Commit Graph

3326 Commits

Author SHA1 Message Date
Ricardo Wurmus 0ebef06dbe
build-system/r: Update to Bioconductor 3.7.
This is a follow-up to 41f17554d8.

* guix/build-system/r.scm (bioconductor-uri): Update to version 3.7.
2018-06-05 09:58:52 +02:00
Ludovic Courtès 8292f5a9c5
self: Do not build (guix man-db).
* guix/self.scm (specification->package): Remove "guile-gdbm-ffi" and
"guile2.0-gdbm-ffi".
(compiled-guix)[guile-gdbm-ffi]: Remove.
[dependencies]: Remove it.
[*core-modules*]: Add "guix/man-db.scm" via #:extra-files.
[*extra-modules*]: Exclude "guix/man-db.scm".
2018-06-02 16:02:51 +02:00
Ricardo Wurmus 41f17554d8
import: cran: Update to Bioconductor 3.7.
* guix/import/cran.scm (%bioconductor-version): Update to 3.7.
2018-06-02 13:39:13 +02:00
Ludovic Courtès 1458f768c1
self: Include gnu/build/* in the result.
Previously, modules like gnu/build/cross-toolchain.scm or
gnu/build/svg.scm were missing from the result.

* guix/self.scm (compiled-guix)[*system-modules*]: Add gnu/build/* to
 #:extra-files.
(imported-files)[same-target?]: New procedure.
[build]: Call 'delete-duplicates' on FILES.
2018-06-02 00:43:49 +02:00
Ludovic Courtès 8031b3fa3c
self: 'compiled-files' builds the given list of files.
* guix/self.scm (compiled-files): Add 'module-files' parameter.
[build]: 'process-directory' now honors MODULE-FILES instead of
building any '.scm' file it sees.
(scheme-node): Adjust accordingly.
2018-06-02 00:43:49 +02:00
Ludovic Courtès e3a87d770f
self: Improve backtraces for 'imported-files'.
* guix/self.scm (imported-files): Pass #:env-vars.
2018-06-02 00:43:49 +02:00
Ludovic Courtès 54be2b4d75
self: Show backtraces on more columns.
* guix/self.scm (compiled-modules): Add "COLUMNS" to #:env-vars.
2018-06-01 18:41:45 +02:00
Ludovic Courtès 6d52844cd4
self: Add dependency on guile-gdbm-ffi.
Fixes a regression introduced in
331ac4cc23 whereby "guile-gdbm-ffi" would
now be mandatory.

