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31725 Commits

Author SHA1 Message Date
Marius Bakke 8f8bc40677
gnu: VTK: Update to 8.2.0. 
* gnu/packages/image-processing.scm (vtk): Update to 8.2.0.
 2019-01-31 20:57:21 +01:00
Marius Bakke f1d4f264a2
gnu: VTK: Use HTTPS URLs. 
* gnu/packages/image-processing.scm (vtk)[source, home-page]: Use HTTPS.
 2019-01-31 20:57:21 +01:00
Marius Bakke 3cf3255796
gnu: whois: Update to 5.4.1. 
* gnu/packages/networking.scm (whois): Update to 5.4.1.
 2019-01-31 20:57:21 +01:00
Marius Bakke 8f22bf9e6d
gnu: json-modern-cxx: Fetch from git. 
* gnu/packages/cpp.scm (json-modern-cxx)[source]: Use GIT-FETCH.
[source](snippet): End on #t.
 2019-01-31 20:57:21 +01:00
Marius Bakke 0a3849f610
gnu: httpd: Update to 2.4.38. 
* gnu/packages/web.scm (httpd): Update to 2.4.38.
 2019-01-31 20:57:21 +01:00
Marius Bakke 71cb7512c4
gnu: libwebp: Update to 1.0.2. 
* gnu/packages/image.scm (libwebp): Update to 1.0.2.
 2019-01-31 20:57:21 +01:00
Marius Bakke 39855bfef1
gnu: p11-kit: Update to 0.23.15. 
* gnu/packages/patches/p11-kit-jks-timestamps.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.15.
[source](patches): New field.
 2019-01-31 20:57:21 +01:00
Marius Bakke 7c56237b4c
gnu: i3-wm: Update to 4.16.1. 
* gnu/packages/wm.scm (i3-wm): Update to 4.16.1.
 2019-01-31 20:57:21 +01:00
Marius Bakke b8c0b9c1a3
gnu: msmtp: Update to 1.8.2. 
* gnu/packages/mail.scm (msmtp): Update to 1.8.2.
 2019-01-31 20:57:21 +01:00
Efraim Flashner 9117d6df87
gnu: tcc: Fix building on armhf-linux. 
* gnu/packages/c.scm (tcc)[arguments]: Add 'configure-flag to set the
triplet when building for armhf-linux.
 2019-01-31 18:39:19 +02:00
Efraim Flashner 0270b24b65
gnu: tcc: Mark aarch64-linux as supported. 
* gnu/packages/c.scm (tcc)[supported-systems]: Remove aarch64.
 2019-01-31 17:47:44 +02:00
Ricardo Wurmus 740a335558
gnu: Remove xboing. 
* gnu/packages/games.scm (xboing): Remove variable.
 2019-01-31 16:29:53 +01:00
Ricardo Wurmus 395a95bb75
gnu: guile-hall: Wrap with guile-config. 
* gnu/packages/guile-xyz.scm (guile-hall)[arguments]: Extend
"hall-wrap-binaries" phase to include guile-config in the load path.
 2019-01-31 16:26:22 +01:00
Andreas Enge adba64662c
gnu: Add python-cypari2 and python2-cypari2. 
* gnu/packages/sagemath.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register new module.
 2019-01-31 14:58:47 +01:00
Leo Famulari 11d19ca236
gnu: QEMU: Fix CVE-2018-16872 and CVE-2019-6778. 
* gnu/packages/patches/qemu-CVE-2018-16872.patch,
gnu/packages/patches/qemu-CVE-2019-6778.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
 2019-01-31 14:35:48 +01:00
Arun Isaac a382860bd4
gnu: rss-bridge: Update to 2019-01-13. 
* gnu/packages/web.scm (rss-bridge): Update to 2019-01-13.
[source]: Use git-fetch.
[native-inputs]: Remove gzip and tar.
 2019-01-31 16:27:39 +05:30
Rutger Helling e1c3ffcfcd
gnu: scdoc: Update to 1.8.1. 
* gnu/packages/man.scm (scdoc): Update to 1.8.1.
 2019-01-31 10:09:29 +01:00
Nicolas Goaziou 2e484e78cd
gnu: mame: Update to 0.206. 
* gnu/packages/emulators.scm (mame): Update to 0.206.
 2019-01-30 22:59:44 +01:00
Kei Kebreau 0dcea35d9a
gnu: Add lhasa. 
* gnu/packages/compression.scm (lhasa): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-01-30 21:24:01 +01:00
Ricardo Wurmus ba123b6dda
gnu: star: Update to 2.7.0a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.7.0a.
 2019-01-30 15:44:47 +01:00
Mark H Weaver 24886c1389
gnu: icecat: Update to 60.5.0-guix1 [security-fixes]. 
Includes fixes for CVE-2018-18500, CVE-2018-18501, and CVE-2018-18505.

* gnu/packages/gnuzilla.scm (icecat): Update to 60.5.0-guix1.
[version]: Use %icecat-version.
[source]: Inherit from 'icecat-source'.  Remove obsolete patches.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch,
gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch,
gnu/packages/patches/icecat-use-system-media-libs.patch: Adapt to 60.5.0.
 2019-01-29 22:29:42 -05:00
Mark H Weaver 948879eeda
gnu: icecat: Add icecat-source. 
* gnu/packages/gnuzilla.scm (computed-origin-method): New variable.
(%icecat-version, icecat-source): New variables.
* gnu/packages/patches/icecat-makeicecat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-01-29 22:29:40 -05:00
Ludovic Courtès 286bea0dba
gnu: clang-runtime@3.5: Fix compilation on glibc 2.28. 
Reported by zimoun <zimon.toutoune@gmail.com>.

