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41679 Commits

Author SHA1 Message Date
Ricardo Wurmus 272cb5a23f
gnu: r-rsamtools: Update to 2.0.1. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.1.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus d0983f294b
gnu: r-iranges: Update to 2.18.3. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.3.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus 7d8986c858
gnu: r-dt: Update to 0.9. 
* gnu/packages/statistics.scm (r-dt): Update to 0.9.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus a416d68049
gnu: r-lambda-r: Update to 1.2.4. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.4.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus 51997203fe
gnu: r-pkgconfig: Update to 2.0.3. 
* gnu/packages/statistics.scm (r-pkgconfig): Update to 2.0.3.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus 2b953e0153
gnu: r-devtools: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.2.1.
[propagated-inputs]: Add r-rlang.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus a2b40398e9
gnu: r-microbenchmark: Update to 1.4-7. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-7.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus b2449a31b3
gnu: r-knitr: Update to 1.25. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.25.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus ebf0b43098
gnu: r-digest: Update to 0.6.21. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.21.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 76e8d079a3
gnu: r-mgcv: Update to 1.8-29. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-29.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus b1a112f41b
gnu: r-assertable: Update to 0.2.7. 
* gnu/packages/cran.scm (r-assertable): Update to 0.2.7.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 446735de7d
gnu: r-parameters: Update to 0.2.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.2.0.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 4d86ea4aea
gnu: r-uwot: Update to 0.1.4. 
* gnu/packages/cran.scm (r-uwot): Update to 0.1.4.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus cbe42da235
gnu: r-optparse: Update to 1.6.4. 
* gnu/packages/cran.scm (r-optparse): Update to 1.6.4.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 4978222ad7
gnu: r-spdep: Update to 1.1-3. 
* gnu/packages/cran.scm (r-spdep): Update to 1.1-3.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus bc9a839fea
gnu: r-sf: Update to 0.8-0. 
* gnu/packages/cran.scm (r-sf): Update to 0.8-0.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus b9d9bc6665
gnu: r-spdata: Update to 0.3.2. 
* gnu/packages/cran.scm (r-spdata): Update to 0.3.2.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 194c68263a
gnu: r-tidytree: Update to 0.2.8. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.8.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 7c27558ad7
gnu: r-rcpphnsw: Update to 0.2.0. 
* gnu/packages/cran.scm (r-rcpphnsw): Update to 0.2.0.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 6b286750d9
gnu: r-rcppannoy: Update to 0.0.13. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.13.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus f889a1577c
gnu: r-bayestestr: Update to 0.3.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.3.0.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus e7c8c68532
gnu: r-raster: Update to 3.0-7. 
* gnu/packages/cran.scm (r-raster): Update to 3.0-7.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 14c3e7bb5b
gnu: r-sjmisc: Update to 2.8.2. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.2.
[propagated-inputs]: Add r-tidyselect.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus cd5d6e26db
gnu: r-shinyace: Update to 0.4.1. 
* gnu/packages/cran.scm (r-shinyace): Update to 0.4.1.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 9655b1d422
gnu: r-ttr: Update to 0.23-5. 
* gnu/packages/cran.scm (r-ttr): Update to 0.23-5.
[native-inputs]: Remove gfortran.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 290c75fc8f
gnu: r-tinytex: Update to 0.16. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.16.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus e85f05037b
gnu: r-recipes: Update to 0.1.7. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.7.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 65ddcce32c
gnu: r-curl: Update to 4.2. 
* gnu/packages/cran.scm (r-curl): Update to 4.2.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 33194de22d
gnu: r-htmltable: Update to 1.13.2. 
* gnu/packages/cran.scm (r-htmltable): Update to 1.13.2.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 8fa788740a
gnu: r-callr: Update to 3.3.2. 
* gnu/packages/cran.scm (r-callr): Update to 3.3.2.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus f3575adfe9
gnu: r-ellipsis: Update to 0.3.0. 
* gnu/packages/cran.scm (r-ellipsis): Update to 0.3.0.
 2019-09-28 12:24:13 +02:00
Arun Isaac 667c004c6e
gnu: Add stapler. 
* gnu/packages/pdf.scm (stapler): New variable.
