2fe41e0fad
gnu: r-pracma: Update to 2.0.4.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.0.4.
2017-04-06 14:39:18 +02:00
2f44ef97a5
gnu: r-mixtools: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-mixtools): Update to 1.1.0.
[propagated-inputs]: Remove "r-boot", add "r-survival".
2017-04-06 14:39:17 +02:00
7a8efc81f8
gnu: r-viridis: Update to 0.4.0.
...
* gnu/packages/statistics.scm (r-viridis): Update to 0.4.0.
[propagated-inputs]: Add "r-viridislite".
2017-04-06 14:39:17 +02:00
b5d5344f32
gnu: r-viridislite: Update to 0.2.0.
...
* gnu/packages/statistics.scm (r-viridislite): Update to 0.2.0.
2017-04-06 14:39:17 +02:00
cdadca5e6f
gnu: r-matrixstats: Update to 0.52.1.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.1.
2017-04-06 14:39:17 +02:00
af7a4cc8a8
gnu: r-mvtnorm: Update to 1.0-6.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-6.
2017-04-06 14:39:17 +02:00
82b281fe12
gnu: r-e1071: Update to 1.6-8.
...
* gnu/packages/statistics.scm (r-e1071): Update to 1.6-8.
2017-04-06 14:39:16 +02:00
1d1fbb7336
gnu: r-sparsem: Update to 1.76.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.76.
2017-04-06 14:39:16 +02:00
fb708a1c74
gnu: r-xml: Update to 3.98-1.6.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.6.
2017-04-06 14:39:16 +02:00
1c27bb8f44
gnu: r-rsqlite: Update to 1.1-2.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-2.
2017-04-06 14:39:16 +02:00
0def707ad8
gnu: r-rmarkdown: Update to 1.4.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.4.
2017-04-06 14:39:16 +02:00
ac5e810205
gnu: r-bbmisc: Update to 1.11.
...
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.11.
2017-04-06 14:39:16 +02:00
f1870aef99
gnu: r-backports: Update to 1.0.5.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.0.5.
2017-04-06 14:39:15 +02:00
d05e45f33c
gnu: r-multitaper: Update to 1.0-13.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13.
2017-04-06 14:39:15 +02:00
0fbae8ebca
gnu: r-xml2: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1.
2017-04-06 14:39:15 +02:00
c6e40db528
gnu: r-ade4: Update to 1.7-6.
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6.
2017-04-06 14:39:15 +02:00
10ffdb94e4
gnu: r-data-table: Update to 1.10.4.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4.
2017-04-06 14:39:15 +02:00
9e8fac0c45
gnu: r-chron: Update to 2.3-50.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-50.
2017-04-06 14:39:14 +02:00
b8acb5aa46
gnu: r-cluster: Update to 2.0.6.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-04-06 14:39:14 +02:00
e8988ff9a0
gnu: r-dbi: Update to 0.6-1.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1.
2017-04-06 14:39:14 +02:00
5e0fa201a2
gnu: r-gdtools: Update to 0.1.4.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4.
2017-04-06 14:39:14 +02:00
7267f358a0
gnu: r-stringr: Update to 1.2.0.
...
* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0.
2017-04-06 14:39:14 +02:00
5beda28f6b
gnu: r-stringi: Update to 1.1.3.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3.
2017-04-06 14:39:14 +02:00
69a8ed6a12
gnu: r-rcpp: Update to 0.12.10.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10.
2017-04-06 14:39:13 +02:00
9948b8e24c
gnu: r-digest: Update to 0.6.12.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.12.
2017-04-06 14:39:13 +02:00
344e4741a1
gnu: r-survival: Update to 2.41-3.
...
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
2017-04-06 14:39:13 +02:00
a6dcc78cb0
gnu: r-mgcv: Update to 1.8-17.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
2017-04-06 14:39:13 +02:00
9704bda1b3
gnu: r-matrix: Update to 1.2-8.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
2017-04-06 14:39:12 +02:00
9aea2cdaff
gnu: r-lattice: Update to 0.20-35.
...
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
2017-04-06 14:39:12 +02:00
7ceb26ee83
gnu: r-rprojroot: Update to 1.2.
...
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
2017-04-06 14:39:12 +02:00
e15f962fef
gnu: r-htmltable: Update to 1.9.
...
* gnu/packages/web.scm (r-htmltable): Update to 1.9.
[propagated-inputs]: Add "r-checkmate" and "r-htmlwidgets".
2017-04-06 14:39:11 +02:00
d3812fb233
gnu: r-curl: Update to 2.4.
...
* gnu/packages/web.scm (r-curl): Update to 2.4.
