Commit Graph

34617 Commits

Author SHA1 Message Date
Marius Bakke 3b3fd90377
gnu: elogind: Update to 241.2.
* gnu/packages/freedesktop.scm (elogind): Update to 241.2.
2019-03-31 21:26:16 +02:00
Marius Bakke 4f0464c923
gnu: whois: Update to 5.4.2.
* gnu/packages/networking.scm (whois): Update to 5.4.2.
2019-03-31 21:26:16 +02:00
Marius Bakke 32deef23f6
gnu: libssh2: Update to 1.8.2.
* gnu/packages/ssh.scm (libssh2): Update to 1.8.2.
2019-03-31 21:26:16 +02:00
Marius Bakke 5089ebc3a3
gnu: GnuPG: Update to 2.2.15.
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.15.
2019-03-31 21:26:16 +02:00
Marius Bakke 5cc013f05d
gnu: leveldb: Update to 1.21.
* gnu/packages/databases.scm (leveldb): Update to 1.21.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
2019-03-31 21:26:15 +02:00
Marius Bakke ad7c77fd75
gnu: leveldb: Don't use unstable tarball.
* gnu/packages/databases.scm (leveldb)[source]: Use GIT-FETCH.
2019-03-31 21:26:15 +02:00
Ivan Petkov d7d3bdca89
gnu: rust: Update to 1.32.0.
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.31): ...this.
(rust): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-31 21:11:55 +02:00
Brett Gilio ccbaeba38e
gnu: python-language-server: Update to 0.26.1.
* gnu/packages/python-xyz.scm (python-language-server): Update to 0.26.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-03-31 21:16:17 +03:00
Efraim Flashner 36a4366d79
gnu: Fix descriptions to not use quotes.
* gnu/packages/admin.scm (wpa-supplicant-minimal, mingetty, di),
* gnu/packages/audio.scm (fil-plugins),
* gnu/packages/base.scm (make-ld-wrapper, make-glibc-locales),
* gnu/packages/bioinformatics.scm (r-samtools),
* gnu/packages/chez.scm (chez-mit),
* gnu/packages/commencement.scm (make-gcc-toolchain),
* gnu/packages/compression.scm (fastjar),
* gnu/packages/cran.scm (r-maps, r-rcpp),
* gnu/packages/databases.scm (sparql-query),
* gnu/packages/dunst.scm (dunst),
* gnu/packages/ftp.scm (ncftp),
* gnu/packages/gl.scm (freeglut),
* gnu/packages/haskell-check.scm (ghc-tasty-golden),
* gnu/packages/haskell.scm (ghc-case-insensitive, ghc-text,
ghc-haskell-src, ghc-syb, ghc-deepseq-generics, ghc-network-uri,
ghc-rerebase, ghc-zlib),
* gnu/packages/image.scm (jbig2dec),
* gnu/packages/kde-frameworks.scm (kinit, karchive),
* gnu/packages/linux.scm (wireless-tools, perf, module-init-tools, kbd),
* gnu/packages/lirc.scm (lirc),
* gnu/packages/lisp.scm (uglify-js),
* gnu/packages/mate.scm (mate-netbook),
* gnu/packages/microcom.scm (microcom),
* gnu/packages/music.scm (bristol),
* gnu/packages/networking.scm (perl-geo-ip),
* gnu/packages/patchutils.scm (patches),
* gnu/packages/perl-check.scm (perl-test-more-utf8),
* gnu/packages/perl.scm (perl-log-report-optional, perl-file-which,
perl-io-tty, perl-log-any, perl-digest-sha1, perl-class-load,
perl-regexp-common, perl-module-pluggable, perl-class-modifier),
* gnu/packages/python-xyz.scm (python-backports-abc, python-natsort),
* gnu/packages/samba.scm (iniparser),
* gnu/packages/search.scm (mlocate),
* gnu/packages/spice.scm (spice),
* gnu/packages/statistics.scm (r-dt, r-lubridate, r-estimability,
r-commonmark, r-digest, r-viridislite, r-stringr),
* gnu/packages/tex.scm (texlive-latex-changebar),
* gnu/packages/version-control.scm (subversion),
* gnu/packages/w3m.scm (w3m),
* gnu/packages/web.scm (perl-http-parser,
perl-plack-middleware-reverseproxy),
* gnu/packages/xorg.scm (xkeyboard-config, mkfontdir, xcursor-theme,
mkfontscale, xinit, font-alias)[description]: Use @code instead of quotes.
2019-03-31 20:51:10 +03:00
Tobias Geerinckx-Rice cd9ca20a5d
gnu: znc: Update to 1.7.3.
* gnu/packages/messaging.scm (znc): Update to 1.7.3.
2019-03-31 16:05:18 +02:00
Nicolas Goaziou ad4f644226
gnu: Add flare.
* gnu/packages/games.scm (flare-engine, flare-game): New variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2019-03-31 10:35:31 +08:00
Leo Famulari 6d3e149f10
gnu: dovecot: Update to 2.3.5.1 [fixes CVE-2019-7524].
* gnu/packages/mail.scm (dovecot): Update to 2.3.5.1.
2019-03-30 15:57:13 -04:00
Leo Famulari 6e1f91d91c
gnu: khal: Update to 0.10.0.
* gnu/packages/calendar.scm (khal): Update to 0.10.0.
[native-inputs]: Replace tzdata with tzdata-for-tests.
[arguments]: Simplify the check phase.
2019-03-30 15:10:19 -04:00
Ludovic Courtès e23f2ff183
gnu: Rename "gnubackgammon" back to "gnubg".
This reverts c97e4d8bbe, which was not
consensual and broke 'tests/guix-package.sh'.

* gnu/packages/games.scm (gnubackgammon): Rename to...
(gnubg): ... this, and rename the 'gnubg' deprecated alias to
'gnubackgammon'.
2019-03-30 15:19:32 +01:00
Ludovic Courtès 329c3c323e
gnu: guile: Remove version 2.0.13.
This package was unused since 0991fd5336.

* gnu/packages/guile.scm (guile-2.0.13): Remove.
2019-03-30 15:19:32 +01:00
Ludovic Courtès 528ea990c3
gnu: Use 'this-package' as a native input instead of 'self-native-input?'.
* gnu/packages/file.scm (file)[self-native-input?]: Remove.
[native-inputs]: New field.
* gnu/packages/guile.scm (guile-1.8)[self-native-input?]: Remove.
[native-inputs]: New field.
(guile-2.0)[self-native-input?]: Remove.
[native-inputs]: Add THIS-PACKAGE when (%current-target-system) is true.
* gnu/packages/ncurses.scm (ncurses)[self-native-input?]: Remove.
[native-inputs]: Add THIS-PACKAGE when (%current-target-system) is true.
* gnu/packages/python-xyz.scm (python-file)[self-native-input?]: Remove.
[native-inputs]: New field.
2019-03-30 15:19:32 +01:00
Timothy Sample 398747f8f1
gnu: gnome-shell: Remove gnome-control-center from inputs.
* gnu/packages/gnome.scm (gnome-shell)[inputs]: Remove
gnome-control-center.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-30 15:19:32 +01:00
Timothy Sample da43d1cb32
gnu: evolution-data-server: Add 'libedataserverui' output.
gnu/packages/gnome.scm (evolution-data-server)[outputs]: Add
'libedataserverui'.
[arguments]: Add phases so that only libedataserverui is linked with
WebKitGTK, and that it is moved to its own output.
(evolution, gnome-calendar, gnome-todo)[inputs]: Add libedataserverui.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-30 15:19:31 +01:00
Timothy Sample 14c297fde1
gnu: gnome-online-accounts: Split off 'lib' output.
gnu/packages/gnome.scm (gnome-online-accounts)[outputs]: Add 'lib'.
[arguments]: Set the 'libdir' path to the 'out' output, and add a phase
to ensure that libgoa gets installed in the 'lib' output.
(evolution-data-server, gfbgraph, gnome-calendar, gnome-control-center,
gnome-todo, libgdata, libzapojit): Use the 'lib' output of
gnome-online-accounts.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-30 15:19:31 +01:00
Brian Leung 29a9eb9e1a
gnu: Add emacs-counsel-projectile.
* gnu/packages/emacs-xyz.scm (emacs-counsel-projectile): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-03-30 17:03:57 +03:00
Rutger Helling 03a33eee72
gnu: wine-staging: Update to 4.5.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.5.
* gnu/packages/wine.scm (wine-staging): Update to 4.5.
2019-03-30 14:58:36 +01:00
Ludovic Courtès adb6462c4c
packages: Define 'this-package' and 'this-origin'.
* guix/packages.scm (<origin>): Choose 'this-origin' as the 'this'
identifier.
(<package>): Choose 'this-package'.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Use 'this-package'
instead of 'this-record'.
* gnu/packages/version-control.scm (git)[arguments]: Likewise.
2019-03-30 11:08:39 +01:00
Ricardo Wurmus ec12e53736
gnu: Add r-xcms.
* gnu/packages/bioconductor.scm (r-xcms): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus c8310056f4
gnu: Add r-massspecwavelet.
* gnu/packages/bioconductor.scm (r-massspecwavelet): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus 50d9177051
gnu: Add r-xbseq.
* gnu/packages/bioconductor.scm (r-xbseq): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus a6e1eb1a96
gnu: Add r-roar.
* gnu/packages/bioconductor.scm (r-roar): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus 98a2af31a8
gnu: Add r-yarn.
* gnu/packages/bioconductor.scm (r-yarn): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 59cf26292f
gnu: Add r-quantro.
* gnu/packages/bioconductor.scm (r-quantro): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 8d1990d495
gnu: Add r-downloader.
* gnu/packages/cran.scm (r-downloader): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus f562c90aa8
gnu: Add r-yaqcaffy.
* gnu/packages/bioconductor.scm (r-yaqcaffy): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 4675b3cfa3
gnu: Add r-simpleaffy.
* gnu/packages/bioconductor.scm (r-simpleaffy): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus e99380d67b
gnu: Add r-gcrma.
* gnu/packages/bioconductor.scm (r-gcrma): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 303f2ed1c6
gnu: Add r-yapsa.
* gnu/packages/bioconductor.scm (r-yapsa): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 28098414d0
gnu: Add r-somaticsignatures.
* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 398c4a9347
gnu: Add r-gtrellis.
* gnu/packages/bioconductor.scm (r-gtrellis): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 9563dd5599
gnu: Add r-pmcmr.
* gnu/packages/cran.scm (r-pmcmr): New variable.
2019-03-30 08:55:45 +01:00
Mark H Weaver bc91562939
gnu: gtk+: Graft upstream fix for crashes in Emacs and IceCat.
Fixes <https://bugs.gnu.org/34454>.

* gnu/packages/patches/gtk3-fix-deprecation-macro-use.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+/fixed): New variable.
(gtk+)[replacement]: New field.
2019-03-30 02:34:24 -04:00
Tobias Geerinckx-Rice c948cf9092
gnu: Add font-iosevka-slab.
The ’slab’ variants of Iosevka were moved to a separate archive with
version 2.0.0.