* guix/self.scm (specification->package): Add "guile-gdbm-ffi" and
"guile2.0-gdbm-ffi".
(compiled-guix)[guile-gdbm-ffi]: New variables.
[dependencies]: Add it.
2018-06-01 18:41:45 +02:00
Caleb Ristvedt bf5bf5778c
Add (guix store deduplication).
* guix/store/database.scm (register-path): Add #:deduplicate? and call
'deduplicate' when it's true.
(counting-wrapper-port, nar-sha256): Move to...
* guix/store/deduplication.scm: ... here.  New file.
* tests/store-deduplication.scm: New file.
* Makefile.am (STORE_MODULES): Add deduplication.scm.
(SCM_TESTS) [HAVE_GUILE_SQLITE3]: Add store-deduplication.scm.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 15:35:54 +02:00
Ludovic Courtès 285cc75c31
database: 'register-path' resets timestamps.
* guix/store/database.scm (reset-timestamps): New procedure.
(register-path): Use it.
2018-06-01 15:35:45 +02:00
Caleb Ristvedt 7f9d184d9b
Add (gnu store database).
* guix/config.scm.in (%store-database-directory): New variable.
* guix/store/database.scm: New file.
* tests/store-database.scm: New file.
* Makefile.am (STORE_MODULES): New variable.
(MODULES, MODULES_NOT_COMPILED): Adjust accordingly.
(SCM_TESTS) [HAVE_GUILE_SQLITE3]: Add tests/store-database.scm.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 15:35:32 +02:00
Ludovic Courtès d59e75f3b5
build: Check for Guile-SQLite3.
* m4/guix.m4 (GUIX_CHECK_GUILE_SQLITE3): New macro.
* configure.ac: Use it and define 'HAVE_GUILE_SQLITE3'.
* guix/self.scm (specification->package): Add "guile-sqlite3".
(compiled-guix)[guile-sqlite3]: New variable.
[dependencies]: Add it.
2018-06-01 15:35:15 +02:00
Ludovic Courtès 331ac4cc23
profiles: Use 'with-extensions'.
* guix/profiles.scm (manual-database)[build]: Use 'with-extensions'.
Remove 'add-to-load-path' call.
* guix/man-db.scm: Use (gdbm) the normal way; remove 'module-autoload!'
call.
2018-06-01 15:21:28 +02:00
Ludovic Courtès 13993c77fe
pack: Use 'with-extensions' when referring to (guix docker).
* guix/docker.scm: Use module (json) the normal way.
* guix/scripts/pack.scm (docker-image)[build]: Wrap in
'with-extensions'.
2018-06-01 15:21:28 +02:00
Ludovic Courtès 838e17d805
gexp: Add 'with-extensions'.
* guix/gexp.scm (<gexp>)[extensions]: New field.
(gexp-attribute): New procedure.
(gexp-modules): Write in terms of 'gexp-attribute'.
(gexp-extensions): New procedure.
(gexp->derivation): Add #:effective-version.
[extension-flags]: New procedure.
Honor extensions of EXP.
(current-imported-extensions): New syntax parameter.
(with-extensions): New macro.
(gexp): Honor CURRENT-IMPORTED-EXTENSIONS.
(compiled-modules): Add #:extensions and honor it.
(load-path-expression): Likewise.
(gexp->script, gexp->file): Honor extensions.
* tests/gexp.scm (%extension-package): New variable.
("gexp-extensions & ungexp")
("gexp-extensions & ungexp-splicing")
("gexp-extensions and literal Scheme object")
("gexp->derivation & with-extensions")
("program-file & with-extensions"): New tests.
* doc/guix.texi (G-Expressions): Document 'with-extensions'.
2018-06-01 15:20:54 +02:00
Ludovic Courtès 5d669883ec
gexp: 'compiled-modules' no longer overrides (guix build utils).
Until now 'compiled-modules' would override (guix build utils) with its
own.  Thus, when asked to build a different (guix build utils),
via #:module-path, it would fail badly because a (guix build utils)
module was already loaded and possibly incompatible with the new one.

This happened when running 'guix pull --branch=core-updates' from
current master: in 'core-updates', (guix build utils) exports
'ignore-error?' but in 'master' it does not.  Thus, 'guix pull' would
fail with:

  no binding `invoke-error?' in module (guix build utils)
  builder for `/gnu/store/…-module-import-compiled.drv' failed with exit code 1
  cannot build derivation `/gnu/store/…-compute-guix-derivation.drv': 1 dependencies couldn't be built

This patch fixes it.

* guix/gexp.scm (compiled-modules)[build-utils-hack?]: New variable.
[build]: Load MODULES/build/utils.scm when it exists.
2018-06-01 13:50:27 +02:00
Mathieu Othacehe 8fc3a971b0
scripts: system: Sort profile generations in reverse order.
* guix/scripts/system.scm (profile-boot-parameters): Reverse
generation-numbers list. This allows old generations to be listed from most
recent to oldest in bootloaders configuration files.
2018-06-01 09:40:07 +02:00
Ludovic Courtès 9768848af8
records: Make a couple of procedures available at expansion time.
* guix/records.scm (current-abi-identifier, abi-check): Wrap in
'eval-when'.
2018-05-31 18:13:08 +02:00
Ludovic Courtès e13240f598
self: Reduce the set of dependencies.
By mistake we were adding more dependencies than needed to the Scheme
derivations.

* guix/self.scm (compiled-guix)[dependencies]: Use
'package-transitive-propagated-inputs', not 'package-transitive-inputs'.
2018-05-31 18:13:08 +02:00
Ludovic Courtès 8eff892fac
download: Remove unused procedure.
* guix/download.scm (gnutls-package): Remove.
2018-05-29 15:09:44 +02:00
Ricardo Wurmus b2817f0fa5
pack: Add support for squashfs images.
* guix/scripts/pack.scm (%formats): Add "squashfs" format.
(guix-pack): Adjust "archiver" dependent on pack-format.
(squashfs-image): New procedure.
* doc/guix.texi (Invoking guix pack): Document it.
2018-05-28 17:36:09 +02:00
Ricardo Wurmus 5ffac538aa
pack: Rename "tar" to "archiver".
* guix/scripts/pack.scm (self-contained-tarball, docker-image): Accept
"archiver" argument; remove "tar" argument.
(guix-pack): Invoke "build-image" with "archiver" argument.
2018-05-28 17:36:09 +02:00
Ludovic Courtès a5acc17a3c
file-systems: Remove 'title' field and add <file-system-label>.
The 'title' field was easily overlooked and was an endless source of
confusion.  Now, the value of the 'device' field is self-contained.

