.scm (xorriso): Update to 1.5.0.
2018-09-18 13:50:32 +02:00
8190578fa0
gnu: libisofs: Update to 1.5.0.
...
* gnu/packages/cdrom.scm (libisofs): Update to 1.5.0.
2018-09-18 13:50:32 +02:00
4999f45ea9
gnu: libburn: Update to 1.5.0.
...
* gnu/packages/cdrom.scm (libburn): Update to 1.5.0.
2018-09-18 13:50:32 +02:00
487cf5aaf6
gnu: rc: Simplify.
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* gnu/packages/shells.scm (rc)[source]: Replace magic commit ID with the
tagged release. Use GIT-FILE-NAME.
[arguments]: Remove 'autoreconf' phase (relying on Guix's built-in
'bootstrap' phase instead) and adjust the ordering of 'patch-trip.rc'
accordingly.
2018-09-18 13:50:09 +02:00
7c0ed27a8b
gnu: ncmpc: Update to 0.30.
...
* gnu/packages/mpd.scm (ncmpc): Update to 0.30.
[arguments]: Add 'expand-C++-include-path' phase.
[inputs]: Add gcc-8.
2018-09-18 13:50:09 +02:00
8ecd843df5
gnu: exfat-utils: Update to 1.3.0.
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* gnu/packages/mtools.scm (exfat-utils): Update to 1.3.0.
2018-09-18 13:50:09 +02:00
b22c44f1ea
gnu: cinnamon-desktop: Use Guix's built-in bootstrap phase.
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* gnu/packages/cinnamon.scm (cinnamon-desktop)[arguments]: Remove
'autoconf' phase. Add 'skip-premature-configure' phase.
2018-09-18 13:49:23 +02:00
0edc232be9
gnu: gourmet: Use INVOKE.
...
* gnu/packages/nutrition.scm (gourmet)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-09-18 13:49:23 +02:00
56c240ba8c
gnu: Add confusion-mdl.
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* gnu/packages/lisp.scm (confusion-mdl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-17 23:19:45 +02:00
d68aa41573
gnu: enlightenment: Update to 0.22.4.
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* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.4.
2018-09-17 12:50:21 +02:00
ee127549a3
gnu: efl: Update to 1.21.1.
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* gnu/packages/enlightenment.scm (efl): Update to 1.21.1.
2018-09-17 12:50:21 +02:00
f6a4d57e06
gnu: foo2zjs: Update to 20180910.
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* gnu/packages/cups.scm (foo2zjs): Update to 20180910.
2018-09-17 12:50:21 +02:00
a09a21190f
gnu: libiptcdata: Mark up description.
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* gnu/packages/image.scm (libiptcdata)[description]: Use @dfn{}.
2018-09-17 12:50:20 +02:00
99d386a71f
gnu: powwow: Update to 1.2.18.
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* gnu/packages/games.scm (powwow): Update to 1.2.18.
2018-09-17 12:50:20 +02:00
36aff81aa3
gnu: powwow: Use HTTPS home page.
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* gnu/packages/games.scm (powwow)[home-page]: Use HTTPS.
2018-09-17 12:50:20 +02:00
956bcc8ed2
gnu: python-dirsync: Update to 2.2.3.
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* gnu/packages/python.scm (python-dirsync): Update to 2.2.3.
[native-inputs]: Remove unzip.
2018-09-17 12:50:20 +02:00
Ricardo Wurmus