 2019-09-28 12:12:29 +05:30
Tobias Geerinckx-Rice d49375c722
gnu: z3: Update to 4.8.6. 
* gnu/packages/maths.scm (z3): Update to 4.8.6.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice 3b1ccad0ed
gnu: xtensor: Use HTTPS home page. 
* gnu/packages/algebra.scm (xtensor)[home-page]: Use HTTPS.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice aec6c09a31
gnu: xtensor: Update to 0.20.9. 
* gnu/packages/algebra.scm (xtensor): Update to 0.20.9.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice c5b4916294
gnu: xtl: Update to 0.6.7. 
* gnu/packages/cpp.scm (xtl): Update to 0.6.7.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice 62b3a9b4c1
gnu: smu: Don't use unstable tarball. 
* gnu/packages/markup.scm (smu)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice 67e4abc531
gnu: smu: Update to 1.5. 
* gnu/packages/markup.scm (smu): Update to 1.5.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice dcedcc7c57
gnu: youtube-viewer: Update to 3.5.8. 
* gnu/packages/video.scm (youtube-viewer): Update to 3.5.8.
 2019-09-28 05:36:11 +02:00
Tobias Geerinckx-Rice f805785e2f
gnu: ubridge: Update to 0.9.16. 
* gnu/packages/networking.scm (ubridge): Update to 0.9.16.
 2019-09-28 05:36:11 +02:00
Eric Bavier ba567cae97
gnu: dealii: Update to 9.1.1. 
* gnu/packages/maths.scm (dealii): Update to 9.1.1.
[source]: Remove patch no longer needed.
* gnu/local.mk (dist_patch_DATA): ditto.
* gnu/packages/patches/dealii-mpi-deprecations.patch: Delete it.
 2019-09-27 22:23:44 -05:00
Brian Leung 3e27f472db
gnu: Add emacs-skeletor. 
* gnu/packages/emacs-xyz.scm (emacs-skeletor): New variable.
 2019-09-27 23:00:46 +02:00
Marius Bakke b48eb1e934
gnu: nginx: Update to 1.17.4. 
* gnu/packages/web.scm (nginx): Update to 1.17.4.
 2019-09-27 18:57:38 +02:00
Marius Bakke add8063742
gnu: mbedtls-apache: Update to 2.16.3. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.16.3.
 2019-09-27 18:57:37 +02:00
Marius Bakke 689b44bc3f
gnu: WebKitGTK: Update to 2.26.1. 
* gnu/packages/webkit.scm (webkitgtk-2.24): Rename to ...
(webkitgtk-2.26): ... this.  Update to 2.26.1.
[inputs]: Add BUBBLEWRAP, LIBSECCOMP, LIBWPE, WPEBACKEND-FDO, and XDG-DBUS-PROXY.
* gnu/packages/gnome.scm (eolie, epiphany)[inputs]: Adjust for changed
variable name.
* gnu/packages/web-browsers.scm (next-gtk-webkit)[inputs]: Likewise.
 2019-09-27 18:57:37 +02:00
Marius Bakke 9e0cb9d79d
gnu: Add xdg-dbus-proxy. 
* gnu/packages/glib.scm (xdg-dbus-proxy): New public variable.
 2019-09-27 18:57:37 +02:00
Marius Bakke 7970127ff0
gnu: Add wpebackend-fdo. 
* gnu/packages/webkit.scm (wpebackend-fdo): New public variable.
 2019-09-27 18:57:37 +02:00
Marius Bakke b037ea963f
gnu: Add libwpe. 
* gnu/packages/webkit.scm (libwpe): New public variable.
 2019-09-27 18:57:37 +02:00
Tobias Geerinckx-Rice 36cc160e72
gnu: xbacklight: Update to 1.2.3. 
* gnu/packages/xorg.scm (xbacklight): Update to 1.2.3.
 2019-09-27 12:28:43 +02:00
Tobias Geerinckx-Rice e6010e8920
gnu: wabt: Update to 1.0.12. 
* gnu/packages/web.scm (wabt): Update to 1.0.12.
 2019-09-27 12:28:43 +02:00
Tobias Geerinckx-Rice 29bdabb6fd
gnu: xygrib: Update to 1.2.6.1. 
