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29113 Commits

Author SHA1 Message Date
Alex Vong 3c1edff5ca
gnu: java-fasterxml-jackson-databind: Update to 2.9.4 [fixes CVE-{2017-17485, 2018-5968}]. 
* gnu/packages/java.scm (java-fasterxml-jackson-databind): Update to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:27 -05:00
Alex Vong 38a0fc384a
gnu: java-fasterxml-jackson-core: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-core): Update to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:26 -05:00
Alex Vong 93dceea45e
gnu: java-fasterxml-jackson-annotations: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-annotations): Update to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:26 -05:00
Ben Woodcroft 5ebc8e7f41
gnu: diamond: Update to 0.9.18. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.18.
 2018-02-16 08:13:24 +10:00
Pjotr Prins aabcb6e57c
gnu: python-elasticsearch: Update to 6.1.1. 
* gnu/packages/python-web.scm (python-elasticsearch, python2-elasticsearch):
Update to 6.1.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 16:57:12 -05:00
Hartmut Goebel 34581f68c0
gnu: Add bpython. 
* gnu/packages/python.scm (bpython, bpython2): New variables.
 2018-02-15 21:44:07 +01:00
Hartmut Goebel e79a8424ca
gnu: Add python-curtsies. 
* gnu/packages/terminals.scm (python-curtsies, python2-curtsies): New
  variables.
 2018-02-15 21:44:06 +01:00
Hartmut Goebel 573450e60c
gnu: Add python-blessings. 
* gnu/packages/terminals.scm (python-blessings, python2-blessings): New
  variables.
 2018-02-15 21:44:06 +01:00
Hartmut Goebel 46ddcf4a29
gnu: Add python-pyte. 
* gnu/packages/terminals.scm (python-pyte, python2-pyte): New variables.
 2018-02-15 21:44:06 +01:00
Leo Famulari 3026de3fce
gnu: irssi: Update to 1.1.1 [fixes CVE-2018-{7050,7051,7052,7053,7054}]. 
* gnu/packages/irc.scm (irssi): Update to 1.1.1.
 2018-02-15 14:41:26 -05:00
Oleg Pykhalov 06a9dc2fd0
union: Wrap collisions with newlines. 
* guix/build/union.scm (union-build): Wrap collisions with newlines.
 2018-02-15 20:51:51 +03:00
Oleg Pykhalov 5b23829299
gnu: Add epipe. 
* gnu/packages/emacs.scm (epipe): New public variable.
 2018-02-15 20:45:45 +03:00
Danny Milosavljevic a124e4258a
gnu: ghc: Make memory allocator decommit memory on Linux < 4.5. 
* gnu/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/haskell.scm (ghc-8): Use it.
 2018-02-15 17:27:50 +01:00
Ricardo Wurmus 4aa0a1df2d
gnu: java-jeromq: Update to 0.4.3. 
* gnu/packages/java.scm (java-jeromq): Update to 0.4.3.
[arguments]: Disable DealerSpecTest.
 2018-02-15 17:19:09 +01:00
Ricardo Wurmus 36b39d1618
gnu: java-testng: Update to 6.14.2. 
* gnu/packages/java.scm (java-testng): Update to 6.14.2.
[arguments]: Delete failing tests and those requiring groovy.
[native-inputs]: Add java-mockito-1.
 2018-02-15 17:19:06 +01:00
Ricardo Wurmus 152d30c346
gnu: Add python-loompy. 
* gnu/packages/bioinformatics.scm (python-loompy): New variable.
 2018-02-15 17:19:00 +01:00
Ricardo Wurmus 3082de04c2
gnu: Add r-dropbead. 
* gnu/packages/bioinformatics.scm (r-dropbead): New variable.
 2018-02-15 17:18:54 +01:00
Ricardo Wurmus 05f7296012
gnu: Add r-delayedmatrixstats. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): New variable.
 2018-02-15 17:18:52 +01:00
Ricardo Wurmus fc162dbaec
gnu: Add python-typing. 
* gnu/packages/python.scm (python-typing, python2-typing): New variables.
 2018-02-15 17:18:50 +01:00
Ricardo Wurmus 130d290e29
gnu: Add python-future-fstrings. 
* gnu/packages/python.scm (python-future-fstrings): New variable.
 2018-02-15 17:18:46 +01:00
Ricardo Wurmus 8b2ad13b19
gnu: Add python-tokenize-rt. 
* gnu/packages/python.scm (python-tokenize-rt): New variable.
 2018-02-15 17:18:43 +01:00
Ricardo Wurmus e035589482
gnu: augeas: Update to 1.10.1. 
* gnu/packages/augeas.scm (augeas): Update to 1.10.1.
 2018-02-15 17:17:19 +01:00
Ludovic Courtès ec0f3d0a5b
gnu: ifdtool: Fix Texinfo markup. 
* gnu/packages/flashing-tools.scm (ifdtool)[description]: Fix Texinfo
markup.
 2018-02-15 16:35:39 +01:00
Konrad Hinsen 4a979afe1b
pack: Add '--manifest'. 
* guix/scripts/pack.scm (%options, show-help): Add --manifest.
(guix-pack)[manifest-from-args]: New procedure.
Use it.
* doc/guix.texi (Invoking guix pack): Document --manifest.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-02-15 15:40:36 +01:00
Diego Nicola Barbato 47551a761b
pull: Update the %sbindir variable in (guix config) when building. 
Fixes <https://bugs.gnu.org/30370>.

