b918473189
gnu: guix: Update snapshot.
...
* gnu/packages/package-management.scm (guix): Update to ff23b47
2017-11-13 11:31:27 +01:00
6b7490b340
gnu: ibus: Update to 1.5.17.
...
* gnu/packages/ibus.scm (ibus): Update to 1.5.17.
2017-11-13 10:19:26 +02:00
ce12b31157
gnu: ibus: Enable wayland support.
...
* gnu/packages/ibus.scm (ibus)[arguments]: Add configure flag to enable
wayland support.
[inputs]: Add wayland.
2017-11-13 10:19:26 +02:00
f35bb0711c
gnu: libsoup: Update to 2.60.2.
...
* gnu/packages/gnome.scm (libsoup): Update to 2.60.2.
2017-11-12 21:20:24 -05:00
c0d1fa64d0
gnu: imagemagick: Update to 6.9.9-23.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-23.
2017-11-12 17:50:01 -05:00
2560aa7adb
gnu: Remove unrar.
...
This package is abandoned upstream and contains serious bugs:
http://seclists.org/oss-sec/2017/q3/329
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14120
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14121
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14122
* gnu/packages/compression.scm (unrar): Remove variable.
2017-11-12 16:17:08 -05:00
8420c7a356
gnu: linux-libre: Change URL to HTTPS.
...
* gnu/packages/linux.scm (linux-libre): Change URL to HTTPS.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-12 15:46:44 -05:00
1650cf9284
gnu: mupdf: Unbundle mujs.
...
* gnu/packages/pdf.scm (mupdf)[source]: Remove bundled mujs.
[inputs]: Add mujs.
2017-11-12 19:39:21 +02:00
89ba894eb3
gnu: Add mujs.
...
* gnu/packages/javascript.scm (mujs): New variable.
2017-11-12 19:39:20 +02:00
76379dcace
gnu: mupdf: Use https.
...
* gnu/packages/pdf.scm (mupdf)[source]: Use https.
[home-page]: Same.
2017-11-12 19:39:20 +02:00
31f248fa2c
gnu: pdf.scm: Arrange modules alphabetically.
...
* gnu/packages/pdf.scm: Arrange modules alphabetically.
2017-11-12 19:39:17 +02:00
b07bfd06ee
gnu: lash: Don't build static libraries.
...
* gnu/packages/audio.scm (lash)[arguments]: Add configure-flag to
disable static libraries.
2017-11-12 12:04:49 +02:00
44df780768
gnu: lash: Don't build lashd.
...
This fixes bug#28174.
* gnu/packages/audio.scm (lash)[arguments]: Add phase to skip building lashd.
2017-11-12 12:04:46 +02:00
c7b433de47
gnu: glib-networking: Update to 2.54.1.
...
* gnu/packages/gnome.scm (glib-networking): Update to 2.54.1.
2017-11-12 01:17:10 -05:00
1e2a36e1b0
gnu: ffmpeg: Reduce the size of the closure.
...
* gnu/packages/video.scm (ffmpeg)[arguments]: Add new configure flags to
disable the html man pages and the static libraries.
2017-11-12 07:11:29 +02:00
7e0d513fb9
gnu: mupdf: Use Texinfo for the description.
...
* gnu/packages/pdf.scm (mupdf)[description]: Use Texinfo to mark up the
description.
2017-11-12 07:11:25 +02:00
b7ca42aa99
gnu: w3m: Find an editor in the environment.
...
* gnu/packages/w3m.scm (w3m)[arguments]: Pass an empty value for --with-editor
in #:configure-flags.
[source]: Use git-file-name.
2017-11-11 23:04:39 -05:00
882d921344
gnu: mupdf: Actually fix CVE-2017-15587.
...
The original fix could be removed by an optimizing compiler.
* gnu/packages/patches/mupdf-CVE-2017-15587.patch: Revise patch.
2017-11-11 22:34:24 -05:00
07cc9245e6
gnu: libusb-compat: Use the same home page as libusb.
...
* gnu/packages/libusb.scm (libusb-compat)[home-page]: Update.