* gnu/packages/geo.scm (xygrib): Update to 1.2.6.1.
 2019-09-27 12:28:43 +02:00
Tobias Geerinckx-Rice 966873e3e7
gnu: Order (gnu packages license)'s imports alphabetically. 
* gnu/packages/license.scm: Order module imports alphabetically.
 2019-09-27 12:28:42 +02:00
Pierre Neidhardt 8ff5c7355f
gnu: Add makeself-safeextract. 
* gnu/packages/compression.scm (makeself-safeextract): New variable.
 2019-09-27 09:53:55 +02:00
Brian Leung 18cd5f69dd
gnu: emacs-company-quickhelp: Update to 2.2.0-1.479676c. 
* gnu/packages/emacs-xyz.scm (emacs-company-quickhelp): Update to 2.2.0-1.479676c.
 2019-09-27 06:05:59 +02:00
Brian Leung 49175a9bab
gnu: emacs-org-re-reveal: Update to 2.5.1. 
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 2.5.1.
 2019-09-27 05:53:06 +02:00
Brian Leung 352b1dcd6b
gnu: emacs-counsel-dash: Fix home page. 
* gnu/packages/emacs-xyz.scm (emacs-counsel-dash): Fix home page.
 2019-09-27 03:33:29 +02:00
Brian Leung 9a0f6a3c93
gnu: emacs-evil-magit: Update to 0.4.2-3.4b66a1d. 
* gnu/packages/emacs-xyz.scm (emacs-evil-magit): Update to 0.4.2-3.4b66a1d.
 2019-09-26 23:31:09 +02:00
Nicolas Goaziou d31a532417
gnu: Add emacs-flycheck-grammalecte. 
* gnu/packages/emacs-xyz.scm (emacs-flycheck-grammalecte): New variable.
 2019-09-26 23:17:54 +02:00
Ludovic Courtès 99fcefb94c
gnu: texinfo: Add version 6.7. 
* gnu/packages/texinfo.scm (texinfo-6.7): New variable.
 2019-09-26 23:15:28 +02:00
Ludovic Courtès 7647c0dec9
gnu: tbb: Build in a reproducible fashion. 
Fixes <https://bugs.gnu.org/37522>.

* gnu/packages/tbb.scm (tbb)[source](snippets): Annihilate attempts to
capture the build time and kernel version.
 2019-09-26 23:15:28 +02:00
Ludovic Courtès 464caf72f9
shepherd: Ensure the log file has correct ownership. 
* gnu/build/shepherd.scm (make-forkexec-constructor/container): Ensure
LOG-FILE has correct ownership.
 2019-09-26 23:15:28 +02:00
Ludovic Courtès 0d3a4fc867
shepherd: 'make-forkexec-constructor/container' keeps the log file. 
* gnu/build/shepherd.scm (make-forkexec-constructor/container): Don't
call 'clean-up' on LOG-FILE.  This mirrors Shepherd commit
6892f638c78a14fedd075f664432757bc015c140.
 2019-09-26 23:15:28 +02:00
Hartmut Goebel 6eb1d20b68
gnu: Add debops. 
* gnu/packages/admin.scm (debops): New variable.
* gnu/packages/patches/debops-constants-for-external-program-names.patch,
  gnu/packages/patches/debops-debops-defaults-fall-back-to-less.patch:
  New files.
* gnu/local.mk: Add them.
 2019-09-26 17:18:23 +02:00
Hartmut Goebel 8581b40d09
gnu: Add python-distro. 
* gnu/packages/python-xyz.scm (python-distro): New variable.
 2019-09-26 17:18:22 +02:00
Danny Milosavljevic 2ea4587d83
gnu: python-libmpsse: Update to 1.4. 
* gnu/packages/embedded.scm (python2-libmpsse): Rename to...
(python-libmpsse): ...this.
[version]: Update to 1.4.
[source]: Change repository and version.
[inputs]: Change Python version.
[arguments]: Add #parallel-build?.
(python2-libmpsse): New variable.
 2019-09-26 15:58:48 +02:00
Brian Leung 205a0fe094
gnu: emacs-helm-dash: Update to 1.3.0-2.7f853bd. 