* build-aux/build-self.scm (guix): New variable.
(builder): Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-02-15 15:40:35 +01:00
Danny Milosavljevic 8e60743d8b
gnu: me-cleaner: Update synopsis. 
* gnu/packages/flashing-tools.scm (me-cleaner)[synopsis]: Modify.
 2018-02-15 15:01:39 +01:00
Danny Milosavljevic 7e0a6fac0b
services: mingetty: Move tty optionality to agetty. 
Follow-up to 5a9902c8ac.

* gnu/services/base.scm (mingetty-shepherd-service): Move tty optionality check to...
(agetty-shepherd-service): ...here.
 2018-02-15 12:32:18 +01:00
Danny Milosavljevic 0297a160a0
gnu: Add me-cleaner. 
* gnu/packages/flashing-tools.scm (me-cleaner): New variable.
 2018-02-15 12:05:25 +01:00
Danny Milosavljevic 9721c0b6ef
gnu: Add intelmetool. 
* gnu/packages/flashing-tools.scm (intelmetool): New variable.
 2018-02-15 12:05:24 +01:00
Danny Milosavljevic 501e184716
gnu: Add ifdtool. 
* gnu/packages/flashing-tools.scm (ifdtool): New variable.
 2018-02-15 12:05:24 +01:00
Danny Milosavljevic 5a9902c8ac
services: agetty: Add agetty instance to base services. Make its tty optional. 
* gnu/services/base.scm (%base-services): Instantiate agetty-service.
(default-serial-port): New variable.
(agetty-shepherd-service): Make tty optional, default to the above.
* doc/guix.texi (agetty-configuration): Update "tty" documentation.
* gnu/system/install.scm (agetty-default-service): Delete variable.
(embedded-installation-os): Remove agetty-default-service instance.
Add "console" kernel-argument.
 2018-02-15 12:05:21 +01:00
Ludovic Courtès 2b870303e7
gnu: cuirass: Update to 4ab2f2c. 
Previous revision had (web server fiberized) installed in the wrong
place, and would thus fail to start.