2017-11-12 03:25:49 +01:00
5ade9bc769
gnu: fcgi: Fix typo in description.
...
* gnu/packages/web.scm (fcgi)[description]: Fix typo.
2017-11-12 03:25:48 +01:00
d1b5043947
gnu: fcgi: Use archived home page fork.
...
* gnu/packages/web.scm (fcgi)[home-page]: Use archived version.
2017-11-12 03:25:48 +01:00
9c2917f9e7
gnu: lynx: Use new home page.
...
* gnu/packages/web-browsers.scm (lynx)[home-page]: Update.
2017-11-12 03:25:47 +01:00
6862e4bfe7
gnu: perl-mime-types: Update to 2.14.
...
* gnu/packages/perl.scm (perl-mime-types): Update to 2.14.
2017-11-12 03:25:47 +01:00
f9035ef213
gnu: mailutils: Update to 3.4.
...
* gnu/packages/mail.scm (mailutils): Update to 3.4.
2017-11-11 23:21:54 +01:00
cda2e2c719
gnu: emacs-emms: Update to 4.4.
...
* gnu/packages/emacs.scm (emms): Update to 4.4.
2017-11-11 23:21:54 +01:00
327df26fbf
gnu: nyacc: Update to 0.82.4.
...
* gnu/packages/mes.scm (nyacc): Update to 0.82.4.
2017-11-11 23:11:04 +01:00
4564782c3d
gnu: nvi: Build with support for Unicode text.
...
* gnu/packages/nvi.scm (nvi)[arguments]: Pass '--enable-widechar'
to #:configure-flags.
2017-11-11 12:00:37 -05:00
56f35d92f5
gnu: lvm2: Update to 2.02.176.
...
* gnu/packages/linux.scm (lvm2): Update to 2.02.176.
2017-11-11 07:40:55 +01:00
ec03062171
gnu: libstaroffice: Update to 0.0.5.
...
* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.5.
2017-11-11 07:18:34 +01:00
45d5c80253
gnu: libvisio: Update to 0.1.6.
...
* gnu/packages/libreoffice.scm (libvisio): Update to 0.1.6.
[source](patches): Remove.
* gnu/packages/patches/libvisio-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-11 07:15:39 +01:00
7a9283a619
gnu: libetonyek: Update to 0.1.7.
...
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.7.
[source](patches): Remove.
[arguments]<#:phases>: Remove.
[native-inputs]: Remove AUTOCONF and AUTOMAKE.
* gnu/packages/patches/libetonyek-build-with-mdds-1.2.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-11 07:13:01 +01:00
074ff555ab
gnu: libreoffice: Update to 5.3.7.2 and enable GTK3.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.7.2
[source]: Change URL to HTTPS.
[inputs]: Add gtk+.
[configure-flags]: Remove "--disable-gtk3".
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-11 07:03:06 +01:00
ce1ac8eea6
gnu: python2-rpython: Update to 0.2.1.
...
* gnu/packages/python.scm (python2-rpython): Update to 0.2.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-11 07:00:22 +01:00
e65acb3124
gnu: python-sympy: Update to 1.1.1.
...
* gnu/packages/python.scm (python-sympy, python2-sympy): Update to 1.1.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-11 06:57:00 +01:00
e077e7da7f
gnu: python-sqlparse: Fix syntax error.
...
This is a follow-up to commit 8d688cd27f
2017-11-11 06:40:50 +01:00
8d688cd27f
gnu: python-sqlparse: Update to 0.2.4.
...
* gnu/packages/python.scm (python-sqlparse, python2-sqlparse): Update to
0.2.4.
[arguments]: Don't invoke ‘2to3’.
2017-11-11 05:17:59 +01:00
795ec760e4
install: Fix typo.
...
* gnu/system/install.scm (installation-os): Fix typo in comment.
2017-11-11 05:17:59 +01:00
9629c6b4b2
gnu: cyrus-sasl: Use new home page.
...
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[home-page]: Update.
2017-11-11 05:17:58 +01:00
11ed4108fb
gnu: methylkit: Use new home page.
...
* gnu/packages/bioinformatics.scm (methylkit)[home-page]: Update.
