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14634 Commits

Author SHA1 Message Date
Ricardo Wurmus 10e479a7c0
gnu: r-genomicranges: Update to 1.24.3. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.3.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus 01ebbb1b76
gnu: r-limma: Update to 3.28.21. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.21.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus bbf53cb527
gnu: r-variantannotation: Update to 1.18.7. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.7.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus 4fa7091d54
gnu: r-genomeinfodb: Update to 1.8.7. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.7.
 2016-09-12 17:44:41 +02:00
Ricardo Wurmus 3b851cd4ac
gnu: r-seqinr: Update to 3.3-1. 
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-1.
[propagated-inputs]: Add "r-segmented".
 2016-09-12 17:44:41 +02:00
Ricardo Wurmus 3e4c0c6662
gnu: Add r-segmented. 
* gnu/packages/statistics.scm (r-segmented): New variable.
 2016-09-12 17:44:41 +02:00
Ricardo Wurmus 2b1cc79d98
gnu: r-s4vectors: Update to 0.10.3. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.3.
 2016-09-12 17:44:41 +02:00
Ricardo Wurmus 0b54b4c986
gnu: r-acsnminer: Update to 0.16.8.25. 
* gnu/packages/bioinformatics.scm (r-acsnminer): Update to 0.16.8.25.
 2016-09-12 17:44:41 +02:00
Ricardo Wurmus 2c575bb9a2
gnu: r-vegan: Update to 2.4-1. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-1.
 2016-09-12 17:44:40 +02:00
Ricardo Wurmus 02a87536bf
gnu: r-curl: Update to 1.2. 
* gnu/packages/web.scm (r-curl): Update to 1.2.
 2016-09-12 17:44:40 +02:00
Ricardo Wurmus cc1446acc7
gnu: r-htmlwidgets: Update to 0.7. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.7.
 2016-09-12 17:44:40 +02:00
Ricardo Wurmus 4df0cb8d05
gnu: r-jsonlite: Update to 1.0. 
* gnu/packages/web.scm (r-jsonlite): Update to 1.0.
 2016-09-12 17:44:40 +02:00
Ricardo Wurmus ccd9b1511e
gnu: r-pracma: Update to 1.9.5. 
* gnu/packages/maths.scm (r-pracma): Update to 1.9.5.
[propagated-inputs]: Add "r-quadprog".
 2016-09-12 17:44:40 +02:00
Ricardo Wurmus 2d047896f9
gnu: Add r-quadprog. 
* gnu/packages/maths.scm (r-quadprog): New variable.
 2016-09-12 17:44:40 +02:00
John Darrington 39fb629535
gnu: (cfitsio, wcslib): Change return values of custom phases. 
* gnu/packages/astronomy.scm (cfitsio, wcslib): Return #t from patch phases.
 2016-09-12 17:35:03 +02:00
Andreas Enge 378920defc
gnu: python-django: Add patch file. 
* gnu/packages/patches/python-django-fix-testcase.patch: New file.