* gnu/packages/llvm.scm (clang-runtime-3.5): Add
"clang-3.5-libsanitizer-ustat-fix.patch".
 2019-01-29 23:46:33 +01:00
Ludovic Courtès b552e307ed
gnu: guile-commonmark: Update to 0.1.2. 
* gnu/packages/guile-xyz.scm (guile-commonmark): Update to 0.1.2.
[source](modules, snippet): Remove.
 2019-01-29 23:46:33 +01:00
Ludovic Courtès db9771a9a9
gnu: guile-git: Update to 0.2.0. 
* gnu/packages/guile.scm (guile-git): Update to 0.2.0.
 2019-01-29 23:46:33 +01:00
Leo Famulari f5eb570c59
gnu: Mutt: Update to 1.11.2. 
* gnu/packages/mail.scm (mutt): Update to 1.11.2.
 2019-01-29 15:52:33 -05:00
Ricardo Wurmus 631337063e
gnu: Add texlive-latex-beamer. 
* gnu/packages/tex.scm (texlive-latex-beamer): New variable.
 2019-01-29 17:18:23 +01:00
Ricardo Wurmus 1d4c2dabef
gnu: texlive-latex-seminar: Copy files to output. 
* gnu/packages/tex.scm (texlive-latex-seminar)[build-system]: Use
trivial-build-system.
[arguments]: Copy files to output.
 2019-01-29 14:07:03 +01:00
Mathieu Lirzin 9e532ae22a
gnu: clojure: Update to 1.10.0. 
* gnu/packages/clojure.scm (clojure): Update to 1.10.0.
[source]: Use 'git-fetch'.
 2019-01-29 10:59:06 +01:00
Rutger Helling b412ddcb1a
gnu: kitty: Update to 0.13.3. 
* gnu/packages/terminals.scm (kitty): Update to 0.13.3.
[inputs]: Replace python2-pygments with python-pygments. Add wayland.
[arguments]: Add 'hard-code-libegl phase.
 2019-01-29 10:10:06 +01:00
Efraim Flashner 23c2598233
gnu: x265: Update to 3.0. 
* gnu/packages/video.scm (x265): Update to 3.0.
[source]: Remove patch.
* gnu/packages/patches/x265-detect512-all-arches.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-01-29 10:07:58 +02:00
Ludovic Courtès db7c901af1
gnu: guix: Update to 4bddd12. 
* gnu/packages/package-management.scm (guix): Update to 4bddd12.
 2019-01-28 23:52:20 +01:00
Gábor Boskovits 95bc85b7da
gnu: Add openjdk 11. 
* gnu/packages/java.scm (openjdk11): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-28 23:15:27 +01:00
Meiyo Peng 4bddd12ad5
gnu: fish: Use fish-foreign-env to source /etc/profile. 
* gnu/packages/shells.scm (fish): Use fish-foreign-env to source /etc/profile
  when user logs in.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-28 23:13:41 +01:00
Meiyo Peng 1d962fc0a1
gnu: Add fish-foreign-env. 
* gnu/packages/shells.scm (fish-foreign-env): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-28 23:13:41 +01:00
Meiyo Peng e1dba5bea0
gnu: fish: Update to 3.0.0. 
* gnu/packages/shells.scm (fish): Update to 3.0.0.
  [source]: Remove dead URL.
  [inputs]: Remove bc.  Replace python-wrapper with python.
  [arguments]: Remove configure-flags.  Enable fish to source
  /etc/fish/config.fish.  Enable completions, functions and configurations
  in user's and system's guix profiles.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-28 23:13:41 +01:00
Ludovic Courtès f15800946d
gnu: youtube-dl: Update to 2019.01.27. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.27.
 2019-01-28 23:13:40 +01:00
Ricardo Wurmus 5a23696a47
gnu: fastcap: Fix build and use INVOKE. 
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive-tiny
with a texlive-union including texlive-fonts-amsfonts.
[arguments]: Use INVOKE in build phases.
 2019-01-28 20:30:20 +01:00
Ricardo Wurmus ad34338d1e
gnu: scons: Update to 3.0.3. 
Fixes <https://bugs.gnu.org/34236>.

* gnu/packages/python-xyz.scm (scons): Update to 3.0.3.
[arguments]: Add "bootstrap" phase.
 2019-01-28 20:09:51 +01:00
Ricardo Wurmus 1d1e3676ba
gnu: r-genomicfeatures: Update to 1.34.2. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.2.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus ea0eaf537a
gnu: r-variantannotation: Update to 1.28.10. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.10.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus df00ca25bc
gnu: r-rmpfr: Update to 0.7-2. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.7-2.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 61cb2e3133
gnu: r-waveslim: Update to 1.7.5.1. 
* gnu/packages/cran.scm (r-waveslim): Update to 1.7.5.1.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 0207ad9ee8
gnu: r-activity: Update to 1.2. 
* gnu/packages/cran.scm (r-activity): Update to 1.2.
[propagated-inputs]: Remove r-overlap.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 211628044e
gnu: r-emmeans: Update to 1.3.2. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.2.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 62595ee342
gnu: r-th-data: Update to 1.0-10. 
* gnu/packages/cran.scm (r-th-data): Update to 1.0-10.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus ddd168ff32
gnu: r-acceptancesampling: Update to 1.0-6. 
* gnu/packages/cran.scm (r-acceptancesampling): Update to 1.0-6.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 7d4b98181a
gnu: r-vioplot: Update to 0.3.0. 
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.0.
[propagated-inputs]: Add r-zoo.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus b4b1a9440b
gnu: r-jomo: Update to 2.6-6. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-6.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 9e0162df85
gnu: r-fitdistrplus: Update to 1.0-14. 
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-14.
 2019-01-28 16:27:34 +01:00