2017-11-11 05:17:58 +01:00
7c087150ec
gnu: vsearch: Update to 2.6.0.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.6.0.
2017-11-11 09:33:16 +10:00
74c0aeb027
gnu: webkitgtk: Update to 2.18.3 [fixes CVE-2017-{13788,13798,13803}].
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.3.
2017-11-10 12:48:15 -05:00
adf7e69cab
gnu: qemu: Fix CVE-2017-{15038,15268,15289}.
...
* gnu/packages/patches/qemu-CVE-2017-15038.patch,
gnu/packages/patches/qemu-CVE-2017-15268.patch,
gnu/packages/patches/qemu-CVE-2017-15289.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2017-11-10 12:16:31 -05:00
d4d7d70912
gnu: Fix hunspell-dict-en-* dictionary installation.
...
* gnu/packages/aspell.scm (aspell-word-list)[arguments]: Install the .dic file
for all hunspell dictionaries.
2017-11-10 11:59:09 -05:00
0af4df7e61
gnu: cutadapt: Update to 1.14.
...
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.14.
2017-11-10 15:32:42 +01:00
ae451b9dc2
gnu: synergy: Fix minor problems with the package definitions.
...
* gnu/packages/synergy.scm (synergy)[source]: Return #t in the snippet.
[arguments]: Let build phases return #t; fix typo in comment.
[home-page]: Change to redirection target.
[description]: Fix typo.
2017-11-10 15:19:06 +01:00
177475cfb5
gnu: password-store: Install passmenu script.
...
* gnu/packages/password-utils (password-store)
[inputs]: Add dmenu and xdotool.
[arguments]<#:phases>['patch-passmenu-path']: New phase.
[arguments]<#:phases>['install-passmenu']: New phase.
2017-11-10 14:22:28 +01:00
011f57695a
gnu: Add Epson escpr printer driver.
...
* gnu/packages/cups.scm (escpr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-10 13:07:54 +01:00
179b7ac66d
gnu: postgresql@9.6: Update to 9.6.6 [security fixes].
...
This fixes CVE-2017-12172, CVE-2017-15098, CVE-2017-15099.
* gnu/packages/databases.scm (postgresql@9.6): Update to 9.6.6.
2017-11-10 10:24:13 +02:00
74bea6a036
gnu: linux-libre: Update to 4.13.12.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.12.
(%linux-libre-hash): Update hash.
2017-11-09 21:11:00 -05:00
4cacbf33a6
gnu: linux-libre@4.9: Update to 4.9.61.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.61.
2017-11-09 21:10:14 -05:00
3a79bd03ff
gnu: linux-libre@4.4: Update to 4.4.97.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.97.
2017-11-09 21:09:34 -05:00
f8071bea91
gnu: linux-libre@4.1: Update to 4.1.46.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.46.
2017-11-09 21:08:51 -05:00
3c3d20c8f3
gnu: libpsl: Update to 0.19.1.
...
* gnu/packages/web.scm (libpsl): Update to 0.19.1.
2017-11-10 02:37:15 +01:00
1d8e73ba67
gnu: postgresql: Update to 10.1 [security fixes].
...
Fixes CVE-2017-12172, CVE-2017-15098 and CVE-2017-15099.
* gnu/packages/databases.scm (postgresql): Update to 10.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-10 01:22:53 +01:00
e99f045cc8
gnu: Add r-directlabels.
...
* gnu/packages/statistics.scm (r-directlabels): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
d3150731a8
gnu: emacs-ahungry-theme: Update to 1.8.0.
...
* gnu/packages/emacs.scm (emacs-ahungry-theme): Update to 1.8.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
f021382be4
gnu: Add nxbelld.
...
* gnu/packages/xdisorg.scm (nxbelld): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
d8f075c3a3
gnu: %intel-compatible-systems: Re-add variable.
...
This is a follow-up to cfbe7b7f4c
2017-11-09 22:25:48 +02:00
cfbe7b7f4c
gnu: linux: Add linux-libre arm kernel.
...
* Makefile.am (AUX_FILES): Add arm config file.
* gnu/packages/aux-files/linux-libre/4.13-arm.conf: New file.