This is a follow-up to commit d18197af78.
 2016-09-12 17:27:33 +02:00
Marius Bakke ac8a642886
gnu: tre: Move to (gnu packages regex). 
* gnu/packages/tre.scm: Remove.  Move 'tre' to...
* gnu/packages/regex.scm (tre): ... here.  New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-09-12 16:38:03 +03:00
ng0 f32ffa04ba
gnu: emacs: Use https for elpa.gnu.org. 
* gnu/packages/emacs.scm: Use 'https' for all elpa.gnu.org URLs.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-09-12 16:38:03 +03:00
Hartmut Goebel b53fc2940f
gnu: Add python-django-simple-math-captcha. 
* gnu/packages/django.scm: (python-django-simple-math-captcha)
(python2-django-simple-math-captcha): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-12 15:27:46 +02:00
Hartmut Goebel d18197af78
gnu: Add python-django. 
* gnu/packages/django.scm: New file.
* gnu/packages/patches/python-django-fix-testcase.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add django.scm.
(dist_patch_DATA): Add python-django-fix-testcase.patch.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-12 15:27:46 +02:00
Efraim Flashner 57dbf577f0
gnu: parallel: Update to 20160822. 
* gnu/packages/parallel.scm (parallel): Update to 20160822.
 2016-09-12 12:59:13 +03:00
Efraim Flashner 44177bc040
gnu: vapoursynth: Update to 33.1. 
* gnu/packages/video.scm (vapoursynth): Update to 33.1.
 2016-09-12 12:30:19 +03:00
ng0 b6337f30cc
gnu: tbb: Update to 2017. 
* gnu/packages/tbb.scm (tbb): Update to 2017.
[license]: Change to ASL2.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-09-12 10:37:39 +03:00
Ludovic Courtès 8d4169a1d1
gnu: Add Impressive. 
* gnu/packages/pdf.scm (impressive): New variable.
 2016-09-12 00:57:46 +02:00
Ludovic Courtès 55fb8d7485
gnu: texinfo: Add 6.3. 
* gnu/packages/texinfo.scm (texinfo-6.3): New variable.
 2016-09-11 23:44:24 +02:00
Leo Famulari ee6bc65f7c
gnu: mpd: Remove unused glib-or-gtk-build-system module. 
* gnu/packages/mpd.scm (define-module): Don't import
'glib-or-gtk-build-system'.
 2016-09-11 14:11:08 -04:00
ng0 aeca1c0ec5
gnu: Add pybitmessage. 
* gnu/packages/messaging.scm (pybitmessage): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-09-11 20:57:05 +03:00
ng0 29e83e1c70
gnu: messaging: Use license: prefix. 
* gnu/packages/disk.scm (define-module): Import guix licenses with a prefix.
(libotr): Use the license prefix.
(bitlbee): Likewise.
(hexchat): Likewise.
(ngircd): Likewise.
(pidgin): Likewise.
(pidgin-otr): Likewise.
(znc): Likewise.
(python-nbxmpp): Likewise.
(gajim): Likewise.
(prosody): Likewise.
(libtoxcore): Likewise.
(utox): Likewise.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-09-11 20:55:34 +03:00
ng0 6d8e14d0ba
gnu: Add python2-pyqt-4. 
* gnu/packages/qt.scm (python2-pyqt-4): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-09-11 20:49:22 +03:00
Leo Famulari 4d4a6ed775
gnu: zimg: Update to 2.2.1. 
* gnu/packages/image.scm (zimg): Update to 2.2.1.
 2016-09-11 13:04:00 -04:00
Leo Famulari 35eade9cf3
gnu: jbig2dec: Update to 0.13. 
* gnu/packages/image.scm (jbig2dec): Update to 0.13.
[source]: Update URL.
[home-page]: Update URL.
* gnu/packages/patches/jbig2dec-ignore-testtest.patch: Adjust patch.
 2016-09-11 13:04:00 -04:00
Leo Famulari cbe2cc02fb
gnu: jpegoptim: Update to 1.4.4. 
* gnu/packages/image.scm (jpegoptim): Update to 1.4.4.
 2016-09-11 13:04:00 -04:00
David Craven 2932ab9ca4
install: Use login-service. 
* gnu/system/install.scm (installation-services): Use login-service.
 2016-09-11 18:54:13 +02:00
Leo Famulari 9f20f7f841
gnu: libupnp: Update to 1.6.20. 
* gnu/packages/libupnp.scm (libupnp): Update to 1.6.20.
 2016-09-11 11:31:40 -04:00
Christopher Baines 6c86cef5d3
gnu: Add sonata 
* gnu/packages/mpd.scm (sonata): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-11 11:07:19 -04:00
David Craven 46ec2707a4
services: Add kmscon service. 
* gnu/services/base.scm (<kmscon-configuration>, kmscon-service-type):
  New variables.
* doc/guix.texi (@deffn kmscon-service-type, @deftp
  kmscon-configuration): Add documentation.
 2016-09-11 16:29:45 +02:00
David Craven 317d3b474a
services: Add login-service. 
* gnu/services/base.scm (%default-motd, <login-configuration>,
  login-pam-service, login-serivce-type, login-service): New variables.
  (<mingetty-configuration>, mingetty-shepherd-service,
  mingetty-serivce-type): Remove motd. Remove allow-empty-passwords?.
  Remove mingetty-pam-service.
  (%base-services): Add login-service. Remove motd.
 2016-09-11 16:29:45 +02:00
Clément Lassieur 381000d794
gnu: python-git-review: Wrap it so 'git', 'ssh' and 'scp' are found. 
* gnu/packages/openstack.scm (python-git-review)[arguments]: Add
'wrap-program' phase.
[inputs]: Add openssh.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-09-11 10:01:18 +03:00
Efraim Flashner 90d8ef6bcb
gnu: gnunet: Use 'modify-phases'. 
* gnu/packages/gnunet.scm (gnunet)[arguments]: Use 'modify-phases'.
 2016-09-11 09:08:10 +03:00
Efraim Flashner b9fe72bf4d
gnu: gnurl: Use 'modify-phases'. 
* gnu/packages/gnunet.scm (gnurl)[arguments]: Use 'modify-phases'.
 2016-09-11 09:06:02 +03:00
ng0 c543b4e1d3
gnu: gnurl: Update to 7.50.2-1. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.50.2-1.
[arguments]: Remove 'delete-failing-test1139 phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-09-11 08:55:19 +03:00
Leo Famulari 5f4d09b52c
gnu: go-1.7: Update to 1.7.1. 
* gnu/packages/golang.scm (go-1.7): Update to 1.7.1.
 2016-09-11 01:23:34 -04:00
Mark H Weaver 7c1fedd0d7
gnu: linux-libre: Update to 4.7.3. 
* gnu/packages/linux.scm (linux-libre): Update to 4.7.3.
 2016-09-10 22:11:21 -04:00
Mark H Weaver 5ed67c812f
gnu: linux-libre@4.4: Update to 4.4.20. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.20.
 2016-09-10 22:11:19 -04:00
Mark H Weaver 4bf184caa4
gnu: linux-libre@4.1: Update to 4.1.32. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.32.
 2016-09-10 22:11:12 -04:00
宋文武 cab1760de2
gnu: icedtea-8: Hardcode dynamically loaded libraries. 
Fixes <https://bugs.gnu.org/24327>.

* gnu/packages/java.scm (icedtea-8)[arguments]: Add 'patch-jni-libs' phase.
 2016-09-11 10:10:11 +08:00
Ben Woodcroft dd4476214c
gnu: python-cachecontrol: Correct parentheses. 
This commit is a follow-up to 'b30565b'.

* gnu/packages/python.scm (python-cachecontrol): Correct parentheses.
 2016-09-11 11:32:45 +10:00
Marius Bakke b30565bd8a
gnu: Add python-cachecontrol. 
* gnu/packages/python.scm (python-cachecontrol, python2-cachecontrol):
  New variables.
 2016-09-11 09:48:54 +10:00
Leo Famulari debf4179b4
gnu: python-pillow: Update to 3.3.1. 
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.3.1.
 2016-09-10 18:37:34 -04:00
Marius Bakke 84be3b9920
gnu: Add mash. 
* gnu/packages/bioinformatics.scm (mash): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-10 17:41:38 -04:00