* gnu/packages/fonts.scm (font-iosevka-slab): New public variable.
2019-03-29 21:09:11 +01:00
Tobias Geerinckx-Rice 785747a974
gnu: font-iosevka: Update to 2.2.0.
* gnu/packages/fonts.scm (font-iosevka): Update to 2.2.0.
2019-03-29 21:00:23 +01:00
Ricardo Wurmus 51e98f7e0f
gnu: Add r-yamss.
* gnu/packages/bioconductor.scm (r-yamss): New variable.
2019-03-29 19:28:11 +01:00
Ricardo Wurmus 5cfa4bff69
gnu: Add r-ebimage.
* gnu/packages/bioconductor.scm (r-ebimage): New variable.
2019-03-29 19:28:03 +01:00
Ricardo Wurmus ffe7029bab
gnu: Add r-aucell.
* gnu/packages/bioconductor.scm (r-aucell): New variable.
2019-03-29 18:10:46 +01:00
Ricardo Wurmus f31e10f82e
gnu: Add r-allelicimbalance.
* gnu/packages/bioconductor.scm (r-allelicimbalance): New variable.
2019-03-29 18:07:17 +01:00
Ricardo Wurmus adf7d8135b
gnu: Add r-annotationtools.
* gnu/packages/bioconductor.scm (r-annotationtools): New variable.
2019-03-29 18:05:45 +01:00
Ricardo Wurmus 0b91b7b969
gnu: Add r-annotationfuncs.
* gnu/packages/bioconductor.scm (r-annotationfuncs): New variable.
2019-03-29 17:49:54 +01:00
Ricardo Wurmus 9bf4bb19c9
gnu: Add r-abaenrichment.
* gnu/packages/bioconductor.scm (r-abaenrichment): New variable.
2019-03-29 17:46:33 +01:00
Ricardo Wurmus 3972cfce6a
gnu: Add r-gofuncr.
* gnu/packages/bioconductor.scm (r-gofuncr): New variable.
2019-03-29 17:46:33 +01:00
Ricardo Wurmus 692bce1595
gnu: Add r-abadata.
* gnu/packages/bioconductor.scm (r-abadata): New variable.
2019-03-29 17:46:33 +01:00
Ricardo Wurmus 1fab2cf811
gnu: Add r-mapplots.
* gnu/packages/cran.scm (r-mapplots): New variable.
2019-03-29 17:43:25 +01:00
Ricardo Wurmus 32e0f906d7
gnu: Add r-atacseqqc.
* gnu/packages/bioconductor.scm (r-atacseqqc): New variable.
2019-03-29 17:13:45 +01:00
Ricardo Wurmus e5bff3079d
gnu: Add r-genomicscores.
* gnu/packages/bioconductor.scm (r-genomicscores): New variable.
2019-03-29 17:13:45 +01:00
Ricardo Wurmus 2a72ef561b
gnu: Add r-motifstack.
* gnu/packages/bioconductor.scm (r-motifstack): New variable.
2019-03-29 17:13:45 +01:00
Ricardo Wurmus 229f97c37a
gnu: Add r-motiv.
* gnu/packages/bioconductor.scm (r-motiv): New variable.
2019-03-29 17:13:45 +01:00
Ricardo Wurmus 051e8e1a5b
gnu: Add r-rgadem.
* gnu/packages/bioconductor.scm (r-rgadem): New variable.
2019-03-29 17:13:45 +01:00
Ricardo Wurmus c54ab337bc
gnu: Add r-preseqr.
* gnu/packages/cran.scm (r-preseqr): New variable.
2019-03-29 17:13:45 +01:00
Ricardo Wurmus 41aab7d186
gnu: Add r-bacon.
* gnu/packages/bioconductor.scm (r-bacon): New variable.
2019-03-29 17:13:41 +01:00
Ludovic Courtès 9398152ad1
gnu: php: Fix typo.
Regression introduced in e8cfce439a.

* gnu/packages/php.scm (php)[arguments]: Add missing 'else' branch of
the 'if'.  Change first argument to 'string-prefix?' to match GNU
triplets as well.
2019-03-29 15:35:54 +01:00
Efraim Flashner 8339ccac5f
gnu: python-faiss: Fix building on non-Intel architectures.
* gnu/packages/graph.scm (python-faiss)[arguments]: Adjust custom
'build-swig phase to change build flags for different archictures.
2019-03-29 17:08:05 +03:00
Efraim Flashner 3776dc094c
gnu: faiss: Fix building on non-Intel architectures.
* gnu/packages/graph.scm (faiss)[source]: Add snippet to wrap Intel
specific headers.
[arguments]: Adjust custom 'prepare-build phase to adjust compile flags
for different architectures.
2019-03-29 17:08:02 +03:00
Ricardo Wurmus 4774677228
gnu: stepmania: Fix all instances of accessing application data.
This is a follow-up to commit 45aba232ab.

* gnu/packages/games.scm (stepmania)[arguments]: Rename phase
ensure-gtk-module-can-be-found to ensure-application-files-can-be-found and
fix remaining instances of application data access.
2019-03-29 14:14:19 +01:00
Leo Famulari 47131ebbc9
gnu: Stellarium: Update to 0.19.0.
* gnu/packages/astronomy.scm (stellarium): Update to 0.19.0.
[arguments]: Remove obsolete 'patch-tests' phase.
2019-03-29 02:37:28 -04:00
Ricardo Wurmus 45aba232ab
gnu: stepmania: Fix loading of gtk module.
Fixes <https://bugs.gnu.org/34854>.

Suggested by Nicolas Goaziou.

* gnu/packages/games.scm (stepmania)[arguments]: Add phase
"ensure-gtk-module-can-be-found".
2019-03-29 07:14:17 +01:00
Ricardo Wurmus d656aea0ef
gnu: zynaddsubfx: Update to 3.0.4.
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.4.
2019-03-29 06:48:13 +01:00
Ricardo Wurmus 59d331f16a
gnu: Add r-abseqr.
* gnu/packages/bioconductor.scm (r-abseqr): New variable.
2019-03-29 06:35:57 +01:00
Ricardo Wurmus f084e41e2c
gnu: Add r-flexdashboard.
* gnu/packages/cran.scm (r-flexdashboard): New variable.
2019-03-29 06:35:48 +01:00
Ricardo Wurmus d2aa2d2451
gnu: r-png: Move to (gnu packages cran).
* gnu/packages/image.scm (r-png): Move from here...
* gnu/packages/cran.scm (r-png): ...to here.
2019-03-29 06:34:39 +01:00
Ricardo Wurmus d8a28332c5
gnu: Add r-ggcorrplot.
* gnu/packages/cran.scm (r-ggcorrplot): New variable.
2019-03-29 05:39:35 +01:00
Nicolas Goaziou 4e43e3175e
gnu: Add openclonk.
* gnu/packages/games.scm (openclonk): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-29 05:34:45 +01:00
Ricardo Wurmus e040413e0a
gnu: r-cairo: Update to 1.5-10.
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-10.
[inputs]: Add zlib.
2019-03-29 05:34:45 +01:00
Tobias Geerinckx-Rice 07de94d6a4
gnu: hyperrogue: Don't use NAME in hyperrogue-data.
* gnu/packages/games.scm (hyperrogue)[native-inputs]: Hard code NAME in
hyperrogue-data source URI.
2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice 4959856443
gnu: quadrapassel: Don't use NAME in source URI.
* gnu/packages/games.scm (quadrapassel)[source]: Hard-code NAME.
2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice 5b35bdaaa5
gnu: libmanette: Don't use NAME in source URI.
* gnu/packages/games.scm (libmanette)[source]: Hard-code NAME.
2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice 98e27db5bb
gnu: frotz-dumb-terminal: Merge strings in URI.
* gnu/packages/games.scm (frotz-dumb-terminal)[source]: Merge separate
string components, probably from a naive ’s/name/"name"/’ substitution.
2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice e2c9f9de9f
gnu: frotz: Don't use NAME in source URI.
* gnu/packages/games.scm (frotz)[source]: Hard-code NAME.
2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice a6ac8e0b31
gnu: fortune-mod: Don't use NAME in source COMMIT.
* gnu/packages/games.scm (fortune-mod)[source]: Hard-code NAME.
2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice 30b8b2013b
gnu: lugaru: Don't use NAME in source URI.
* gnu/packages/games.scm (lugaru)[source]: Hard-code NAME.
2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice 146a4459db
gnu: no-more-secrets: Don't use unstable tarball.
* gnu/packages/games.scm (no-more-secrets)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-29 04:07:43 +01:00
Tobias Geerinckx-Rice a01aea7d66
gnu: hyperrogue: Don't use NAME in source URI.
* gnu/packages/games.scm (hyperrogue)[source]: Hard-code NAME.
2019-03-29 04:07:43 +01:00
Tobias Geerinckx-Rice ed9bcf50d3
gnu: mrrescue: Don't use NAME in source URI.
* gnu/packages/games.scm (mrrescue)[source]: Hard-code NAME.
2019-03-29 04:07:43 +01:00
Tobias Geerinckx-Rice 22da44e8c2
gnu: laby: Don't use NAME in source URI.
* gnu/packages/games.scm (laby)[source]: Hard-code NAME.
2019-03-29 04:07:43 +01:00
Ricardo Wurmus e9d4409bab
gnu: Add python-bbknn.
* gnu/packages/bioinformatics.scm (python-bbknn): New variable.
2019-03-29 03:55:45 +01:00
Ricardo Wurmus c91ecf2db4
gnu: Add python-annoy.
* gnu/packages/python-xyz.scm (python-annoy): New variable.
2019-03-29 03:55:45 +01:00
Ricardo Wurmus 51a9971ccb
gnu: Add python-faiss.
* gnu/packages/graph.scm (python-faiss): New variable.
2019-03-29 03:55:45 +01:00
Ricardo Wurmus 3e40318772
gnu: Add faiss.
* gnu/packages/graph.scm (faiss): New variable.
2019-03-29 03:55:45 +01:00
Tobias Geerinckx-Rice 631b20f90b
gnu: red-eclipse: Use GIT-FETCH for data sources.
* gnu/packages/games.scm (red-eclipse): Update DATA-SOURCE hashes.
[arguments]: COPY-RECURSIVELY instead of extracting tarballs.
[inputs]: Use GIT-FETCH and GIT-FILE-NAME for all DATA-SOURCES.
2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice e464bd607a
gnu: chromium-bsu: Don't use NAME in source URI.
* gnu/packages/games.scm (chromium-bsu)[source]: Hard-code NAME.
2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice d8f4aefed9
gnu: warzone2100: Update source URI.
* gnu/packages/games.scm (warzone2100)[source]: Update URI and don't
hard-code NAME.
2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice c41b2ffbf2
gnu: grue-hunter: Don't use NAME in source URI.
* gnu/packages/games.scm (grue-hunter)[source]: Hard-code NAME.
2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice bb7c071b94
gnu: red-eclipse: Don't use unstable tarball.
* gnu/packages/games.scm (red-eclipse)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-29 04:23:02 +01:00
Danny Milosavljevic 586d30caa2
gnu: rust: Fix test setup.
* gnu/packages/rust.scm (rust-1.30)[arguments]<#:phases>
[disable-amd64-avx-test]: Replace.
(rust)[arguments]<#:phases>[disable-amd64-avx-test]: Replace.
2019-03-29 00:50:35 +01:00
Ivan Petkov 339c1365fd
gnu: rust: Refactor in order to prepare for newer Rust versions.
* gnu/packages/rust.scm (rust-source): Rename to...
(rust-source-pre-1.32): ...this.  Add PATCH-FLAGS.
(rust-bootstrapped-package): Rename to...
(rust-bootstrapped-package-pre-1.32): ...this.
(rust-source): New procedure.
(rust-bootstrapped-package): New procedure.
(mrustc): Use rust-bootstrapped-package-pre-1.32.
(rust-1.19): Use rust-bootstrapped-package-pre-1.32.
(rust-1.20): Use rust-bootstrapped-package-pre-1.32.
(rust-1.21): Use rust-bootstrapped-package-pre-1.32.
(rust-1.22): Use rust-bootstrapped-package-pre-1.32.
(rust-1.23): Use rust-bootstrapped-package-pre-1.32.
(rust-1.24): Use rust-bootstrapped-package-pre-1.32.
(rust-1.25): Use rust-bootstrapped-package-pre-1.32.
(rust-1.26): Use rust-bootstrapped-package-pre-1.32.
(rust-1.27): Use rust-bootstrapped-package-pre-1.32.
(rust-1.28): Use rust-bootstrapped-package-pre-1.32.
(rust-1.29): Use rust-bootstrapped-package-pre-1.32.
(rust-1.30): Use rust-bootstrapped-package-pre-1.32.
(rust): Use rust-bootstrapped-package-pre-1.32.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-29 00:50:35 +01:00
Tobias Geerinckx-Rice 1d6c047937
gnu: powwow: Remove redundant FILE-NAME.
* gnu/packages/games.scm (powwow)[source]: Remove FILE-NAME.
2019-03-29 01:44:09 +01:00
Tobias Geerinckx-Rice 2e5a0690bb
gnu: openrct2: Don't use unstable tarball.
* gnu/packages/games.scm (openrct2)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-29 01:44:09 +01:00
Tobias Geerinckx-Rice 071782762a
gnu: fizmo: Don't use NAME in source URI.
* gnu/packages/games.scm (fizmo)[source]: Hard-code NAME.
2019-03-29 01:44:09 +01:00
Tobias Geerinckx-Rice 00a82e8385
gnu: mars: Use GIT-FILE-NAME.
* gnu/packages/games.scm (mars)[source]: Use GIT-FILE-NAME.
2019-03-29 01:44:09 +01:00
Mark H Weaver fa3c2aad65
gnu: linux-libre: Update to 5.0.5.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.5.
(%linux-libre-hash): Update hash.
2019-03-28 19:36:22 -04:00
Mark H Weaver 4bdf98f62f
gnu: linux-libre@4.19: Update to 4.19.32.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.32.
(%linux-libre-4.19-hash): Update hash.
2019-03-28 19:36:19 -04:00
Mark H Weaver 8ea1d2b5bd
gnu: linux-libre@4.14: Update to 4.14.109.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.109.
(%linux-libre-4.14-hash): Update hash.
2019-03-28 19:36:17 -04:00
Mark H Weaver aa5a425c8f
gnu: linux-libre@4.9: Update to 4.9.166.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.166.
2019-03-28 19:36:14 -04:00
Tobias Geerinckx-Rice feb50ac6dc
gnu: l-abbaye-des-morts: Don't use unstable tarball.
This also fixes a build failure due to the use of NAME.