* gnu/packages/ci.scm (cuirass): Update to 4ab2f2c.
 2018-02-15 10:32:20 +01:00
Pierre Langlois 6ca15c9ef6
gnu: crypto++: Update to 6.0.0. 
* gnu/packages/crypto.scm (crypto++): Update to 6.0.0.
* gnu/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-02-15 10:23:42 +01:00
Ludovic Courtès 9859b5c190
gnu: nss-mdns: Update to 0.12.0. 
* gnu/packages/avahi.scm (nss-mdns): Update to 0.12 + patch.
(nss-mdns-0.10.0): Remove.
* gnu/services/avahi.scm (avahi-service-type): Use NSS-MDNS again.
 2018-02-15 10:16:00 +01:00
Ludovic Courtès d1688e6ad4
gnu: cuirass: Update to 8080c17. 
* gnu/packages/ci.scm (cuirass): Update to 8080c17.
[inputs]: Add GUILE-FIBERS.
[arguments] <wrap-program>: Add Fibers to the search path in the
wrapper.
 2018-02-14 23:44:28 +01:00
Ludovic Courtès 499e499b8e
gnu: guile-sqlite3: Update to 10c13a7. 
* gnu/packages/guile.scm (guile-sqlite3): Update to 10c13a7.
 2018-02-14 23:38:22 +01:00
Julien Lepiller 08da664d10
gnu: Add cat-avatar-generator-service. 
* gnu/services/web.scm (cat-avatar-generator-service): New variable.
* doc/guix.text (Web Services): Document it.
 2018-02-14 23:18:41 +01:00
Julien Lepiller 3bedac5057
gnu: Add cat-avatar-generator. 
* gnu/packages/web.scm (cat-avatar-generator): New variable.
 2018-02-14 23:15:16 +01:00
Tobias Geerinckx-Rice f2ba6fc8bb
gnu: yadifa: Update to 2.3.8. 
* gnu/packages/dns.scm (yadifa): Update to 2.3.8.
 2018-02-14 20:39:53 +01:00
Marius Bakke 1bd08a268a
gnu: strace: Update to 4.21. 
* gnu/packages/linux.scm (strace): Update to 4.21.
[source](uri): Releases are now served from GitHub.
 2018-02-14 20:23:19 +01:00
Marius Bakke 1a46a6d02d
gnu: fio: Update to 3.4. 
* gnu/packages/benchmark.scm (fio): Update to 3.4.
 2018-02-14 20:23:19 +01:00
Oleg Pykhalov ac07b94ab5
gnu: Add emacs-scratch-el. 
* gnu/packages/emacs.scm (emacs-scratch-el): New public variable.
 2018-02-14 15:54:26 +03:00
Mark H Weaver 5fe9ba59ba
gnu: magit: Do not set 'magit-git-executable' to absolute file name. 
Fixes <https://bugs.gnu.org/30434>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* gnu/packages/emacs.scm (magit)[arguments]: Do not modify the default value
of 'magit-git-executable'.  Remove "#:modules" and "#:imported-modules".
 2018-02-14 03:48:20 -05:00
Mark H Weaver 84fe44201b
gnu: magit: Do not set 'magit-git-executable' to absolute file name. 
Fixes <https://bugs.gnu.org/30434>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* gnu/packages/emacs.scm (magit)[arguments]: Do not modify the default value
of 'magit-git-executable'.  Remove "#:modules" and "#:imported-modules".
 2018-02-14 03:42:07 -05:00
Mark H Weaver 02843215d8
gnu: shepherd: 'herd status' now sorts the result. 
Add a patch by Ludovic Courtès <ludo@gnu.org> from the upstream
shepherd repository to partially fix <https://bugs.gnu.org/30299>.

* gnu/packages/patches/shepherd-herd-status-sorted.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shepherd)[source]: Add patch.
 2018-02-14 03:42:02 -05:00
Mark H Weaver 932c98326d
Merge branch 'master' into core-updates 2018-02-14 03:40:08 -05:00
Rutger Helling 75538328c2
doc: Mention starting GNOME on Wayland manually. 
* doc/guix.texi (Desktop Services): Mention starting GNOME on Wayland manually.
 2018-02-14 08:49:28 +01:00
Rutger Helling 870541d6a7
gnu: mpv: Enable Vulkan support. 
* gnu/packages/video.scm (mpv)[inputs]: Add shaderc and vulkan-icd-loader.
 2018-02-14 08:18:58 +01:00
Rutger Helling 5b69baf0ad
gnu: Add shaderc. 
* gnu/packages/vulkan.scm (shaderc): New variable.
 2018-02-14 08:18:58 +01:00
Mark H Weaver c5971d473d
gnu: icecat: Add more fixes from upstream mozilla-esr52. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
 2018-02-13 19:53:35 -05:00