2017-04-06 14:39:11 +02:00
4cd07e487e
gnu: r-genomeinfodb: Update to 1.10.3.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.3.
[propagated-inputs]: Add "r-rcurl".
2017-04-06 14:39:11 +02:00
acbeb2d56b
gnu: r-xvector: Update to 0.14.1.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.1.
2017-04-06 14:39:11 +02:00
da250f733a
gnu: r-bioccheck: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.10.1.
[propagated-inputs]: Remove "r-knitr" and "r-devtools".
2017-04-06 14:39:11 +02:00
d51f05f769
gnu: r-tidyr: Update to 0.6.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
2017-04-06 14:39:10 +02:00
1db293757b
gnu: r-roxygen2: Update to 6.0.1.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
2017-04-06 14:39:10 +02:00
bf6dcf59eb
gnu: Add r-commonmark.
...
* gnu/packages/statistics.scm (r-commonmark): New variable.
2017-04-06 14:39:10 +02:00
1cbb07a8e4
gnu: Add r-desc.
...
* gnu/packages/statistics.scm (r-desc): New variable.
2017-04-06 14:39:10 +02:00
67deeea41b
gnu: r-readr: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
2017-04-06 14:39:09 +02:00
33eb555e6f
gnu: r-tibble: Update to 1.3.0.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
2017-04-06 14:39:09 +02:00
aad7808526
gnu: r-jsonlite: Update to 1.3.
...
* gnu/packages/web.scm (r-jsonlite): Update to 1.3.
2017-04-06 14:39:09 +02:00
538bce2472
gnu: ldc-bootstrap: Delete failing test.
...
* gnu/packages/ldc.scm (ldc-bootstrap)[arguments]: Delete failing test in
build phase.
2017-04-06 14:34:12 +02:00
cb5be6df91
gnu: guile-aspell: Switch to Guile 2.2.
...
* gnu/packages/guile.scm (guile-aspell)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
2017-04-06 10:45:55 +02:00
7295087eb1
gnu: guile-aspell: Remove hard-coded "site/2.0" from $(guilesitedir).
...
* gnu/packages/guile.scm (guile-aspell)[arguments]: Remove
#:configure-flags. Add 'set-guilesitedir' phase.
2017-04-06 10:42:51 +02:00
234ea3d653
gnu: guile-aspell: Update to 0.4.
...
* gnu/packages/guile.scm (guile-aspell): Update to 0.4.
[arguments] <#:phases>: Adjust 'set-libaspell-file-name' to new source
tree layout.
2017-04-06 10:37:52 +02:00
79f912c710
Revert "gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'."
...
This reverts commit 01fe019166
2017-04-05 22:45:41 +02:00
b28187cd0c
Revert "gnu: bc: Update to 1.07."
...
This reverts commit dfee7daedb
2017-04-05 21:23:41 +02:00
cd381c317b
gnu: Move audacity to audio.scm.
...
* gnu/packages/audacity.scm: Remove file and move audacity...
* gnu/packages/audio.scm: ...here.
* gnu/local.mk: Remove reference to removed file.
2017-04-05 15:08:14 -04:00
1108a920bd
gnu: sra-tools: Fix glibc naming conflict.
...
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Add build phase
"patch-away-glibc-conflict" to fix a definition conflict with glibc 2.25.
2017-04-05 18:06:51 +02:00
beebe43176
gnu: sra-tools: Use "modify-phases" syntax.
...
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use "modify-phases"
syntax.
2017-04-05 18:06:51 +02:00
fc5b12879f
gnu: diamond: Update to 0.8.37.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.37.
2017-04-05 22:49:01 +10:00
52b2d666ca
gnu: kdevelop: Update to 5.1.0.
...
* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.0.
2017-04-05 12:12:34 +02:00
dfee7daedb
gnu: bc: Update to 1.07.
...
* gnu/packages/algebra.scm (bc): Update to 1.07.
[native-inputs]: Add ed and texinfo.
[arguments]: Use default ‘configure’ phase.
2017-04-05 03:31:58 +02:00
f0bacad682
gnu: bc: Actually use readline.
...
* gnu/packages/algebra.scm (bc)[arguments]: Add ‘--with-readline’
to #:configure-flags.
2017-04-05 03:31:58 +02:00
5894b60491
gnu: algebra: Re-order imports.
...
* gnu/packages/algebra.scm: Order imports alphabetically.
2017-04-05 03:31:58 +02:00
01fe019166
gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'.
...
* gnu/packages/graphics.scm (openexr)[arguments]: Add
'set-ilmbase-directory-in-pc-file' phase.
2017-04-05 00:53:03 +02:00
f84011d04a
services: cuirass: Wait for networking.