* gnu/packages/games.scm (l-abbaye-des-morts)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-29 00:55:01 +01:00
Tobias Geerinckx-Rice a8a96bbead
gnu: prboom-plus: Don't use NAME in source URI.
* gnu/packages/games.scm (prboom-plus)[source]: Hard-code NAME.
2019-03-29 00:50:36 +01:00
Tobias Geerinckx-Rice 96848ecc16
gnu: pipewalker: Don't use NAME in source URI.
* gnu/packages/games.scm (pipewalker)[source]: Hard-code NAME.
2019-03-29 00:47:55 +01:00
Tobias Geerinckx-Rice a544817e80
gnu: nethack: Don't use NAME in source URI.
* gnu/packages/games.scm (nethack)[source]: Hard-code NAME, not VERSION.
2019-03-29 00:46:36 +01:00
Tobias Geerinckx-Rice dd0369f426
gnu: ltris: Don't use NAME in source URI.
* gnu/packages/games.scm (ltris)[source]: Hard-code NAME.
2019-03-29 00:43:05 +01:00
Tobias Geerinckx-Rice 9303b09a78
gnu: freedoom: Re-indent.
* gnu/packages/games.scm (freedoom): Re-indent expression.
2019-03-29 00:42:08 +01:00
Tobias Geerinckx-Rice 7c8ed74516
gnu: freedoom: Don't use unstable tarball.
* gnu/packages/games.scm (freedoom)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-29 00:39:58 +01:00
Tobias Geerinckx-Rice 0922354d6a
gnu: cowsay: Don't use NAME in source URI.
* gnu/packages/games.scm (cowsay)[source]: Hard-code NAME.
2019-03-29 00:29:44 +01:00
Tobias Geerinckx-Rice c0c099502b
gnu: armagetron-advanced: Don't use NAME in source URI.
* gnu/packages/games.scm (armagetron-advanced)[source]: Hard-code NAME.
2019-03-29 00:28:49 +01:00
Tobias Geerinckx-Rice 69a0717c66
gnu: project-starfighter: Don't use NAME in source URI.
* gnu/packages/games.scm (project-starfighter)[source]: Hard-code NAME.
2019-03-29 00:26:45 +01:00
Ludovic Courtès c9711f9347
gnu: ratpoison: Provide a .desktop file with an absolute file name.
This allows GDM to start ratpoison.  Without that GDM crashes with an
assertion failure when trying to start a ratpoison session.

