nixo
/
guix-devel
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity
22,444 Commits 1 Branch 0 Tags 104 MiB
Commit Graph

22444 Commits

Author SHA1 Message Date
Ricardo Wurmus fed7200862
gnu: deeptools: Update to 2.5.1. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 2.5.1.
[arguments]: Remove.
[native-inputs]: Use "python-" instead of "python2-" variants.
[inputs]: Likewise; add python-py2bit.
 2017-07-09 17:07:27 +02:00
Ricardo Wurmus eb2200f3bd
gnu: Add python-py2bit. 
* gnu/packages/bioinformatics.scm (python-py2bit): New variable.
 2017-07-09 17:07:23 +02:00
Ricardo Wurmus bdb31853f0
gnu: Add java-jgit-4.2. 
* gnu/packages/version-control.scm (java-jgit-4.2): New variable.
 2017-07-09 16:57:05 +02:00
Ricardo Wurmus 2613f5aff0
gnu: Add java-jgit. 
* gnu/packages/version-control.scm (java-jgit): New variable.
 2017-07-09 16:57:05 +02:00
Ricardo Wurmus f8e4d0224b
gnu: Add java-slf4j-api. 
* gnu/packages/java.scm (java-slf4j-api): New variable.
 2017-07-09 16:57:04 +02:00
Ricardo Wurmus eb270ecfdd
gnu: Add java-javaewah. 
* gnu/packages/java.scm (java-javaewah): New variable.
 2017-07-09 16:57:04 +02:00
Ricardo Wurmus 218d093b15
gnu: Add java-classpathx-servletapi 
* gnu/packages/java.scm (java-classpathx-servletapi): New variable.
 2017-07-09 16:57:03 +02:00
Tobias Geerinckx-Rice efd5a841e5
gnu: youtube-dl: Update to 2017.07.09. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.09.
 2017-07-09 15:58:35 +02:00
Marius Bakke ed40e7c5eb
gnu: libjpeg-turbo: Update to 1.5.2. 
* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.2.
[arguments]<#:phases>: Remove.
 2017-07-09 15:12:53 +02:00
Feng Shu e2155f58c0
gnu: you-get: Update to 0.4.775. 
* gnu/packages/video.scm (you-get): Update to 0.4.775.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-07-09 21:27:37 +10:00
Leo Famulari b3cc304b30
gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776. 
This is a followup to commit 95bbaa02aa.
See <https://bugs.gnu.org/27621> for more information.

Poppler 0.56.0's ABI is not compatible with Poppler 0.52.0, so it's not
possible to graft the newer version in place of the older one.

This change leaves CVE-2017-9775 unfixed for now.