...
* gnu/services/cuirass.scm (cuirass-shepherd-service): Add 'networking'
to 'requirements'.
2017-04-05 00:53:03 +02:00
8db947169f
gnu: icecat: Use bundled ICU to avoid crashes.
...
* gnu/packages/gnuzilla.scm (icecat)[arguments] <#:configure-flags>:
Temporarily comment out "--with-system-icu".
2017-04-04 20:18:38 +02:00
cca906754d
gnu: icecat: Re-enable parallel build.
...
* gnu/packages/gnuzilla.scm (icecat)[arguments]: Re-enable parallel build.
2017-04-04 20:18:38 +02:00
33b2520175
gnu: python-django: Specify CPE name.
...
* gnu/packages/django.scm (python-django, python2-django)[properties]: Add
"cpe-name".
2017-04-04 18:30:52 +02:00
dcc9b6abc7
gnu: python-django: Update to 1.10.7 [fixes CVE-2017-7233 and CVE-2017-7234].
...
* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.7.
2017-04-04 18:01:32 +02:00
4dc12417d2
gnu: gnupg: Update to 2.1.20.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.20.
[source]: Remove patch.
* gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-04-04 17:46:28 +02:00
a3dea99107
gnu: python2-cython: Fix build on 32-bit platforms.
...
* gnu/packages/python.scm (python-cython, python2-cython)[source]: Add patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-04-04 17:46:28 +02:00
6beaa5a02a
gnu: moc: Add Ogg Vorbis support.
...
* gnu/packages/music.scm (moc)[inputs]: Add libogg and libvorbis.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-04-04 15:16:25 +02:00
0d78e37746
gnu: Add qjackctl.
...
* gnu/packages/audio.scm (qjackctl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-04 14:30:00 +02:00
b7506f74df
gnu: glog: Fix name demangling for GCC 5.
...
* gnu/packages/patches/glog-gcc-5-demangling.patch: New file.
* gnu/packages/logging.scm (glog)[sources]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-04-04 14:30:00 +02:00
f49ced6827
gnu: youtube-dl: Update to 2017.04.03.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.04.03.
2017-04-04 00:17:58 +02:00
f751b7596d
gnu: perl-email-simple: Update to 2.213.
...
* gnu/packages/mail.scm (perl-email-simple): Update to 2.213.
2017-04-04 00:17:58 +02:00
e26f2c67d6
gnu: perl-email-mime: Update to 1.940.
...
* gnu/packages/mail.scm (perl-email-mime): Update to 1.940.
2017-04-04 00:17:57 +02:00
153ea992e8
gnu: perl-lingua-en-tagger: Update to 0.28.
...
* gnu/packages/language.scm (perl-lingua-en-tagger): Update to 0.28.
2017-04-04 00:17:29 +02:00
5b5b4edfcc
gnu: perl-lingua-en-number-isordinal: Update to 0.05.
...
* gnu/packages/language.scm (perl-lingua-en-number-isordinal): Update to 0.05.
2017-04-04 00:17:29 +02:00
e2fb341f8f
gnu: perl-lingua-en-inflect-number: Update to 1.12.
...
* gnu/packages/language.scm (perl-lingua-en-inflect-number): Update to 1.12.
2017-04-04 00:17:29 +02:00
3581c3571a
gnu: perl-lingua-en-inflect: Update to 1.901.
...
* gnu/packages/language.scm (perl-lingua-en-inflect): Update to 1.901.
2017-04-04 00:17:28 +02:00
84f06e540c
gnu: perl-lingua-en-findnumber: Update to 1.32.
...
* gnu/packages/language.scm (perl-lingua-en-findnumber): Update to 1.32.
2017-04-04 00:17:28 +02:00
dd0cfb37da
gnu: perl-db-file: Update to 1.840.
...
* gnu/packages/databases.scm (perl-db-file): Update to 1.840.
2017-04-04 00:17:28 +02:00
2273b75154
gnu: perl-dbd-sqlite: Update to 1.54.
...
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.54.
2017-04-04 00:17:28 +02:00
4d40c6aab0
gnu: perl-dbd-pg: Update to 3.5.3.
...
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.5.3.
2017-04-04 00:17:28 +02:00
b98d4ec0aa
gnu: Add python-mando-0.3.1
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* gnu/packages/python.scm (python-mando-0.3.1): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-04 00:10:00 +02:00
b4dcfce51b
gnu: Add cifs-utils.
...
* gnu/packages/samba.scm (cifs-utils): New variable.
2017-04-03 21:45:53 +02:00
350a30845c
gnu: python-pexpect: Use python-pytest@3.0.