* gnu/system/file-systems.scm (<file-system>): Change constructor name
to '%file-system'.
[title]: Remove.
(<file-system-label>): New record type with printer.
(report-deprecation, device-expression)
(process-file-system-declaration, file-system): New macros.
(file-system-title): New procedure.
(file-system->spec, spec->file-system): Adjust to handle
<file-system-label>.
* gnu/system.scm (bootable-kernel-arguments): Add case for
'file-system-label?'.
(read-boot-parameters): Likewise.
(mapped-device-user): Avoid 'file-system-title'.
(fs->boot-device): Remove.
(operating-system-boot-parameters): Use 'file-system-device' instead of
'fs->boot-device'.
(device->sexp): Add case for 'file-system-label?'.
* gnu/bootloader/grub.scm (grub-root-search): Add case for
'file-system-label?'.
* gnu/system/examples/bare-bones.tmpl,
gnu/system/examples/beaglebone-black.tmpl,
gnu/system/examples/lightweight-desktop.tmpl,
gnu/system/examples/vm-image.tmpl: Remove uses of 'title'.
* gnu/system/vm.scm (virtualized-operating-system): Remove uses of
'file-system-title'.
* guix/scripts/system.scm (check-file-system-availability): Likewise,
and adjust fix-it hint.
(check-initrd-modules)[file-system-/dev]: Likewise.
* gnu/build/file-systems.scm (canonicalize-device-spec): Remove 'title'
parameter.
[canonical-title]: Remove.
Match on SPEC's type rather than on CANONICAL-TITLE.
(mount-file-system): Adjust caller.
* gnu/build/linux-boot.scm (boot-system): Interpret ROOT here.
* gnu/services/base.scm (file-system->fstab-entry): Remove use of
'file-system-title'.
* doc/guix.texi (File Systems): Remove documentation of the 'title'
field.  Rewrite documentation of 'device' and document
'file-system-label'.
2018-05-28 13:24:11 +02:00
Marius Bakke 9572d2b482
http-client: Send redirection messages to stderr.
* guix/http-client.scm (http-fetch): Use CURRENT-ERROR-PORT instead of default
output.
2018-05-26 17:04:17 +02:00
Ludovic Courtès 7874bbbb9f
records: Insert record type ABI checks in constructors.
* guix/records.scm (print-record-abi-mismatch-error): New procedure.
<top level>: Add 'set-exception-printer!' call.
(current-abi-identifier, abi-check): New procedures.
(make-syntactic-constructor): Add #:abi-cookie parameter.  Insert calls
to 'abi-check'.
(define-record-type*)[compute-abi-cookie]: New procedure.
Use it and emit a definition of the 'current-abi-identifier' for TYPE.
* tests/records.scm ("ABI checks"): New test.
2018-05-23 10:21:02 +02:00
Danny Milosavljevic de136f3ee7
profiles: Add hook to generate "gschemas.compiled".
* guix/profiles.scm (glib-schemas): New procedure.
(%default-profile-hooks): Add it.
2018-05-21 09:56:37 +02:00
Ludovic Courtès 827c56515e
union: Do not warn about harmless collisions.
Until now we'd get pointless messages like:

  warning: collision encountered:
    /gnu/store/…-gtk-icon-themes/share/icons/hicolor/icon-theme.cache
    /gnu/store/…-inkscape-0.92.3/share/icons/hicolor/icon-theme.cache
  warning: choosing /gnu/store/…-gtk-icon-themes/share/icons/hicolor/icon-theme.cache

* guix/build/union.scm (%harmless-collisions): New variable.
(warn-about-collision): Honor it.
2018-05-17 10:48:37 +02:00
Ludovic Courtès 30d722c392
gexp: Disable deprecation warnings for 'imported-modules'.
Fixes <https://bugs.gnu.org/31450>.
Reported by Martin Castillo <castilma@uni-bremen.de>.