* gnu/packages/patches/poppler-CVE-2017-9776.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler-0.56.0): Replace with ...
(poppler/fixed): ... new variable.
(poppler)[replacement]: Replaced with poppler/fixed.
 2017-07-09 02:25:27 -04:00
Tobias Geerinckx-Rice 447f75825f
gnu: sshuttle: Update to 0.78.3. 
* gnu/packages/vpn.scm (sshuttle): Update to 0.78.3.
 2017-07-09 01:59:25 +02:00
Kei Kebreau 5143517c99
gnu: wxmaxima: Update to 17.05.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.0.
[source]: Update URL and add file-name.
[native-inputs]: Add autoconf, automake and gettext-minimal.
[arguments]: Add 'autoconf' phase.
 2017-07-08 17:05:55 -04:00
Efraim Flashner fac2b430b9
gnu: font-gnu-unifont: Update to 10.0.04. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.04.
 2017-07-08 23:49:29 +03:00
Oleg Pykhalov dde1e152ce
doc: Add note about private-key during offload. 
* doc/guix.texi (Using the Offload Facility): Add note about private-key.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-08 18:29:35 +02:00
Ben Woodcroft 4732e6ee84
gnu: blast+: Update to 2.6.0. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
[origin]: Remove bundled pcre.  Add patch.
[arguments]: Replace paths in run_with_lock.c.  Configure with pcre.
[inputs]: Add pcre, perl, python.
* gnu/packages/patches/blast+-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-07-08 12:05:59 +10:00
Kei Kebreau f2fa86cc82
gnu: maxima: Ensure gcc is available at runtime. 
* gnu/packages/maths.scm (maxima)[inputs]: Add gcc.
[arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase.
 2017-07-07 20:47:28 -04:00
Leo Famulari 0ca1e77c14
gnu: perl-dbd-mysql: Update to 4.043. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.043.
 2017-07-07 20:34:52 -04:00
Marius Bakke d28f90bed9
gnu: python-pyopenssl: Fix test failure on 32-bit platforms. 
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pyopenssl)[source]: Use it.
 2017-07-07 18:43:16 +02:00
Leo Famulari 4909eadfad
gnu: irssi: Update to 1.0.4 [fixes CVE-2017-{10965,10966}]. 
* gnu/packages/irc.scm (irssi): Update to 1.0.4.
 2017-07-07 12:36:00 -04:00
Danny Milosavljevic acc0f6bb58
guix system: Add file system label and uuid to iso9660-image. 
* gnu/system/vm.scm (system-disk-image): Pass root-label to ...
(iso9660-image): ... here.  Add keyword arguments #:file-system-label
and #:file-system-uuid.
 2017-07-07 18:04:31 +02:00
Mark H Weaver 0b1e2ecb25
gnu: webkitgtk: Update to 2.16.5. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.5.
 2017-07-07 11:54:01 -04:00
Tobias Geerinckx-Rice 5826e7b11b
gnu: rdma-core: Update to 14. 
* gnu/packages/linux.scm (rdma-core): Update to 14.
 2017-07-07 15:24:14 +02:00
Tobias Geerinckx-Rice 5d3474c5a9
gnu: catimg: Update to 2.3.2. 
* gnu/packages/image-viewers.scm (catimg): Update to 2.3.2.
 2017-07-07 15:24:14 +02:00
Leo Famulari 642656a144
gnu: python-parsedatetime: Update to 2.4. 
* gnu/packages/python.scm (python-parsedatetime, python2-parsedatetime):
Update to 2.4.
 2017-07-07 01:23:12 -04:00
Leo Famulari 93013f1e79
gnu: python-icalendar: Update to 3.11.5. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.5.
 2017-07-07 01:23:08 -04:00
Alex Vong dab536fe1a
gnu: libtiff: Fix CVE-2017-{9936,10688}. 
* gnu/packages/patches/libtiff-CVE-2017-9936.patch,
gnu/packages/patches/libtiff-CVE-2017-10688.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-07 00:06:37 -04:00
Kei Kebreau ab104672e1
gnu: xorg-server: Fix CVE-2017-{10971,10972}. 
* gnu/packages/patches/xorg-server-CVE-2017-10971.patch,
gnu/packages/patches/xorg-server-CVE-2017-10972.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (xorg-server)[source]: Use them.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-06 23:52:22 -04:00
Alex Vong 96dcaa0ca9
gnu: youtube-dl: Update to 2017.07.02. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.02.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2017-07-07 01:50:27 +02:00
Leo Famulari 0a66c38764
Revert "gnu: blast+: Update to 2.6.0." 
This reverts commit 18dea67dc3.
 2017-07-06 19:38:55 -04:00
Ludovic Courtès 5dfbd76971
gnu: shadow: Correctly match the system type. 
* gnu/packages/admin.scm (shadow)[inputs]: Use 'string-contains' instead
of 'string-prefix?' when matching the system type.
 2017-07-07 00:44:55 +02:00
Mark H Weaver 879b89d1ae
gnu: linux-libre@4.9: Update to 4.9.36. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.36.
 2017-07-06 18:41:45 -04:00
Mark H Weaver 95f69e9cfc
gnu: linux-libre@4.4: Update to 4.4.76. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.76.
 2017-07-06 18:40:43 -04:00
Tobias Geerinckx-Rice 856f68786f
gnu: iproute: Update to 4.12.0. 
* gnu/packages/linux.scm (iproute): Update to 4.12.0.
 2017-07-06 15:57:16 +02:00
Rutger Helling d3f52500f3
gnu: xpra: Update to 2.0.3. 
* gnu/packages/xorg.scm (xpra): Update to 2.0.3.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-07-06 13:28:08 +05:30
Efraim Flashner 8c6acc3efe
gnu: freeipmi: Remove readline from inputs. 
This is a follow-up to 694b7c3180.