* gnu/packages/emacs-xyz.scm (emacs-helm-dash): Update to 1.3.0-2.7f853bd.
 2019-09-26 08:34:44 +02:00
Brian Leung b8563caf11
gnu: emacs-counsel-dash: Update to 0.1.3-2.24d370b. 
* gnu/packages/emacs-xyz.scm (emacs-counsel-dash): Update to 0.1.3-2.24d370b.
 2019-09-26 08:34:44 +02:00
Brian Leung 06bdb36837
gnu: Add emacs-dash-docs. 
* gnu/packages/emacs-xyz.scm (emacs-dash-docs): New variable.
 2019-09-26 08:34:43 +02:00
Brian Leung d8b352bea7
gnu: emacs-youtube-dl: Update to 1.0-2.af877b5. 
* gnu/packages/emacs-xyz.scm (emacs-youtube-dl): Update to 1.0-2.af877b5.
 2019-09-26 08:02:29 +02:00
Brian Leung 0155e23b34
gnu: emacs-mu4e-conversation: Update to 0.0.1-5.98110bb. 
* gnu/packages/emacs-xyz.scm (emacs-mu4e-conversation): Update to 0.0.1-5.98110bb.
 2019-09-26 07:56:51 +02:00
Brian Leung 82431a10cc
gnu: emacs-nov-el: Update to 0.2.9. 
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.2.9.
 2019-09-26 06:47:39 +02:00
Brian Leung e745dd119a
gnu: emacs-websocket: Enable some tests. 
* gnu/packages/emacs-xyz.scm (emacs-websocket): Enable some tests.
 2019-09-26 06:47:39 +02:00
Brian Leung eee9277ba5
gnu: emacs-make-it-so: Update to 0.1.0-2.b73dfb6. 
* gnu/packages/emacs-xyz.scm (emacs-make-it-so): Update to 0.1.0-2.b73dfb6.
 2019-09-26 06:47:38 +02:00
Brian Leung 595c7c339c
gnu: emacs-web-mode: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-web-mode)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2019-09-26 06:47:38 +02:00
Brian Leung fbbdce47e2
gnu: emacs-yaml-mode: Update to 0.0.14. 
* gnu/packages/emacs-xyz.scm (emacs-yaml-mode): Update to 0.0.14.
 2019-09-26 06:47:38 +02:00
Brian Leung 5d1d7ae413
gnu: emacs-evil-nerd-commenter: Enable tests. 
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Enable tests.
 2019-09-26 06:47:33 +02:00
Tobias Geerinckx-Rice 91af1031e5
gnu: dtc: Update to 1.5.1. 
* gnu/packages/bootloaders.scm (dtc): Update to 1.5.1.
[arguments]: Add -Wl,-rpath to LDFLAGS #:make-flags.
 2019-09-26 06:28:23 +02:00
Tobias Geerinckx-Rice f70e567eea
gnu: emacs-circe: Update to 2.11. 
* gnu/packages/emacs-xyz.scm (emacs-circe): Update to 2.11.
 2019-09-26 05:37:34 +02:00
Tobias Geerinckx-Rice 2359e235a4
gnu: dehydrated: Update to 0.6.5. 
* gnu/packages/tls.scm (dehydrated): Update to 0.6.5.
 2019-09-26 05:37:33 +02:00
Tobias Geerinckx-Rice 3c39dc680f
gnu: skopeo: Update to 0.1.39. 
* gnu/packages/virtualization.scm (skopeo): Update to 0.1.39.
 2019-09-26 05:24:31 +02:00
Tobias Geerinckx-Rice 9610a422b0
gnu: bspwm: Update to 0.9.9. 
* gnu/packages/wm.scm (bspwm): Update to 0.9.9.
 2019-09-26 05:24:31 +02:00
Tobias Geerinckx-Rice f51905a472
gnu: vimb: Update to 3.5.0. 
* gnu/packages/web-browsers.scm (vimb): Update to 3.5.0.
 2019-09-26 05:24:31 +02:00
Tobias Geerinckx-Rice 4a51d75929
gnu: libxcb: Don't use NAME in source URI. 
* gnu/packages/xorg.scm (libxcb)[source]: Hard-code NAME.