* gnu/packages/linux.scm (%intel-compatible-systems): Rename to
%linux-compatible-systems and add "armhf-linux".
(linux-libre): Adapt consequently.
The config file for arm is taken from debian armmp kernel. It's a generic
firmware for ARMv7 multiplatform compatible SoCs.
2017-11-09 20:35:11 +01:00
3694a9b33b
gnu: chromaprint: Update to 1.4.2.
...
* gnu/packages/mp3.scm (chromaprint): Update to 1.4.2.
2017-11-09 13:23:39 -05:00
ad9b8987f3
gnu: libwnck: Update to 3.24.1.
...
* gnu/packages/gnome.scm (libwnck): Update to 3.24.1.
2017-11-09 12:17:37 -05:00
5475749960
system: Do not set 'TZ'.
...
Fixes <https://bugs.gnu.org/29212 >.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.
* gnu/system.scm (operating-system-environment-variables): Remove "TZ".
2017-11-09 09:59:21 +01:00
da4a707c88
gnu: roary: Update to 3.11.0.
...
* gnu/packages/bioinformatics.scm (roary): Update to 3.11.0.
[inputs]: Add perl-digest-md5-file.
2017-11-09 18:12:32 +10:00
e5f748a6c0
gnu: totem: Enable parallel build.
...
* gnu/packages/gnome.scm (totem)[arguments]: Set #:parallel-build? to #t
implicitly.
2017-11-08 20:43:40 -05:00
8f220b7b41
gnu: tremc: Update to 0.9.0-1.9755b50.
...
* gnu/packages/bittorrent.scm (tremc): Update to 0.9.0-1.9755b50.
[version]: Use git-version.
[source]: Use git-file-name.
2017-11-08 19:32:32 -05:00
ea1f073d73
gnu: slurm: Update to 16.05.11 [fixes CVE-2017-15566].
...
* gnu/packages/parallel.scm (slurm): Update to 16.05.11.
[source]: Use the recommended download URL.
2017-11-08 19:32:31 -05:00
a3dd13ae0e
gnu: rpm: Update to 4.13.0.2 [fixes CVE-2017-{7500,7501}].
...
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.2.
2017-11-08 19:00:07 -05:00
7df4194b16
gnu: python-icalendar: Update to 4.0.0.
...
* gnu/packages/python.scm (python-icalendar): Update to 4.0.0.
2017-11-08 18:36:29 -05:00
03b154f800
gnu: syncthing: Update to 0.14.40.
...
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.40.
[inputs]: Add go-github-com-zillode-notify.
2017-11-08 17:24:02 -05:00
52ff28e4aa
gnu: Add go-github-com-zillode-notify.
...
* gnu/packages/syncthing.scm (go-github-com-zillode-notify): New variable.
2017-11-08 17:24:01 -05:00
4cf6827de3
gnu: go-github-com-audriusbutkevicius-kcp-go: Update to 0.0.0-1.8ae5f52.
...
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-kcp-go):
Update to 0.0.0-1.8ae5f52.
[propagated-inputs]: Add go-github-com-tjfoc-gmsm-sm4.
2017-11-08 17:24:01 -05:00
f44169c2a7
gnu: Add go-github-com-tjfoc-gmsm-sm4.
...
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): New variable.
2017-11-08 17:24:01 -05:00
49483f7138
services: Add 'lookup-service-types'.
...
* gnu/services.scm (lookup-service-types): New procedure.
* tests/services.scm ("lookup-service-types"): New test.
2017-11-08 22:31:58 +01:00
3943913fac
services: 'fold-service-types' includes (gnu services).
...
* gnu/services.scm (all-service-modules): New procedure.
(fold-service-types): Use it for the default MODULES value.
2017-11-08 22:31:58 +01:00
a3d37f3ae5
services: 'fold-service-types' honors its seed.
...
* gnu/services.scm (fold-service-types): Use SEED instead of '().
2017-11-08 22:31:58 +01:00
0af94ad52f
gnu: service: Update comment.
...
* gnu/services/base.scm (guix-activation): Update comment.
2017-11-08 18:23:06 +01:00
d9565f7d87
install: Use overlayfs instead of unionfs.