* gnu/packages/freeimpi.scm (freeipmi)[inputs]: Really remove readline.
 2017-07-06 09:45:52 +03:00
Efraim Flashner 694b7c3180
gnu: freeipmi: Update to 1.5.6. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.6.
[inputs]: Remove readline.
 2017-07-06 09:39:09 +03:00
Tobias Geerinckx-Rice 08094dc926
gnu: zstd: Update to 1.3.0. 
* gnu/packages/compression.scm (zstd): Update to 1.3.0.
 2017-07-06 01:28:05 +02:00
Tobias Geerinckx-Rice 6c69663400
gnu: libvirt: Update to 3.5.0. 
* gnu/packages/qemu.scm (libvirt): Update to 3.5.0.
 2017-07-06 01:28:05 +02:00
Tobias Geerinckx-Rice ab3cac3785
gnu: bash-completion: Update to 2.6. 
* gnu/packages/bash.scm (bash-completion): Update to 2.6.
 2017-07-06 01:28:05 +02:00
Marius Bakke a6a979cba3
gnu: mariadb: Update to 10.1.25. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.25.
 2017-07-06 00:15:14 +02:00
Marius Bakke 79937f72c3
gnu: strace: Update to 4.18. 
* gnu/packages/linux.scm (strace): Update to 4.18.
 2017-07-06 00:15:13 +02:00
Marius Bakke ece8bb3812
gnu: xscreensaver: Update to 5.37. 
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.37.
 2017-07-06 00:15:13 +02:00
Ludovic Courtès ad01c7aa14
gnu: artanis: Update source URL. 
* gnu/packages/guile.scm (artanis)[source]: Change URL to mirror://gnu.
 2017-07-06 00:02:41 +02:00
Efraim Flashner 298fd38b4b
gnu: julia: Add support for aarch64-linux. 
* gnu/packages/julia.scm (julia)[arguments]: Add make-flag argument for
aarch64-linux.
[supported-systems]: Add aarch64-linux.
 2017-07-05 20:26:46 +03:00
Efraim Flashner cdc827b3f3
gnu: gcompris: Update to 17.05. 
* gnu/packages/education.scm (gcompris): Update to 17.05.
 2017-07-05 12:40:40 +03:00
Efraim Flashner 0dd8791922
gnu: gcc@6: Update to 6.4.0. 
* gnu/packages/gcc.scm (gcc@6, gfortran@6): Update to 6.4.0.
 2017-07-05 08:31:46 +03:00
Leo Famulari 7550f8eaeb
gnu: net-tools: Remove `hostname` from description. 
This is a followup to commit c9e0a44eec.

* gnu/packages/linux.scm (net-tools)[description]: Update description.
 2017-07-05 00:35:37 -04:00
Leo Famulari e048de6098
gnu: inet-utils: Mention `hostname` in description. 
* gnu/packages/admin.scm (inetutils)[description]: Update description.
 2017-07-05 00:35:28 -04:00
Stefan Reichör 2d677f84f4
gnu: tmux: Update to 2.5. 
* gnu/packages/tmux.scm (tmux): Update to 2.5.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-05 00:24:02 +02:00