 2019-09-26 05:24:31 +02:00
Tobias Geerinckx-Rice 0a4f9445fd
gnu: xorgproto: Don't use NAME in source URI. 
* gnu/packages/xorg.scm (xorgproto)[source]: Hard-code NAME.
 2019-09-26 05:24:31 +02:00
Tobias Geerinckx-Rice 5dfdab05ba
gnu: encodings: Update to 1.0.5. 
* gnu/packages/xorg.scm (encodings): Update to 1.0.5.
 2019-09-26 05:24:31 +02:00
Tobias Geerinckx-Rice 3eb278aa9d
gnu: f3: Update to 7.2. 
* gnu/packages/disk.scm (f3): Update to 7.2.
 2019-09-26 05:24:31 +02:00
Tobias Geerinckx-Rice 3f3d712cc5
gnu: beets: Update to 1.4.9. 
* gnu/packages/music.scm (beets): Update to 1.4.9.
[source]: Remove patch.
[arguments]: Remove more Python 3.7 compatibility fixes.
* gnu/packages/patches/beets-python-3.7-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-09-26 05:24:30 +02:00
Tobias Geerinckx-Rice d94ec40758
gnu: beets: Use HTTPS home page. 
* gnu/packages/music.scm (beets)[home-page]: Use HTTPS.
 2019-09-26 05:24:30 +02:00
Tobias Geerinckx-Rice 65d20127ef
gnu: emacs-xelb: Update to 0.18. 
* gnu/packages/emacs-xyz.scm (emacs-xelb): Update to 0.18.
 2019-09-26 05:24:30 +02:00
Tobias Geerinckx-Rice 0ed0e3bfb7
gnu: fmit: Update to 1.2.13. 
* gnu/packages/music.scm (fmit): Update to 1.2.13.
 2019-09-26 05:24:30 +02:00
Tobias Geerinckx-Rice b106dd84db
gnu: xf86-input-wacom: Don't use NAME in source URI. 
* gnu/packages/xdisorg.scm (xf86-input-wacom)[source]: Hard-code NAME.
 2019-09-25 17:50:53 +02:00
Tobias Geerinckx-Rice 8aba8c7b74
gnu: youtube-dl: Update to 2019.09.12.1. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.09.12.1.
 2019-09-25 17:50:53 +02:00
Tobias Geerinckx-Rice b7f5fa8285
gnu: celluloid: Update to 0.17 from gnome-mpv. 
* gnu/packages/video.scm (celluloid): ‘New’ public variable.
(gnome-mpv): Redefine as DEPRECATED-PACKAGE.
 2019-09-25 17:50:52 +02:00
Tobias Geerinckx-Rice 3b6362969c
gnu: iproute2: Add libmnl input. 
* gnu/packages/linux.scm (iproute)[inputs]: Add libmnl.
 2019-09-25 17:50:51 +02:00
Tobias Geerinckx-Rice 005e539edf
gnu: iproute2: Update to 5.3.0. 
* gnu/packages/linux.scm (iproute): Update to 5.3.0.
 2019-09-25 17:50:50 +02:00
Tobias Geerinckx-Rice dc29bea340
gnu: rofi: Update to 1.5.4. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.4.
 2019-09-25 17:50:50 +02:00
Tobias Geerinckx-Rice e0aa4e949e
gnu: mlt: Update to 6.16.0. 
* gnu/packages/video.scm (mlt): Update to 6.16.0.
 2019-09-25 17:50:49 +02:00
Tobias Geerinckx-Rice d7a7d255c4
gnu: spirv-tools: Use GIT-FILE-NAME. 
* gnu/packages/vulkan.scm (spirv-tools)[source]: Use GIT-FILE-NAME.
 2019-09-25 17:50:48 +02:00
Tobias Geerinckx-Rice aa1c7b4914
gnu: spirv-tools: Update to 2019.2. 
* gnu/packages/vulkan.scm (spirv-tools): Update to 2019.2.
 2019-09-25 17:50:48 +02:00
Tobias Geerinckx-Rice 49dc1669a8
gnu: you-get: Update to 0.4.1355. 
* gnu/packages/video.scm (you-get): Update to 0.4.1355.
 2019-09-25 17:50:47 +02:00