...
* gnu/packages/python.scm (python-pexpect, python2-pexpect)[native-inputs]:
Change PYTHON-PYTEST to PYTHON-PYTEST-3.0.
2017-04-03 19:25:57 +02:00
26bad5d7eb
gnu: nss, nss-certs: Update to 3.30.
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* gnu/packages/gnuzilla.scm (nss): Update to 3.30.
* gnu/packages/certs.scm (nss-certs): Update to 3.30.
* gnu/packages/patches/nss-increase-test-timeout.patch: Adjust patch context.
2017-04-03 19:25:57 +02:00
cd158a2b77
gnu: python-cython: Update to 0.25.2.
...
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.25.2.
2017-04-03 19:25:56 +02:00
9a49129651
gnu: audacity: Update to 2.1.3.
...
* gnu/packages/audacity.scm (audacity): Update to 2.1.3.
[source]: Fetch gzipped tar archive instead of a zip archive; remove
unnecessary patch.
[native-inputs]: Add autoconf, automake and libtool.
[arguments]: Add autoreconf phase to detect system libraries.
* gnu/packages/patches/audacity-fix-ffmpeg-binding.patch: Delete patch.
* gnu/local.mk: Remove reference to removed patch.
2017-04-03 11:51:52 -04:00
568f977f9c
gnu: emacs-elfeed: Enable tests.
...
* gnu/packages/emacs.scm (emacs-elfeed)[arguments]: Add a 'check' phase.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-02 23:08:55 -04:00
b53fa16f9c
gnu: brdf-explorer: Use HTTPS source URL.
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* gnu/packages/graphics.scm (brdf-explorer)[source]: Use HTTPS URL.
2017-04-02 20:00:52 -04:00
7bf837fd43
gnu: Use HTTPS URLs for GitHub home-pages.
...
* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm,
gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm,
gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm,
gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm,
gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on
GitHub.
2017-04-02 20:00:51 -04:00
9167488490
gnu: jbig2dec: Fix CVE-2016-9601.
...
* gnu/packages/patches/jbig2dec-CVE-2016-9601.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (jbig2dec)[source]: Use it.
2017-04-02 19:38:56 -04:00
2a0d5de5a9
Merge branch 'core-updates'
2017-04-03 00:13:06 +02:00
245575eaf3
gnu: guile-git: Install .go files to /site-ccache.
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* gnu/packages/guile.scm (guile-git)[arguments] <bootstrap>: Change
"/ccache" to "/site-ccache" in Makefile.am.
2017-04-03 00:12:51 +02:00
60f37e3cb1
gnu: sddm: Build without greenisland.
...
This Wayland compositor is currently abandonware and has known problems.
* gnu/packages/display-managers.scm (sddm)[inputs]: Remove GREENISLAND.
2017-04-02 23:42:56 +02:00
41f6d18fb6
gnu: guitarix: Update to 0.35.3.
...
* gnu/packages/audio.scm (guitarix): Update to 0.35.3.
2017-04-02 18:30:42 +02:00
6800c79701
gnu: notmuch: Update to 0.24.1.
...
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.24.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-04-02 11:58:08 +02:00
cf1d581464
gnu: khmer: Build with gcc-4.
...
* gnu/packages/bioinformatics.scm (khmer)[inputs]: Add gcc-4.9.
2017-04-02 10:14:17 +10:00
800a7dd59e
gnu: ruby: Replace with ruby-2.3.4.
...
* gnu/packages/ruby.scm (ruby)[replacement]: New field.
(ruby-2.3.4): New variable.
2017-04-02 08:21:43 +10:00
22a494ec25
gnu: ruby-2.2: Update to 2.2.7.
...
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.7.
2017-04-02 08:20:41 +10:00
750e54ecbe
gnu: tuxguitar: Update to 1.4.
...
* gnu/packages/music.scm (tuxguitar): Update to 1.4.
[arguments]: Replace build phase "build-editor-utils" with "build-libraries";
install resources to the expected locations.
2017-04-02 17:25:05 +02:00
8723fe23fa
gnu: pd: Run autogen.sh script.
...
* gnu/packages/music.scm (pd)[arguments]: Run autogen.sh instead of
plain autoreconf.
2017-04-02 17:25:05 +02:00
4712cbb0c7
gnu: pd: Fix indentation of phases.
...
* gnu/packages/music.scm (pd)[arguments]: Fix indentation.
2017-04-02 17:25:05 +02:00
037bf4f4a0
gnu: pd: Update to 0.47-1.
...
* gnu/packages/music.scm (pd): Update to 0.47-1.
2017-04-02 17:25:05 +02:00
Ricardo Wurmus