* gnu/packages/ratpoison.scm (ratpoison.desktop): Remove.
(ratpoison.desktop)[arguments]: Add #:modules.
Rewrite 'install-xsession' phase such that .desktop file contains an
absolute file name.
2019-03-28 23:06:59 +01:00
Julien Lepiller e8cfce439a
gnu: php: Disable failing tests on armhf.
* gnu/packages/php.scm (php)[arguments]: Disable failing tests on armhf.
2019-03-28 22:59:14 +01:00
Efraim Flashner 241885347a
gnu: reptyr: Enable support for aarch64-linux.
* gnu/packages/screen.scm (reptyr)[supported-systems]: Mark
aarch64-linux as supported.
2019-03-28 21:42:00 +02:00
Brian Leung d2df92e47c
gnu: Add emacs-link-hint.
* gnu/packages/emacs-xyz.scm (emacs-link-hint): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-03-28 21:31:43 +03:00
Tobias Geerinckx-Rice 40d59c4e22
gnu: dropbear: Don't use unstable tarball.
* gnu/packages/screen.scm (dropbear)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-28 20:19:28 +01:00
Tobias Geerinckx-Rice cf9ab49e97
gnu: dropbear: Update to 2019.78.
* gnu/packages/ssh.scm (dropbear): Update to 2019.78.
2019-03-28 20:19:28 +01:00
Tobias Geerinckx-Rice 01307bba9c
gnu: reptyr: Update to 0.7.0.
* gnu/packages/screen.scm (reptyr): Update to 0.7.0.
[source]: Remove patch.
[arguments]: Add bash completion directory name.
* gnu/packages/patches/reptyr-fix-gcc-7.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-03-28 20:19:28 +01:00
Tobias Geerinckx-Rice 6da31b3c7b
gnu: dvdisaster: Use archived source and home page.
* gnu/packages/cdrom.scm (dvdisaster)[source, home-page]:
Use archive.org mirror.
2019-03-28 20:19:28 +01:00
Brian Leung 29e3fd3424
gnu: emacs-dired-hacks: Update to 0.0.1-1.2c12345.
* gnu/packages/emacs-xyz.scm (emacs-dired-hacks): Update to 0.0.1-1.2c12345.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-03-28 21:09:10 +03:00
Efraim Flashner 642b195a70
gnu: gzdoom: Limit supported architectures.
* gnu/packages/games.scm (gzdoom)[supported-systems]: New field.
2019-03-28 19:58:35 +02:00
Ricardo Wurmus 84ad024e2d
gnu: Add r-a4.
* gnu/packages/bioconductor.scm (r-a4): New variable.
2019-03-28 18:23:23 +01:00
Ricardo Wurmus dbfe337586
gnu: Add r-a4base.
* gnu/packages/bioconductor.scm (r-a4base): New variable.
2019-03-28 18:23:23 +01:00
Ricardo Wurmus 8e15f86139
gnu: Add r-a4reporting.
* gnu/packages/bioconductor.scm (r-a4reporting): New variable.
2019-03-28 18:23:23 +01:00
Ricardo Wurmus b8d13e2c0e
gnu: Add r-a4preproc.
* gnu/packages/bioconductor.scm (r-a4preproc): New variable.
2019-03-28 18:23:23 +01:00
Ricardo Wurmus 9ae37581e0
gnu: Add r-a4classif.
* gnu/packages/bioconductor.scm (r-a4classif): New variable.
2019-03-28 18:23:23 +01:00
Ricardo Wurmus 0ec0a5ecc9
gnu: Add r-a4core.
* gnu/packages/bioconductor.scm (r-a4core): New variable.
2019-03-28 18:23:23 +01:00
Ricardo Wurmus a793e88c5e
gnu: Add r-annaffy.
* gnu/packages/bioconductor.scm (r-annaffy): New variable.
2019-03-28 18:23:23 +01:00
Ricardo Wurmus ce77562a9e
gnu: Add r-mlinterfaces.
* gnu/packages/bioconductor.scm (r-mlinterfaces): New variable.
2019-03-28 18:23:23 +01:00
Ricardo Wurmus 409a13fe76
gnu: Add r-mpm.
* gnu/packages/cran.scm (r-mpm): New variable.
2019-03-28 18:23:23 +01:00
Ricardo Wurmus 74cada8ef1
gnu: Add r-mlbench.
* gnu/packages/cran.scm (r-mlbench): New variable.
2019-03-28 18:23:22 +01:00
Ricardo Wurmus efba56139a
gnu: Add r-threejs.
* gnu/packages/cran.scm (r-threejs): New variable.
2019-03-28 18:23:22 +01:00
Ricardo Wurmus d59df3340b
gnu: Add r-gbm.
* gnu/packages/cran.scm (r-gbm): New variable.
2019-03-28 18:23:22 +01:00
Ricardo Wurmus 8473597f80
gnu: Add r-ggvis.
* gnu/packages/cran.scm (r-ggvis): New variable.
2019-03-28 18:23:22 +01:00
Ricardo Wurmus fe3fb4e7ef
gnu: Add r-rda.
* gnu/packages/cran.scm (r-rda): New variable.
2019-03-28 18:23:22 +01:00
Ricardo Wurmus aae0b86d35
gnu: Add r-pamr.
* gnu/packages/cran.scm (r-pamr): New variable.
2019-03-28 18:23:22 +01:00
Ricardo Wurmus 1c0c4b544d
gnu: Add r-varselrf.
* gnu/packages/cran.scm (r-varselrf): New variable.
2019-03-28 18:23:22 +01:00
Efraim Flashner 1aa662b309
gnu: ogre: Don't use unstable tarball.
* gnu/packages/graphics.scm (ogre)[source]: Download using git-fetch.
2019-03-28 12:14:22 +02:00
Efraim Flashner d5640c587f
gnu: googletest: Don't use unstable tarball.
* gnu/packages/check.scm (googletest)[source]: Download using git-fetch.
* gnu/packages/crypto.scm (encfs)[arguments]: Adjust accordingly.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Same.
* gnu/packages/terminals.scm (eternalterminal)[arguments]: Same.
* gnu/packages/graphics.scm (ogre)[arguments]: Same. Remove now
unnecessary custom 'pre-build phase.
2019-03-28 12:14:15 +02:00
Ricardo Wurmus d98fb5603b
gnu: hpcguix-web: Fix indentation.
* gnu/packages/web.scm (hpcguix-web): Fix indentation.
2019-03-27 23:11:20 +01:00
Efraim Flashner d8de2c01ff
gnu: emacs-emmet-mode: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-emmet-mode)[source]: Download using
git-fetch.
2019-03-27 23:05:08 +02:00
Efraim Flashner 0f8ff55513
gnu: emacs-tablist: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-tablist)[source]: Download using
git-fetch.
2019-03-27 23:05:07 +02:00
Efraim Flashner b762dde997
gnu: emacs-mmm-mode: Update to 0.5.7.
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode): Update to 0.5.7.
2019-03-27 23:05:07 +02:00
Efraim Flashner d3f6617b26
gnu: emacs-mmm-mode: Remove unnecessary phase.
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode)[arguments]: Remove
unnecessary 'autogen phase.
2019-03-27 23:05:07 +02:00
Efraim Flashner 8cd07b72e9
gnu: emacs-mmm-mode: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode)[source]: Don't use
unstable tarball.
2019-03-27 23:05:07 +02:00
Efraim Flashner 49464d2b16
gnu: emacs-google-maps: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-google-maps)[source]: Download using
git-fetch.
2019-03-27 23:05:06 +02:00
Efraim Flashner 2c19ff18e2
gnu: emacs-direnv: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-direnv)[source]: Download using
git-fetch.
2019-03-27 23:05:06 +02:00
Efraim Flashner 39a46a1f10
gnu: emacs-calfw: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-calfw)[source]: Download using
git-fetch.
2019-03-27 23:05:06 +02:00
Efraim Flashner b4f96f3b3b
gnu: emacs-autothemer: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-autothemer)[source]: Download using
git-fetch.
2019-03-27 23:05:05 +02:00
Efraim Flashner 3cf9a85ba7
gnu: emacs-ag: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-ag)[source]: Download using
git-fetch.
2019-03-27 23:05:02 +02:00
Efraim Flashner c6abe90478
gnu: font-open-dyslexic: Don't use unstable tarball.
* gnu/packages/fonts.scm (font-open-dyslexic)[source]: Download using
git-fetch.
2019-03-27 22:25:17 +02:00
Efraim Flashner 1e90e4b0d9
gnu: font-google-material-design-icons: Don't use unstable tarball.
* gnu/packages/fonts.scm (font-google-material-design-icons)[source]:
Download using git-fetch.
2019-03-27 22:25:17 +02:00
Efraim Flashner 1f07550c86
gnu: font-tamzen: Don't use unstable tarball.
* gnu/packages/fonts.scm (font-tamzen)[source]: Download using
git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
2019-03-27 22:25:16 +02:00
Efraim Flashner c2426dbddc
gnu: font-fira-sans: Don't use unstable tarball.
* gnu/packages/fonts.scm (font-fira-sans)[source]: Download using
git-fetch.
2019-03-27 22:25:16 +02:00
Efraim Flashner 8f4dccf75d
gnu: font-adobe-source-han-sans: Don't use unstable tarball.
* gnu/packages/fonts.scm (font-adobe-source-han-sans)[source]: Download
using git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
2019-03-27 22:25:13 +02:00
Ricardo Wurmus 3d17dc5d8f
gnu: r-geometry: Update to 0.4.1.
* gnu/packages/cran.scm (r-geometry): Update to 0.4.1.
[propagated-inputs]: Fix typo.
2019-03-27 21:00:28 +01:00
Ricardo Wurmus 1d7022f706
gnu: r-feather: Update to 0.3.3.
* gnu/packages/cran.scm (r-feather): Update to 0.3.3.
2019-03-27 21:00:28 +01:00
Nicolas Goaziou 24540c310f
gnu: Add emacs-relint.
* gnu/packages/emacs-xyz.scm (emacs-relint): New variable.
2019-03-27 20:41:29 +01:00
Brian Leung c881ed8698
gnu: Add emacs-zones.
* gnu/packages/emacs-xyz.scm (emacs-zones): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-03-27 22:18:32 +03:00
Ricardo Wurmus f8295ee6de
gnu: Add r-clusterprofiler.
* gnu/packages/bioconductor.scm (r-clusterprofiler): New variable.
2019-03-27 16:17:20 +01:00
Ricardo Wurmus 9c30cf65d2
gnu: Add r-enrichplot.
* gnu/packages/bioconductor.scm (r-enrichplot): New variable.
2019-03-27 16:17:20 +01:00
Ricardo Wurmus 305050b56d
gnu: Add r-dose.
* gnu/packages/bioconductor.scm (r-dose): New variable.
2019-03-27 16:17:20 +01:00
Ricardo Wurmus 11f226e124
gnu: Add r-ggraph.
* gnu/packages/cran.scm (r-ggraph): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus b5b0a2ff49
gnu: Add r-europepmc.
* gnu/packages/cran.scm (r-europepmc): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus 83f43284c3
gnu: Add r-ggforce.
* gnu/packages/cran.scm (r-ggforce): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus d4ff09af0d
gnu: Add r-urltools.
* gnu/packages/cran.scm (r-urltools): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus 09dde7fb01
gnu: Add r-polyclip.
* gnu/packages/cran.scm (r-polyclip): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus 91e06bedf8
gnu: Add r-tweenr.
* gnu/packages/cran.scm (r-tweenr): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus 85431ca3a8
gnu: Add r-triebeard.
* gnu/packages/cran.scm (r-triebeard): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus e25828839d
gnu: Add r-ggplotify.
* gnu/packages/cran.scm (r-ggplotify): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus 1c59ec707e
gnu: Add r-farver.
* gnu/packages/cran.scm (r-farver): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus 585d5ae0fb
gnu: Add r-gridgraphics.
* gnu/packages/cran.scm (r-gridgraphics): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus f8a5af4653
gnu: Add r-do-db.
* gnu/packages/bioconductor.scm (r-do-db): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus af26c7ae70
gnu: Add r-fgsea.
* gnu/packages/bioconductor.scm (r-fgsea): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus 0d50d0df08
gnu: Add r-msigdbr.
* gnu/packages/cran.scm (r-msigdbr): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus 2d70460892
gnu: Add r-xkcd.
* gnu/packages/cran.scm (r-xkcd): New variable.
2019-03-27 16:17:19 +01:00
Ricardo Wurmus 2331bf2a64
gnu: Add r-extrafont.
* gnu/packages/cran.scm (r-extrafont): New variable.
2019-03-27 16:17:18 +01:00
Ricardo Wurmus b6933ea634
gnu: Add r-extrafontdb.
* gnu/packages/cran.scm (r-extrafontdb): New variable.
2019-03-27 16:17:18 +01:00
Ricardo Wurmus 81df4e1e98
gnu: Add r-rttf2pt1.
* gnu/packages/cran.scm (r-rttf2pt1): New variable.
2019-03-27 16:17:18 +01:00
Ludovic Courtès 06013a45aa
gnu: emacs-debbugs: Update to 0.17.
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.17.
2019-03-27 14:59:42 +01:00
Ricardo Wurmus 18c51cf3d3
gnu: Add r-xyz.
* gnu/packages/cran.scm (r-xyz): New variable.
2019-03-27 14:43:26 +01:00
Pierre Neidhardt 37099f5844
gnu: Add emacs-webfeeder.
* gnu/packages/emacs-xyz.scm (emacs-webfeeder): New variable.
2019-03-27 11:33:09 +01:00
Ricardo Wurmus 58d8225ddb
gnu: trim-galore: Add pigz.
* gnu/packages/bioinformatics.scm (trim-galore)[inputs]: Add pigz.
[arguments]: Embed reference to pigz.
2019-03-27 11:32:08 +01:00
Ricardo Wurmus 5f1e31094d
gnu: trim-galore: Fix test for Python.
* gnu/packages/bioinformatics.scm (trim-galore)[arguments]: Replace
"configure" phase to skip ill-advised test for Python.
2019-03-27 11:28:38 +01:00
Ricardo Wurmus 2a509880d4
gnu: hdf-java: Adjust indentation.
* gnu/packages/maths.scm (hdf-java): Adjust indentation.
2019-03-27 10:47:34 +01:00
Ricardo Wurmus 64dc8b0bfd
gnu: hdf-java: Fix build.
* gnu/packages/maths.scm (hdf-java)[arguments]: Fix copying from automake;
substitute embedded hdf5 version number.
2019-03-27 10:13:46 +01:00
Ricardo Wurmus 9286c0f7e8
gnu: hdf-java: Use INVOKE.
* gnu/packages/maths.scm (hdf-java)[arguments]: Unconditionally return #T from
build phases.
2019-03-27 10:12:57 +01:00
Ricardo Wurmus dfe420ee46
gnu: r-rhdf5lib: Update to 1.4.3.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.3.
2019-03-27 09:33:50 +01:00
Ricardo Wurmus 3b6c77445b
gnu: r-genomicfeatures: Update to 1.34.7.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.7.
2019-03-27 09:33:50 +01:00
Ricardo Wurmus a12c527d3c
gnu: r-hdf5r: Update to 1.1.1.
* gnu/packages/cran.scm (r-hdf5r): Update to 1.1.1.
2019-03-27 09:33:50 +01:00
Ricardo Wurmus a7332d1a2f
gnu: r-caret: Update to 6.0-82.
* gnu/packages/statistics.scm (r-caret): Update to 6.0-82.
2019-03-27 09:33:50 +01:00
Ricardo Wurmus 733b3c59da
gnu: r-gtable: Update to 0.3.0.
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.0.
2019-03-27 09:33:50 +01:00
Ricardo Wurmus fc64504f2d
gnu: grantlee: Delete broken tests.
* gnu/packages/qt.scm (grantlee)[arguments]: Add phase "delete-broken-tests".
2019-03-27 09:33:50 +01:00
Kei Kebreau 4fee5ec049
gnu: Add adanaxis-mush and adanaxisgpl.
* gnu/packages/games.scm (adanaxis-mush, adanaxisgpl): New variables.
2019-03-26 20:59:15 -04:00
Pierre Langlois 4dcf221c85
gnu: qjackctl: Re-enable xunique.
Version 0.5.6 of qjackctl appears to have fixed the xunique
bug that was causing X hanging when using tiling window managers.