* guix/gexp.scm (gexp->derivation): Pass #:deprecation-warnings to
'imported-modules'.
(imported-files): Add #:deprecation-warnings and pass #:env-vars to
'gexp->derivation'.
(imported-modules): Add #:deprecation-warnings and pass it to
'imported-files'.
2018-05-15 10:34:45 +02:00
Ludovic Courtès 91e5885549
pack: Link top-level entries of wrapped packages.
Previously things like:

  guix pack -R guile guile-json

would lead to a profile without Guile-JSON, and to an 'etc/profile' that
does not define 'GUILE_LOAD_PATH'.

* guix/scripts/pack.scm (wrapped-package)[build]: Link top-level entries
of PACKAGE into OUTPUT.
2018-05-14 23:01:36 +02:00
Ludovic Courtès 437f62f02a
utils: Add 'version-prefix?'.
* guix/utils.scm (version-prefix?): New procedure.
* tests/utils.scm ("version-prefix?"): New test.
2018-05-13 13:29:27 +02:00
Ludovic Courtès 26b8cadf88
pack: 'guix pack -S xxx' no longer adds entries twice to the tarball.
* guix/scripts/pack.scm (self-contained-tarball)[build](symlink->directives):
Do not add a 'directory' directive for "/".  Previously, as soon as we
were using '-S /bin=bin' or similar, we would add every entry a second
time in the tarball; this would translate as hard links in the tarball,
which tar < 1.30 sometimes fails to extract.
Pass symlinks defined in DIRECTIVES to 'tar'.
2018-05-11 18:42:42 +02:00
Julien Lepiller 10673d150f
guix: Fix typo.
* guix/scripts/lint.scm: Fix typo.
2018-05-11 14:36:53 +02:00
Danny Milosavljevic b87fc9ab9d
gnu: android-make-stub: Update to 0.6.0.
* gnu/packages/android.scm (android-make-stub): Update to 0.6.0.
* guix/build-system/android-ndk.scm (android-ndk-build): Modify.
(lower): Modify.
2018-05-10 15:35:28 +02:00
Ludovic Courtès 47a60325ca
pack: Add '--relocatable'.
* gnu/packages/aux-files/run-in-namespace.c: New file.
* Makefile.am (AUX_FILES): Add it.
* guix/scripts/pack.scm (<c-compiler>): New record type.
(c-compiler, bootstrap-c-compiler, c-compiler-compiler): New procedures.
(self-contained-tarball): Use
'relative-file-name' for the SOURCE -> TARGET symlink.
(docker-image): Add 'defmod' to please Geiser.
(wrapped-package, map-manifest-entries): New procedures.
(%options, show-help): Add --relocatable.
(guix-pack): Honor it.
2018-05-10 14:53:57 +02:00
Ludovic Courtès 54fd5ad0a5
search-paths: Add 'set-search-paths'.
* guix/search-paths.scm (set-search-paths): New procedure.
2018-05-10 14:53:57 +02:00
Ludovic Courtès 3636b1c7fe
profiles: Allow lowerable objects other than packages in <manifest-entry>.
* guix/profiles.scm (manifest-lookup-package)[entry-lookup-package]: Add
case where 'manifest-entry-item' returns something that's neither a
string nor a package.
2018-05-10 14:53:57 +02:00
Ludovic Courtès e00ade3fb8
profiles: Optionally use relative file names for symlink targets.
* guix/build/union.scm (symlink-relative): New procedure.
* guix/build/profiles.scm: Re-export it.
(build-profile): Add #:symlink and pass it to 'union-build'.
* guix/profiles.scm (profile-derivation): Add #:relative-symlinks?.
Pass #:symlink to 'build-profile'.
* tests/profiles.scm ("profile-derivation relative symlinks, one entry")
("profile-derivation relative symlinks, two entries"): New tests.
2018-05-10 14:53:57 +02:00
Ludovic Courtès dac1c97d13
union: Add 'relative-file-name'.
* guix/build/union.scm (%not-slash): New variable.
(relative-file-name): New procedure.
* tests/union.scm (test-relative-file-name): New macro and tests.
2018-05-10 14:53:56 +02:00
Danny Milosavljevic c6ee92c41b
gnu: Add android-googletest.
* gnu/packages/android.scm (android-googletest): New variable.
* guix/build-system/android-ndk.scm (android-ndk-build): Use it.
2018-05-10 02:12:03 +02:00
Danny Milosavljevic 3766aa921b
build-system: android-ndk: Let upstream install header files.
* guix/build/android-ndk-build-system.scm (install): Don't install header
files ourselves.
2018-05-10 01:06:22 +02:00
Danny Milosavljevic 9ed36cd3d6
build-system: android-ndk: Support unit tests.
* guix/build-system/android-ndk.scm (android-ndk-build): Add googletest.
* guix/build/android-ndk-build-system.scm (check): Check whether tests are
enabled.  Run root-level tests as well.
2018-05-10 01:06:22 +02:00
Danny Milosavljevic 436515cdb8
build: Add the Android NDK build-system.
* guix/build-system/android-ndk.scm: New file.
* guix/build/android-ndk-build-system.scm: New file.
* Makefile.am: Add them.
2018-05-09 19:16:04 +02:00
Chris Marusich 27ba9760e0
guix: Revert accidentally committed changes.
* guix/packages.go.134WZR: Remove it.  This empty file was
unintentionally included in ede121de42.
2018-05-09 00:04:27 -07:00
Chris Marusich ede121de42
guix: Separate the package name and version with "@", not "-".
* guix/packages.scm (package-full-name): By default, use "@" to separate
  the package name and package version.  Add an optional delimiter
  argument so that there is still a way to explicitly use a different
  delimiter.
* gnu/packages/commencement.scm (gcc-boot0) <unpack-gmp&co>: Adjust
  accordingly.
* tests/graph.scm: Adjust accordingly.
* tests/profiles.scm: Adjust accordingly.
* NEWS: Mention the change.