See d54a1da43f/ChangeLog (L9)

* gnu/packages/audio.scm (qjackctl)[arguments]: Remove "--disable-xunique"
from configure-flags.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-27 00:09:38 +01:00
Ricardo Wurmus dd2f0cdba1
gnu: python-django-overextends: Use INVOKE.
* gnu/packages/django.scm (python-django-overextends)[arguments]: Use INVOKE.
2019-03-27 00:04:07 +01:00
Ricardo Wurmus de6be02379
gnu: python-django-contact-form: Use INVOKE.
* gnu/packages/django.scm (python-django-contact-form)[arguments]: Use INVOKE.
2019-03-27 00:03:31 +01:00
Ricardo Wurmus 7cdc7e579b
gnu: fritzing: Update to 0.9.3b.
* gnu/packages/engineering.scm (fritzing): Update to 0.9.3b.
[source]: Fetch from git.
[arguments]: Use INVOKE and adjust configure phase.
[inputs]: Add libgit2; fetch fritzing-parts-db via git.
2019-03-26 23:58:33 +01:00
Ricardo Wurmus 68631e037b
gnu: ldc: Use INVOKE.
* gnu/packages/dlang.scm (ldc)[arguments]: Use INVOKE.
2019-03-26 23:13:54 +01:00
Ricardo Wurmus 4b81d5c4bc
gnu: ldc-bootstrap: Use INVOKE.
* gnu/packages/dlang.scm (ldc-bootstrap)[arguments]: Use INVOKE and
unconditionally return #T from build phase.
2019-03-26 23:13:54 +01:00
Ricardo Wurmus 27cd31e6a5
gnu: open-adventure: Use INVOKE.
* gnu/packages/games.scm (open-adventure)[arguments]: Use INVOKE.
2019-03-26 23:13:54 +01:00
Ricardo Wurmus 7b67bb1fab
gnu: 0ad: Use INVOKE.
* gnu/packages/games.scm (0ad)[arguments]: Use INVOKE.
2019-03-26 23:13:51 +01:00
Pierre Neidhardt c771b799bd
gnu: Add jami-client-gnome.
* gnu/packages/telephony.scm (jami-client-gnome): New variable.
2019-03-26 19:17:01 +01:00
Pierre Neidhardt b630967247
gnu: Add libringclient.
* gnu/packages/telephony.scm (libringclient): New variable.
2019-03-26 19:17:01 +01:00
Pierre Neidhardt 1bfcb19bc3
gnu: Add libring.
* gnu/packages/telephony.scm (libring): New variable.
2019-03-26 19:17:01 +01:00
Pierre Neidhardt 915829e662
gnu: Add pjproject-jami.
* gnu/packages/telephony.scm (pjproject-jami): New variable.
2019-03-26 19:17:01 +01:00
Pierre Neidhardt bd4b6f4164
gnu: Add pjproject.
* gnu/packages/telephony.scm (pjproject): New variable.
2019-03-26 19:17:01 +01:00
Ludovic Courtès 863519f660
gnu: current-guix: Delay effectful bits.
* gnu/packages/package-management.scm (current-guix): Delay 'repository-root'.
2019-03-26 18:11:52 +01:00
Ricardo Wurmus 28d32817d8
gnu: python-scanpy: Update to 1.4.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.
[source]: Fetch from git.
[arguments]: Disable broken tests.
[native-inputs]: Add python-pytest.
[home-page]: Use HTTPS.
2019-03-26 18:06:35 +01:00
Ricardo Wurmus 8c9372c124
gnu: python-anndata: Update to 0.6.18.
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.6.18.
2019-03-26 17:13:13 +01:00
Ricardo Wurmus fdc316f374
gnu: trim-galore: Update to 0.6.1.
* gnu/packages/bioinformatics.scm (trim-galore): Update to 0.6.1.
[arguments]: Adjust patching.
2019-03-26 16:40:42 +01:00
Ricardo Wurmus 9ac17c6242
gnu: cutadapt: Update to 2.1.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 2.1.
[source]: Fetch from pypi.
[native-inputs]: Add python-setuptools-scm.
2019-03-26 16:40:42 +01:00
Ricardo Wurmus 24d6498972
gnu: python-xopen: Update to 0.5.0.
* gnu/packages/python-xyz.scm (python-xopen): Update to 0.5.0.
2019-03-26 16:40:42 +01:00
Pierre Neidhardt f95e33a7ad
gnu: edgar: Rename package to the-legend-of-edgar.
* gnu/packages/games.scm (edgar): Define in terms of
'deprecated-package'.
(the-legend-of-edgar): New variable, formerly known as "edgar".
2019-03-26 13:44:01 +01:00
Pierre Neidhardt b1aee9fce2
gnu: btanks: Rename package to battle-tanks.
* gnu/packages/games.scm (btanks): Define in terms of
'deprecated-package'.
(battle-tanks): New variable, formerly known as "btanks".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt f6a21d61de
gnu: tome4: Rename package to tales-of-maj-eyal.
* gnu/packages/games.scm (tome4): Define in terms of
'deprecated-package'.
(tales-of-maj-eyal): New variable, formerly known as "tome4".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 24a67aef2a
gnu: crawl-tiles: Rename package to dungeon-crawl-stone-soup-tiles.
* gnu/packages/games.scm (crawl-tiles): Define in terms of
'deprecated-package'.
(dungeon-crawl-stone-soup-tiles): New variable, formerly known as "crawl-tiles".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 36a0b5b48c
gnu: crawl: Rename package to dungeon-crawl-stone-soup.
* gnu/packages/games.scm (crawl): Define in terms of
'deprecated-package'.
(dungeon-crawl-stone-soup): New variable, formerly known as "crawl".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 8b6e2bc15f
gnu: fillets-ng: Rename package to fish-fillets-ng.
* gnu/packages/games.scm (fillets-ng): Define in terms of
'deprecated-package'.
(fish-fillets-ng): New variable, formerly known as "fillets-ng".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 6639295f2f
gnu: kiki: Rename package to kiki-the-nano-bot.
* gnu/packages/games.scm (kiki): Define in terms of
'deprecated-package'.
(kiki-the-nano-bot): New variable, formerly known as "kiki".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 184f5c8db1
gnu: starfighter: Rename package to project-starfighter.
* gnu/packages/games.scm (starfighter): Define in terms of
'deprecated-package'.
(project-starfighter): New variable, formerly known as "starfighter".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt ecdb1348ad
gnu: wesnoth-server: Rename package to the-battle-for-wesnoth-server.
* gnu/packages/games.scm (wesnoth-server): Define in terms of
'deprecated-package'.
(the-battle-for-wesnoth-server): New variable, formerly known as "wesnoth-server".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 375cb94130
gnu: wesnoth: Rename package to the-battle-for-wesnoth.
* gnu/packages/games.scm (wesnoth): Define in terms of
'deprecated-package'.
(the-battle-for-wesnoth): New variable, formerly known as "wesnoth".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt c91ed484d0
gnu: abbaye: Rename package to l-abbaye-des-morts.
* gnu/packages/games.scm (abbaye): Define in terms of
'deprecated-package'.
(l-abbaye-des-morts): New variable, formerly known as "abbaye".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt c97e4d8bbe
gnu: gnubg: Rename package to gnubackgammon.
* gnu/packages/games.scm (gnubg): Define in terms of
'deprecated-package'.
(gnubackgammon): New variable, formerly known as "gnubg".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt 973bd8a62c
gnu: cataclysm-dda: Rename package to cataclysm-dark-days-ahead.
* gnu/packages/games.scm (cataclysm-dda): Define in terms of
'deprecated-package'.
(cataclysm-dark-days-ahead): New variable, formerly known as "cataclysm-dda".
2019-03-26 13:44:00 +01:00
Pierre Neidhardt df42e0f9c9
gnu: armagetronad: Rename package to armagetron-advanced.
* gnu/packages/games.scm (armagetronad): Define in terms of
'deprecated-package'.
(armagetron-advanced): New variable, formerly known as "armagetronad".
2019-03-26 13:44:00 +01:00
Danny Milosavljevic ceab612374
gnu: docker: Use disjunct temp directories for probing.
* gnu/packages/patches/docker-use-fewer-modprobes.patch: Use disjunct temp
directories for probing.
2019-03-26 12:23:36 +01:00
Danny Milosavljevic 5e00dcc89e
gnu: docker: Add comment.
* gnu/packages/patches/docker-use-fewer-modprobes.patch: Add comment.
2019-03-26 12:23:36 +01:00
Ludovic Courtès e6301fb76d
packages: Adjust to new calling convention for "thunked" fields.
Fixes <https://bugs.gnu.org/34995>.

This is a followup to abd4d6b33d.

* guix/packages.scm (package->bag): Adjust calls to INPUTS,
PROPAGATED-INPUTS, NATIVE-INPUTS, and ARGS, passing them SELF as an
argument.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Use (package-inputs
this-record) intead of (inputs).
* gnu/packages/version-control.scm (git)[arguments]: Likewise.
2019-03-26 10:26:02 +01:00
nee 6c177f6140
gnu: gzdoom: Update to 3.7.2.
* gnu/packages/games.scm (gzdoom): Update to 3.7.2.
[source](uri): Update path.
[source](snippet): Bundled libjpeg directory has been renamed.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2019-03-25 21:26:43 -04:00
Ludovic Courtès cde08a5120
gnu: guix: Update to f970946.
* gnu/packages/package-management.scm (guix): Update to f970946.
2019-03-25 23:37:05 +01:00
Danny Milosavljevic 516f6f55eb
gnu: docker: Use fewer modprobes.
Fixes <https://bugs.gnu.org/34333>.
Reported by Allan Adair <allan@adair.io>.

* gnu/packages/patches/docker-use-fewer-modprobes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/docker.scm (docker)[source]: Use it.
2019-03-25 20:27:57 +01:00
Leo Famulari cdfb69b46a
gnu: nano: Update to 4.0.
* gnu/packages/nano.scm (nano): Update to 4.0.
2019-03-25 15:02:59 -04:00
Ricardo Wurmus b9b177b317
gnu: Add r-svmisc.
* gnu/packages/cran.scm (r-svmisc): New variable.
2019-03-25 17:20:14 +01:00
Ricardo Wurmus 3f6e6e9857
gnu: Add r-rjava.
* gnu/packages/cran.scm (r-rjava): New variable.
2019-03-25 17:19:47 +01:00
Ricardo Wurmus 4f8b1fb35f
gnu: Add r-r2html.
* gnu/packages/cran.scm (r-r2html): New variable.
2019-03-25 16:29:03 +01:00
Ricardo Wurmus 7166b77adc
gnu: Add r-sampling.
* gnu/packages/cran.scm (r-sampling): New variable.
2019-03-25 16:28:38 +01:00
Ricardo Wurmus 6bdce94f43
gnu: r-gsl: Update to 2.1-6.
* gnu/packages/cran.scm (r-gsl): Update to 2.1-6.
2019-03-25 16:28:20 +01:00
Ricardo Wurmus a6d867fed9
gnu: Add r-sigpathway.
* gnu/packages/bioconductor.scm (r-sigpathway): New variable.
2019-03-25 16:20:04 +01:00
Ricardo Wurmus 9d0f794229
gnu: Add r-anota.
* gnu/packages/bioconductor.scm (r-anota): New variable.
2019-03-25 16:20:00 +01:00
Ricardo Wurmus c04f230eb3
gnu: Add r-gosemsim.
* gnu/packages/bioconductor.scm (r-gosemsim): New variable.
2019-03-25 16:19:52 +01:00
Ricardo Wurmus 3e41919d51
gnu: Add r-heatplus.
* gnu/packages/bioconductor.scm (r-heatplus): New variable.
2019-03-25 16:19:40 +01:00
Ricardo Wurmus c538bcdd38
gnu: Add r-varianttools.
* gnu/packages/bioconductor.scm (r-varianttools): New variable.
2019-03-25 16:09:16 +01:00
Ricardo Wurmus 8a5460b4fb
gnu: Add r-triform.
* gnu/packages/bioconductor.scm (r-triform): New variable.
2019-03-25 16:09:07 +01:00
Ricardo Wurmus 3080b81af6
gnu: Add r-hapassoc.
* gnu/packages/cran.scm (r-hapassoc): New variable.
2019-03-25 16:02:15 +01:00
Ricardo Wurmus a0583c0d13
gnu: Add r-hierfstat.
* gnu/packages/cran.scm (r-hierfstat): New variable.
2019-03-25 15:58:38 +01:00
Vagrant Cascadian ab7f1eb97a
gnu: Add brightnessctl.
* gnu/packages/linux.scm (brightnessctl): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-25 15:21:15 +01:00
Ricardo Wurmus 80eb01c776
gnu: r-gkmsvm: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gkmsvm): Move from here...
* gnu/packages/bioconductor.scm (r-gkmsvm): ...to here.
2019-03-25 14:34:41 +01:00
Ricardo Wurmus bac0ca322c
gnu: r-kernlab: Move to (gnu packages cran).
* gnu/packages/machine-learning.scm (r-kernlab): Move from here...
* gnu/packages/cran.scm (r-kernlab): ...to here.
2019-03-25 14:33:02 +01:00
Ricardo Wurmus c5a2b518ad
gnu: r-wgcna: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-wgcna): Move from here...
* gnu/packages/cran.scm (r-wgcna): ...to here.
2019-03-25 14:05:09 +01:00
Ricardo Wurmus 72a216a9d0
gnu: r-optparse: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-optparse): Move from here...
* gnu/packages/cran.scm (r-optparse): ...to here.
2019-03-25 14:04:19 +01:00
Ricardo Wurmus 0ef062b338
gnu: r-bookdown: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-bookdown): Move from here...
* gnu/packages/cran.scm (r-bookdown): ...to here.
2019-03-25 14:03:21 +01:00
Ricardo Wurmus 469fb43891
gnu: r-sparql: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-sparql): Move from here...
* gnu/packages/cran.scm (r-sparql): ...to here.
2019-03-25 14:01:56 +01:00
Ricardo Wurmus 7cd4ff2f0c
gnu: Add r-tdthap.
* gnu/packages/cran.scm (r-tdthap): New variable.
2019-03-25 14:00:32 +01:00
Ricardo Wurmus b8fea3c859
gnu: Add r-hwde.
* gnu/packages/cran.scm (r-hwde): New variable.
2019-03-25 14:00:32 +01:00
Ricardo Wurmus 1cdd9f0e8a
gnu: Add r-ldheatmap.
* gnu/packages/cran.scm (r-ldheatmap): New variable.
2019-03-25 14:00:32 +01:00
Ricardo Wurmus d4a255a484
gnu: Add r-dlmap.
* gnu/packages/cran.scm (r-dlmap): New variable.
2019-03-25 14:00:32 +01:00
Ricardo Wurmus 73fcd22244
gnu: Add r-ibdreg.
* gnu/packages/cran.scm (r-ibdreg): New variable.
2019-03-25 14:00:31 +01:00
Ricardo Wurmus bffb58269f
gnu: Add r-bqtl.
* gnu/packages/cran.scm (r-bqtl): New variable.
2019-03-25 14:00:31 +01:00
Tobias Geerinckx-Rice c3b5c803f0
gnu: perl-svg: Update source URL.
* gnu/packages/perl.scm (perl-svg)[source]: Update URL.
2019-03-25 14:11:03 +01:00
Tobias Geerinckx-Rice 034eae9c12
gnu: perl-class-date: Update source URL.
* gnu/packages/perl.scm (perl-class-date)[source]: Update URL.
2019-03-25 14:11:03 +01:00
Tobias Geerinckx-Rice 587f764e2a
gnu: perl-mouse: Update source URL.
* gnu/packages/perl.scm (perl-mouse)[source]: Update URL.
2019-03-25 14:11:02 +01:00
Tobias Geerinckx-Rice 2db3b2d303
gnu: perl-carp: Update source URL.
* gnu/packages/perl.scm (perl-carp)[source]: Update URL.
2019-03-25 14:11:02 +01:00
Tobias Geerinckx-Rice a4876fbe17
gnu: perl-class-accessor-grouped: Update source URL.
* gnu/packages/perl.scm (perl-class-accessor-grouped)[source]:
Update URL.
2019-03-25 14:10:45 +01:00
Tobias Geerinckx-Rice a7da90936f
gnu: perl-base: Update source URL.
* gnu/packages/perl.scm (perl-base)[source]: Update URL.
2019-03-25 13:34:59 +01:00
Tobias Geerinckx-Rice 83617aec58
gnu: perl-datetime-calendar-julian: Update source URL.
* gnu/packages/perl.scm (perl-datetime-calendar-julian)[source]: Update URL.
2019-03-25 13:31:29 +01:00
Tobias Geerinckx-Rice ae61388fb5
gnu: perl-carp-clan: Update source URL.
* gnu/packages/perl.scm (perl-carp-clan)[source]: Update URL.
2019-03-25 13:27:48 +01:00
Tobias Geerinckx-Rice e68f20502c
gnu: perl-class-c3-componentised: Update source URL.
* gnu/packages/perl.scm (perl-class-c3-componentised)[source]:
Update URL.
2019-03-25 13:18:35 +01:00
Tobias Geerinckx-Rice 5ca9cb1e17
gnu: perl-plack-test-externalserver: Update source URL.
* gnu/packages/web.scm (perl-plack-test-externalserver)[source]:
Update URL.
2019-03-25 13:11:25 +01:00
Tobias Geerinckx-Rice fd9fe868f8
gnu: perl-moosex-emulate-class-accessor-fast: Update source URL.
* gnu/packages/perl.scm (perl-moosex-emulate-class-accessor-fast)
[source]: Update URL.
2019-03-25 12:59:39 +01:00
Tobias Geerinckx-Rice 357b69499a
gnu: perl-log-any: Update source URL.
* gnu/packages/perl.scm (perl-log-any)[source]: Update URL.
2019-03-25 12:59:39 +01:00
Tobias Geerinckx-Rice 3ed36f3153
gnu: perl-file-temp: Update source URL.
* gnu/packages/perl.scm (perl-file-temp)[source]: Update URL.
2019-03-25 12:59:39 +01:00
Tobias Geerinckx-Rice 799f484251
gnu: perl-object-signature: Update source URL.
* gnu/packages/perl.scm (perl-object-signature)[source]: Update URL.
2019-03-25 12:59:39 +01:00
Meiyo Peng f970946c1d
gnu: fmt: Update to 5.3.0.
* gnu/packages/pretty-print.scm (fmt): Update to 5.3.0.
  [arguments]: Remove #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:27 +01:00
Brian Leung 8dc329656b
gnu: Add emacs-company-jedi.
* gnu/packages/emacs-xyz.scm (emacs-company-jedi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 1172d914ea
gnu: Add emacs-company-flow.
* gnu/packages/emacs-xyz.scm (emacs-company-flow): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 06aff73855
gnu: Add emacs-jedi.
* gnu/packages/emacs-xyz.scm (emacs-jedi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 16f6a75db0
gnu: Add emacs-python-environment.
* gnu/packages/emacs-xyz.scm (emacs-python-environment): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 13e99cfcd8
gnu: Add emacs-prescient.
* gnu/packages/emacs-xyz.scm (emacs-prescient): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 5247cd2a5e
gnu: Add emacs-company-auctex.
* gnu/packages/emacs-xyz.scm (emacs-company-auctex): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung 6cd504ce75
gnu: Add emacs-company-cabal.
* gnu/packages/emacs-xyz.scm (emacs-company-cabal): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Brian Leung bb034ab080
gnu: Add emacs-company-lsp.
* gnu/packages/emacs-xyz.scm (emacs-company-lsp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Pierre Langlois de5ea7d961
gnu: Add gPodder.
* gnu/packages/podcast.scm (gpodder): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
Pierre Langlois b58ab1598f
gnu: Add python-mygpoclient.
* gnu/packages/gpodder.scm (python-mygpoclient): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:25 +01:00
Mark H Weaver 4518a9dfa8
gnu: icecat: Update to 60.6.1-guix1 [security fixes].
Includes fixes for CVE-2019-9810 and CVE-2019-9813.

* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.1-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
2019-03-25 05:23:39 -04:00
Ricardo Wurmus cd47dcf6a2
gnu: Add r-haplo-stats.
* gnu/packages/cran.scm (r-haplo-stats): New variable.
2019-03-25 10:02:03 +01:00
Ricardo Wurmus a8c965cfec
gnu: Add r-rms.
* gnu/packages/cran.scm (r-rms): New variable.
2019-03-25 10:02:03 +01:00
Ricardo Wurmus 6a472af3f6
gnu: Add r-polspline.
* gnu/packages/cran.scm (r-polspline): New variable.
2019-03-25 10:02:03 +01:00
Ricardo Wurmus 5ef7d057ed
gnu: Add r-snp-plotter.
* gnu/packages/cran.scm (r-snp-plotter): New variable.
2019-03-25 10:02:02 +01:00
Ricardo Wurmus 601ddf02cc
gnu: Add r-genetics.
* gnu/packages/cran.scm (r-genetics): New variable.
2019-03-25 10:02:02 +01:00
Mark H Weaver 33b233ba63
gnu: linux-libre: Update to 5.0.4.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.4.
(%linux-libre-hash): Update hash.
2019-03-25 01:23:04 -04:00
Mark H Weaver be6d2713d3
gnu: linux-libre@4.19: Update to 4.19.31.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.31.
(%linux-libre-4.19-hash): Update hash.
2019-03-25 01:22:06 -04:00
Mark H Weaver 60b223ac51
gnu: linux-libre@4.14: Update to 4.14.108.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.108.
(%linux-libre-4.14-hash): Update hash.
2019-03-25 01:21:12 -04:00
Mark H Weaver eb69d5ddde
gnu: linux-libre@4.9: Update to 4.9.165.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.165.
2019-03-25 01:20:35 -04:00
Mark H Weaver e02b7694ec
gnu: linux-libre@4.4: Update to 4.4.177.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.177.
2019-03-25 01:19:39 -04:00
Oleg Pykhalov b9a57fd1b2
gnu: perl-uri-escape: Update source tarball URL.
* gnu/packages/perl-web.scm (perl-uri-escape)[source]: Update URL.
2019-03-25 01:59:50 +03:00
Ricardo Wurmus 8559df6406
gnu: perl6-meta6: Remove unsupported syntax from description.
* gnu/packages/perl6.scm (perl6-meta6)[description]: Remove @quot.
2019-03-24 23:55:03 +01:00
Ricardo Wurmus b15d19a651
gnu: perl6-json-class: Remove unsupported syntax from description.
* gnu/packages/perl6.scm (perl6-json-class)[description]: Remove @quot.
2019-03-24 23:54:51 +01:00
Ricardo Wurmus cd977b35be
gnu: Add r-rmetasim.
* gnu/packages/cran.scm (r-rmetasim): New variable.
2019-03-24 23:44:13 +01:00
Ricardo Wurmus 3d2bc81751
gnu: Add r-pegas.
* gnu/packages/cran.scm (r-pegas): New variable.
2019-03-24 23:44:13 +01:00
Ricardo Wurmus 91c1fbdfdd
gnu: Add r-adegenet.
* gnu/packages/cran.scm (r-adegenet): New variable.
2019-03-24 23:44:13 +01:00
Ricardo Wurmus c4d521ba2c
gnu: r-seqinr: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-seqinr): Move from here...
* gnu/packages/cran.scm (r-seqinr): ...to here.
2019-03-24 23:44:13 +01:00
Ricardo Wurmus 49a48c496f
gnu: r-acsnminer: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-acsnminer): Move from here...
* gnu/packages/cran.scm (r-acsnminer): ...to here.
2019-03-24 23:44:13 +01:00
Ricardo Wurmus e371e534a7
gnu: Add r-spdep.
* gnu/packages/cran.scm (r-spdep): New variable.
2019-03-24 23:44:13 +01:00
Ricardo Wurmus d884e4072b
gnu: Add r-sf.
* gnu/packages/cran.scm (r-sf): New variable.
2019-03-24 23:44:12 +01:00
Ricardo Wurmus dcc502865c
gnu: Add r-deldir.
* gnu/packages/cran.scm (r-deldir): New variable.
2019-03-24 23:44:12 +01:00
Ricardo Wurmus e5228273de
gnu: Add r-learnbayes.
* gnu/packages/cran.scm (r-learnbayes): New variable.
2019-03-24 23:44:12 +01:00
Ricardo Wurmus 66c08ff4c3
gnu: Add r-spdata.
* gnu/packages/cran.scm (r-spdata): New variable.
2019-03-24 23:44:12 +01:00
Ricardo Wurmus 518c1dea10
gnu: Add r-classint.
* gnu/packages/cran.scm (r-classint): New variable.
2019-03-24 23:44:12 +01:00
Ricardo Wurmus 7002c44fb0
gnu: Add r-units.
* gnu/packages/cran.scm (r-units): New variable.
2019-03-24 23:44:12 +01:00
Ricardo Wurmus 011ec1e51b
gnu: Add udunits.
* gnu/packages/c.scm (udunits): New variable.
2019-03-24 23:44:12 +01:00
Ricardo Wurmus 2a35bb1509
gnu: Add r-snpmaxsel.
* gnu/packages/cran.scm (r-snpmaxsel): New variable.
2019-03-24 23:44:12 +01:00
Ricardo Wurmus ea87b4e37d
gnu: Add r-stepwise.
* gnu/packages/cran.scm (r-stepwise): New variable.
2019-03-24 23:44:12 +01:00
Oleg Pykhalov 64843c6b0f
gnu: perl-time-hires: Update source tarball URL.
* gnu/packages/perl.scm (perl-time-hires)[source]: Update URL.
2019-03-25 01:36:56 +03:00
Pkill -9 fab9aa1daa
gnu: Add xfce4-whiskermenu-plugin.
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-24 23:06:12 +01:00
Ludovic Courtès 48e595b7a8
gnu: Add loadkeys-static.
* gnu/packages/linux.scm (loadkeys-static): New variable.
2019-03-24 23:06:12 +01:00
Ludovic Courtès 16360cc884
gnu: flatpak: Use glib-or-gtk-build-system.
This wraps 'flatpak' such that GIO_EXTRA_MODULES is set, thereby
allowing GIO (part of GLib) to find the GnuTLS-based TLS backend that
glib-networking provides.

Fixes <https://bugs.gnu.org/34861>.
Reported by Raghav Gururajan <rvgn@disroot.org>.