Fixes: <https://bugs.gnu.org/31088>.
Reported by Pierre Neidhardt <ambrevar@gmail.com>.
2018-05-08 21:55:46 -07:00
Ludovic Courtès d26727a143
pack: Fix handling of '-e'.
Fixes a regression introduced in
aad16cc196.
Reported by Julien Lepiller.

* guix/scripts/pack.scm (guix-pack)[manifest-from-args]: In
'match-lambda', add clause for single packages.
* tests/guix-pack.sh: Add test for '-e'.
2018-05-07 14:04:19 +02:00
Ludovic Courtès aad16cc196
pack: Honor package transformation options.
Previously they would silently be ignored.

* guix/scripts/pack.scm (guix-pack)[manifest-from-args]: Add 'store'
parameter.  Call 'options->transformation' and use it.
Move 'with-store' and 'parameterize' around the 'let'.
* tests/guix-pack.sh: Add test using '--with-source'.
2018-05-07 10:46:07 +02:00
Ludovic Courtès 16e7afb924
pack: Do not autoload (gnu packages base).
* guix/scripts/pack.scm: Do not autoload (gnu packages base).
Previously, we could end up with 'canonical-package' as an unbound
variable because of the incorrect autoload spec.
2018-05-07 10:36:13 +02:00
Ludovic Courtès f2e66663c2
self: Add "guix-packages-base" derivation.
This introduces an intermediate derivation, thereby reducing the amount
of rebuild that needs to happen when "leaf" package modules are
modified.

* guix/self.scm (compiled-guix)[*core-package-modules*]: New variable.
[*package-modules*, *system-modules*, *cli-modules*]: Depend on it.
Add it to the directory union.
2018-05-07 00:17:34 +02:00
Ludovic Courtès 2d2f98efb3
guix build: Nicely report unbound variables with hints.
* guix/ui.scm (print-unbound-variable-error): Add "error:" to the
message.
(report-unbound-variable-error): New procedure, with code formerly in
'report-load-error'.
(report-load-error): Use it.
(call-with-unbound-variable-handling): New procedure.
(with-unbound-variable-handling): New macro.
* guix/scripts/build.scm (options->derivations): Wrap body in
'with-unbound-variable-handling'.
* tests/guix-build.sh (GUIX_PACKAGE_PATH): Add test.
2018-05-04 15:07:08 +02:00
Ludovic Courtès 7f2f6a2cb2
ui: Factorize 'last-frame-with-source'.
* guix/ui.scm (last-frame-with-source): New procedure.
(load*)[frame-with-source]: Remove.
Use 'last-frame-with-source'.
2018-05-04 12:13:53 +02:00