* gnu/packages/package-management.scm (flatpak)[build-system]: Change to
GLIB-OR-GTK-BUILD-SYSTEM.
2019-03-24 23:06:10 +01:00
Tobias Geerinckx-Rice 37f6289605
gnu: avidemux: Update to 2.7.3.
* gnu/packages/video.scm (avidemux): Update to 2.7.3.
2019-03-24 23:51:09 +01:00
Ricardo Wurmus c30be23a6d
gnu: Add r-untb.
* gnu/packages/cran.scm (r-untb): New variable.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus 761c097ff5
gnu: Add r-brobdingnag.
* gnu/packages/cran.scm (r-brobdingnag): New variable.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus 459dcb95f4
gnu: Add r-partitions.
* gnu/packages/cran.scm (r-partitions): New variable.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus f33cb7ab7e
gnu: Add r-bedr.
* gnu/packages/cran.scm (r-bedr): New variable.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus 79db3a1a33
gnu: Add r-wgaim.
* gnu/packages/cran.scm (r-wgaim): New variable.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus f98d97c6f2
gnu: Add r-lemon.
* gnu/packages/cran.scm (r-lemon): New variable.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus 9ebb7f8181
gnu: r-phangorn: Update to 2.5.3.
* gnu/packages/bioinformatics.scm (r-phangorn): Update to 2.5.3.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus adfbda0fb0
gnu: r-gqtlstats: Update to 1.14.1.
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.14.1.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus 7a73c247b2
gnu: r-rbgl: Update to 1.58.2.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.2.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus 104ec4c9cf
gnu: r-getopt: Update to 1.20.3.
* gnu/packages/cran.scm (r-getopt): Update to 1.20.3.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus 3be585cf44
gnu: r-polynom: Update to 1.4-0.
* gnu/packages/cran.scm (r-polynom): Update to 1.4-0.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus 42e7552dc8
gnu: r-quantmod: Update to 0.4-14.
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-14.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus 6f2fa038ae
gnu: r-pls: Update to 2.7-1.
* gnu/packages/cran.scm (r-pls): Update to 2.7-1.
2019-03-24 20:36:51 +01:00
Ricardo Wurmus 3a4185872e
gnu: r-rcpparmadillo: Update to 0.9.300.2.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.300.2.0.
2019-03-24 20:36:50 +01:00
Ricardo Wurmus adf610718c
gnu: r-openssl: Update to 1.3.
* gnu/packages/statistics.scm (r-openssl): Update to 1.3.
2019-03-24 20:36:50 +01:00
Ricardo Wurmus d378e1a1c5
gnu: r-matrix: Update to 1.2-17.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-17.
2019-03-24 20:36:50 +01:00
Oleg Pykhalov da4cdc48fd
gnu: perl-package-stash: Update source tarball URL.
* gnu/packages/perl.scm (perl-package-stash)[source]: Update URL.
2019-03-24 22:13:42 +03:00
Oleg Pykhalov dff4dcb7fe
gnu: perl-package-stash-xs: Update source tarball URL.
* gnu/packages/perl.scm (perl-package-stash-xs)[source]: Update URL.
2019-03-24 22:13:36 +03:00
Tobias Geerinckx-Rice d9f7b116da
gnu: ddcutil: Update to 0.9.5.
* gnu/packages/hardware.scm (ddcutil): Update to 0.9.5.
2019-03-24 17:21:55 +01:00
Tobias Geerinckx-Rice 37bf216dfc
gnu: openmw: Don't use NAME in source URI.
* gnu/packages/game-development.scm (openmw)[source]: Hard-code NAME.
2019-03-24 17:21:55 +01:00
Tobias Geerinckx-Rice d00a8b8422
gnu: physfs: Update to 3.0.2.
* gnu/packages/game-development.scm (physfs): Update to 3.0.2.
2019-03-24 17:21:55 +01:00
Tobias Geerinckx-Rice e2015de69c
gnu: tiled: Update to 1.2.3.
* gnu/packages/game-development.scm (tiled): Update to 1.2.3.
2019-03-24 17:21:50 +01:00
Efraim Flashner f0e4cfcb0b
gnu: bennu-game-development: Build against openssl on all archictures.
* gnu/packages/game-development.scm (bennu-game-development)[arguments]:
Rename custom phase to 'patch-configure-to-use-openssl, change glob
pattern to match all cases. Return #t from all phases.
2019-03-24 16:34:28 +02:00
Efraim Flashner edf1ce60f7
gnu: bennu-game-development: Remove bundled code.
* gnu/packages/game-development.scm (bennu-game-development)[source]:
Add snippet to remove '3rdparty' folder from source code.
2019-03-24 16:34:25 +02:00
Julien Lepiller 8fd897888d
gnu: ocaml-gsl: Update to 1.24.0.
* gnu/packages/ocaml.scm (ocaml-gsl): Update to 1.24.0.
2019-03-24 15:28:20 +01:00
Julien Lepiller 8d135e3726
gnu: dune: Fix libdir.
* gnu/packages/ocaml.scm (dune): Install libraries in site-lib.
2019-03-24 15:28:15 +01:00
Julien Lepiller a1034ea0cc
gnu: ocaml-bos: Update to 0.2.0.
* gnu/packages/ocaml.scm (ocaml-bos): Update to 0.2.0.
2019-03-24 15:28:12 +01:00
Julien Lepiller d7d4102664
gnu: ocaml-react: Update to 1.2.1.
* gnu/packages/ocaml.scm (ocaml-react): Update to 1.2.1.
2019-03-24 15:27:49 +01:00
Pierre Neidhardt 24c4b012ee
gnu: Add bennu-game-development-modules.
* gnu/packages/game-development.scm (bennu-game-development-modules): New variable.
2019-03-24 14:00:32 +01:00
Pierre Neidhardt 4041fabb1f
gnu: Add bennu-game-development.
* gnu/packages/game-development.scm (bennu-game-development): New variable.
2019-03-24 13:56:16 +01:00
Marius Bakke b89bb804fe
gnu: perl-image-exiftool: Downgrade to 11.30.
* gnu/packages/photo.scm (perl-image-exiftool): Downgrade to 11.30.
2019-03-24 00:39:32 +01:00
Pkill -9 6f565d6c77
gnu: Add odamex.
* gnu/packages/games.scm (odamex): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-24 00:13:53 +01:00
Tobias Geerinckx-Rice 920c896c1a
gnu: filezilla: Update to 3.41.2 [security fixes].
* gnu/packages/ftp.scm (filezilla): Update to 3.41.2.
2019-03-24 01:09:53 +01:00
Tobias Geerinckx-Rice 80a699353b
gnu: asunder: Update to 2.9.3.
* gnu/packages/cdrom.scm (asunder): Update to 2.9.3.
2019-03-24 00:51:19 +01:00
Tobias Geerinckx-Rice 112dc8eb29
gnu: lynis: Update to 2.7.3.
* gnu/packages/admin.scm (lynis): Update to 2.7.3.
[native-inputs]: Update lynis-sdk, too.
2019-03-24 00:34:14 +01:00
Julien Lepiller 23c8a97a5b
gnu: ocaml-alcotest: Update to 0.8.5.
* gnu/packages/ocaml.scm (ocaml-alcotest): Update to 0.8.5.
2019-03-23 22:58:57 +01:00
Marius Bakke f92854fea1
gnu: ldb: Update to 1.6.3.
* gnu/packages/samba.scm (ldb): Update to 1.6.3.
2019-03-23 22:43:59 +01:00
Marius Bakke 7fd084aef5
gnu: tevent: Update to 0.10.0.
* gnu/packages/samba.scm (tevent): Update to 0.10.0.
2019-03-23 22:43:59 +01:00
Marius Bakke 42bdd5ef7c
gnu: talloc: Update to 2.2.0.
* gnu/packages/samba.scm (talloc): Update to 2.2.0.
2019-03-23 22:43:59 +01:00
Marius Bakke 5e7e193b71
gnu: tdb: Update to 1.4.0.
* gnu/packages/databases.scm (tdb): Update to 1.4.0.
2019-03-23 22:43:59 +01:00
Marius Bakke 3a2694df80
gnu: ffmpeg: Update to 4.1.2.
* gnu/packages/video.scm (ffmpeg): Update to 4.1.2.
2019-03-23 22:43:59 +01:00
Efraim Flashner f0f3f70b28
gnu: Add perl6-json.
* gnu/packages/perl6.scm (perl6-json): New variable.
2019-03-23 22:26:52 +02:00
Efraim Flashner cdecb8d72d
gnu: Add perl6-mime-base64.
* gnu/packages/perl6.scm (perl6-mime-base64): New variable.
2019-03-23 22:26:52 +02:00
Efraim Flashner c2bc5b2bc0
gnu: Add perl6-grammar-debugger.
* gnu/packages/perl6.scm (perl6-grammar-debugger): New variable.
2019-03-23 22:26:52 +02:00
Efraim Flashner 63b9f87ae4
gnu: Add perl6-grammar-profiler-simple.
* gnu/packages/perl6.scm (perl6-grammar-profiler-simple): New variable.
2019-03-23 22:26:51 +02:00
Efraim Flashner 979df8c452
gnu: Add perl6-test-mock.
* gnu/packages/perl6.scm (perl6-test-mock): New variable.
2019-03-23 22:26:51 +02:00
Efraim Flashner 56930271b9
gnu: Add perl6-oo-monitors.
* gnu/packages/perl6.scm (perl6-oo-monitors): New variable.
2019-03-23 22:26:51 +02:00
Efraim Flashner 4af1006440
gnu: Add perl6-terminal-ansicolor.
* gnu/packages/perl6.scm (perl6-terminal-ansicolor): New variable.
2019-03-23 22:26:51 +02:00
Efraim Flashner d02a30bd09
gnu: Add perl6-svg-plot.
* gnu/packages/perl6.scm (perl6-svg-plot): New variable.
2019-03-23 22:26:51 +02:00
Efraim Flashner 2bd04f9fc2
gnu: Add perl6-svg.
* gnu/packages/perl6.scm (perl6-svg): New variable.
2019-03-23 22:26:50 +02:00
Efraim Flashner 1af3f970e9
gnu: Add perl6-xml-writer.
* gnu/packages/perl6.scm (perl6-xml-writer): New variable.
2019-03-23 22:26:50 +02:00
Efraim Flashner de032eed5c
gnu: Add perl6-test-meta.
* gnu/packages/perl6.scm (perl6-test-meta): New variable.
2019-03-23 22:26:50 +02:00
Efraim Flashner 489f493384
gnu: Add perl6-license-spdx.
* gnu/packages/perl6.scm (perl6-license-spdx): New variable.
2019-03-23 22:26:50 +02:00
Efraim Flashner 505b979272
gnu: Add perl6-meta6.
* gnu/packages/perl6.scm (perl6-meta6): New variable.
2019-03-23 22:26:50 +02:00
Efraim Flashner ea856c08cd
gnu: Add perl6-json-class.
* gnu/packages/perl6.scm (perl6-json-class): New variable.
2019-03-23 22:26:50 +02:00
Efraim Flashner e1b3cf6891
gnu: Add perl6-json-marshal.
* gnu/packages/perl6.scm (perl6-json-marshal): New variable.
2019-03-23 22:26:49 +02:00
Efraim Flashner 56eea22137
gnu: Add perl6-json-unmarshal.
* gnu/packages/perl6.scm (perl6-json-unmarshal): New variable.
2019-03-23 22:26:49 +02:00
Efraim Flashner bc7c6efeaa
gnu: Add perl6-json-name.
* gnu/packages/perl6.scm (perl6-json-name): New variable.
2019-03-23 22:26:49 +02:00
Efraim Flashner 61b4364045
gnu: Add perl6-json-fast.
* gnu/packages/perl6.scm (perl6-json-fast): New variable.
2019-03-23 22:26:49 +02:00
Efraim Flashner 60945c67bb
gnu: Add perl6-uri.
* gnu/packages/perl6.scm (perl6-uri): New variable.
2019-03-23 22:26:49 +02:00
Efraim Flashner 74809e9e6f
gnu: Add perl6-zef.
* gnu/packages/perl6.scm (perl6-zef): New variable.
2019-03-23 22:26:48 +02:00
Efraim Flashner d617087718
gnu: Add perl6-tap-harness.
* gnu/packages/perl6.scm (perl6-tap-harness): New variable.
2019-03-23 22:26:48 +02:00
Efraim Flashner f7f8e767cd
gnu: Add rakudo.
* gnu/packages/perl6.scm (rakudo): New variable.
2019-03-23 22:26:48 +02:00
Efraim Flashner af2dec5bf3
gnu: Add nqp.
* gnu/packages/perl6.scm (nqp): New variable.
2019-03-23 22:26:47 +02:00
Efraim Flashner abc12b0d6e
gnu: Add moarvm.
* gnu/packages/perl6.scm (moarvm): New variable.
2019-03-23 22:26:47 +02:00
Efraim Flashner cf3f12f6e5
gnu: Add libtommath-1.0.
* gnu/packages/multiprecision.scm (libtommath-1.0): New variable.
2019-03-23 22:26:40 +02:00
Efraim Flashner 38a3f4df8f
gnu: perl-libwww: Update source uri.
This is a follow-up to e4a69686ab.

* gnu/packages/web.scm (perl-libwww)[source]: Update to new upstream uri.
2019-03-23 21:37:51 +02:00
Tobias Geerinckx-Rice 22c31e07a5
gnu: perl-plack-test-externalserver: Update to 0.02.
* gnu/packages/web.scm (perl-plack-test-externalserver): Update to 0.02.
2019-03-23 20:42:47 +01:00
Tobias Geerinckx-Rice 5bbe07a041
gnu: perl-finance-quote: Update to 1.47.
* gnu/packages/web.scm (perl-finance-quote): Update to 1.47.
2019-03-23 20:42:47 +01:00
Tobias Geerinckx-Rice f44678f663
gnu: perl-plack-middleware-removeredundantbody: Update to 0.07.
* gnu/packages/web.scm (perl-plack-middleware-removeredundantbody): Update to 0.07.
2019-03-23 20:42:47 +01:00
Tobias Geerinckx-Rice 73125149c1
gnu: perl-test-www-mechanize: Update to 1.52.
* gnu/packages/web.scm (perl-test-www-mechanize): Update to 1.52.
2019-03-23 20:38:29 +01:00
Tobias Geerinckx-Rice 5793d9fdc2
gnu: perl-plack-middleware-reverseproxy: Update to 0.16.
* gnu/packages/web.scm (perl-plack-middleware-reverseproxy): Update to 0.16.
2019-03-23 20:38:29 +01:00
Tobias Geerinckx-Rice b7a3bb101b
gnu: perl-test-tcp: Update to 2.19.
* gnu/packages/web.scm (perl-test-tcp): Update to 2.19.
2019-03-23 20:38:29 +01:00
Tobias Geerinckx-Rice 4035551b49
gnu: perl-cgi-simple: Update to 1.21.
* gnu/packages/web.scm (perl-cgi-simple): Update to 1.21.
2019-03-23 20:38:28 +01:00
Tobias Geerinckx-Rice 1c769c9724
gnu: perl-www-mechanize: Update to 1.91.
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.91.
2019-03-23 20:38:28 +01:00
Tobias Geerinckx-Rice 98db1c9bda
gnu: perl-html-lint: Update to 2.32.
* gnu/packages/web.scm (perl-html-lint): Update to 2.32.
2019-03-23 20:38:28 +01:00
Tobias Geerinckx-Rice e4a69686ab
gnu: perl-libwww: Update to 6.37.
* gnu/packages/web.scm (perl-libwww): Update to 6.37.
2019-03-23 20:38:28 +01:00
Tobias Geerinckx-Rice fa2d19ccd6
gnu: perl-crypt-openssl-random: Update to 0.15.
* gnu/packages/tls.scm (perl-crypt-openssl-random): Update to 0.15.
2019-03-23 20:38:28 +01:00
Tobias Geerinckx-Rice 42aa5c20b8
gnu: perl-class-c3-componentised: Update to 1.001002.
* gnu/packages/perl.scm (perl-class-c3-componentised): Update to 1.001002.
2019-03-23 20:38:28 +01:00
Tobias Geerinckx-Rice 5250d56446
gnu: perl-carp: Update to 1.50.
* gnu/packages/perl.scm (perl-carp): Update to 1.50.
2019-03-23 20:38:28 +01:00
Tobias Geerinckx-Rice bdd48dd799
gnu: perl-unicode-linebreak: Update to 2019.001.
* gnu/packages/perl.scm (perl-unicode-linebreak): Update to 2019.001.
2019-03-23 20:38:28 +01:00
Tobias Geerinckx-Rice 58f29e40f9
gnu: perl-text-unidecode: Update to 1.30.
* gnu/packages/perl.scm (perl-text-unidecode): Update to 1.30.
2019-03-23 20:38:28 +01:00
Tobias Geerinckx-Rice 91ee177731
gnu: perl-moose: Update to 2.2011.
* gnu/packages/perl.scm (perl-moose): Update to 2.2011.
2019-03-23 20:38:28 +01:00