...
I dediced to keep adding /tmp as tmpfs since I was not able to trigger bug
while still using unionfs, so I could not verify whether this mount is still
needed with overlayfs. Mapping /tmp to tmpfs does not harm, so we are on the
save side.
* gnu/system/install.scm (make-cow-store): Mount /gnu/store without additional
read-only bind-mount, since in overlayfs the "lower" level is always
read-only. Add work-dir required by overlayfs. No need to sleep anymore
since now using the mount syscall. [unionfs]: Remove now unused function.
(%installation-services): Update comment.
(installation-os)[file-systems]: Update comment.
2017-11-08 18:23:06 +01:00
c828969036
build: Use overlayfs instead of unionfs.
...
Overlayfs is part of the kernel, while unionfs needs FUSE. This also reduces
the size of the initrd by ca. 4.3% (487K).
* gnu/build/linux-boot.scm (mount-root-file-system): Remove optional parameter
"unionfs"; mount using overlayfs instead of unionfs; new directory layout
requied by overlayfs; update documentation.
[mark-as-not-killable]: Remove now unused function
* gnu/system/linux-initrd.scm (file-system-packages): Remove now unused
packages "unionfs-fuse/static" and thus unused related 'if'.
(linux-modules): Replace "fuse" by "overlay".
2017-11-08 18:23:05 +01:00
34260a10d7
gnu: miso: Use pypi-uri.
...
* gnu/packages/bioinformatics.scm (miso)[source]: Use pypi-uri.
2017-11-08 17:41:08 +01:00
e5c17b8d9d
gnu: Add r-vcd.
...
* gnu/packages/cran.scm (r-vcd): New variable.
2017-11-08 17:34:35 +01:00
018cf270a3
gnu: Add r-laeken.
...
* gnu/packages/cran.scm (r-laeken): New variable.
2017-11-08 17:34:11 +01:00
697e341e74
gnu: fastcap: Use texlive-tiny.
...
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive with
texlive-tiny.
[arguments]: Fix indentation; set HOME in "make-pdf" phase to avoid font
errors with texlive-tiny.
2017-11-08 17:15:24 +01:00
7e3aca2b78
gnu: librecad: Fix build.
...
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"patch-boost-error".
2017-11-08 16:21:54 +01:00
b72b42cf02
gnu: Add r-performanceanalytics.
...
* gnu/packages/cran.scm (r-performanceanalytics): New variable.
2017-11-08 16:21:54 +01:00
3699383e6f
gnu: Add r-xts.
...
* gnu/packages/cran.scm (r-xts): New variable.
2017-11-08 16:21:53 +01:00
5a80c15c14
gnu: Remove "open source" from descriptions.
...
All software in Guix is Free Software.
* gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string.
* gnu/packages/firmware.scm (seabios)[description]: Likewise.
* gnu/packages/libupnp.scm (libupnp)[description]: Likewise.
* gnu/packages/maths.scm (cubicle)[description]: Likewise.
* gnu/packages/mingw.scm (mingw-w64)[description]: Likewise.
* gnu/packages/game-development.scm (openmw)[description]: Likewise.
[synopsis]: Remove "Free software".
2017-11-08 16:21:53 +01:00
88fb156288
gnu: pcb: Update to 4.0.2.
...
* gnu/packages/engineering.scm (pcb): Update to 4.0.2.
[arguments]: Add build phase "fix-check-for-display".
2017-11-08 16:21:53 +01:00
c8b38f8ea6
gnu: time: Update license.
...
* gnu/packages/time.scm (time)[license]: Change to gpl3+.
2017-11-08 10:52:09 +02:00
dd00e0919f
gnu: time: Update to 1.8.
...
* gnu/packages/time.scm (time): Update to 1.8.
[arguments]: Remove custom 'configure phase.
2017-11-08 10:49:19 +02:00
12a24ee878
gnu: Add glusterfs.
...
* gnu/packages/file-systems.scm (glusterfs): New variable.
2017-11-07 23:32:46 +01:00
2e648d2bc4
gnu: r-prabclus: Update description.
...
* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
2017-11-07 23:32:46 +01:00
14e5f6b20a
gnu: r-fdrtool: Update description.
...
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
2017-11-07 23:32:46 +01:00
738dda8330
gnu: Add r-bbmle.
...
* gnu/packages/cran.scm (r-bbmle): New variable.
2017-11-07 23:32:46 +01:00
7b0569c0a9
gnu: Add r-rsofia.
...
* gnu/packages/cran.scm (r-rsofia): New variable.
2017-11-07 23:32:46 +01:00
c49102ecca
gnu: Add r-hitc.
...
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
2017-11-07 23:32:45 +01:00
30eb4e37c8
gnu: Add r-fithic.
...
* gnu/packages/bioinformatics.scm (r-fithic): New variable.
2017-11-07 23:32:45 +01:00
fbf5440637
gnu: Add r-sushi.
...
* gnu/packages/bioinformatics.scm (r-sushi): New variable.
2017-11-07 23:32:45 +01:00
9232cac410
gnu: Add r-vioplot.
...
* gnu/packages/cran.scm (r-vioplot): New variable.
2017-11-07 23:32:45 +01:00
3a22732cd8
gnu: Add r-sm.
...
* gnu/packages/cran.scm (r-sm): New variable.
2017-11-07 23:32:45 +01:00
2e4ce60e7c
gnu: Add r-gwascat.
...
* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
2017-11-07 23:32:44 +01:00
4272000661
gnu: Add r-gviz.
...
* gnu/packages/bioinformatics.scm (r-gviz): New variable.
2017-11-07 23:32:44 +01:00
794ff347a9
gnu: Add r-gqtlstats.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): New variable.
2017-11-07 23:32:44 +01:00
7fd5f60b8f
gnu: Add r-hardyweinberg.
...
* gnu/packages/cran.scm (r-hardyweinberg): New variable.
2017-11-07 23:32:44 +01:00
10e16fa93d
gnu: Add r-mice.
...
* gnu/packages/cran.scm (r-mice): New variable.
2017-11-07 23:32:44 +01:00
66c39102e5
gnu: Add r-ldblock.
...
* gnu/packages/bioinformatics.scm (r-ldblock): New variable.
2017-11-07 23:32:44 +01:00
15f98b0d23
gnu: Add r-erma.
...
* gnu/packages/bioinformatics.scm (r-erma): New variable.
2017-11-07 23:32:43 +01:00
421c68e3f7
gnu: Add r-homo-sapiens.
...
* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
2017-11-07 23:32:43 +01:00
b52a866d14
gnu: Add r-org-hs-eg-db.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
2017-11-07 23:32:43 +01:00
dd5fc8b78e
gnu: Add r-snpstats.
...
* gnu/packages/bioinformatics.scm (r-snpstats): New variable.
2017-11-07 23:32:43 +01:00
e2b927993e
gnu: Add r-gqtlbase.
...
* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable.
2017-11-07 23:32:43 +01:00
96a392a0b2
gnu: Add r-gprofiler.
...
* gnu/packages/bioinformatics.scm (r-gprofiler): New variable.
2017-11-07 23:32:42 +01:00
60faf94597
gnu: Add r-ggbio.
...
* gnu/packages/bioinformatics.scm (r-ggbio): New variable.
2017-11-07 23:32:42 +01:00
7af1f40373
gnu: Add r-biovizbase.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): New variable.
2017-11-07 23:32:42 +01:00
2f6f61fd8e
gnu: Add r-organismdbi.
...
* gnu/packages/bioinformatics.scm (r-organismdbi): New variable.
2017-11-07 23:32:42 +01:00
aa30ab5aee
gnu: Add r-ensembldb.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): New variable.
2017-11-07 23:32:42 +01:00
763e98103a
gnu: Add r-annotationfilter.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
2017-11-07 23:32:42 +01:00
04e2a2e969
gnu: Add r-dirichletmultinomial.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): New variable.
2017-11-07 23:32:41 +01:00
3af149f524
gnu: Add r-complexheatmap.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): New variable.
2017-11-07 23:32:41 +01:00
902fb15d92
gnu: Add r-genomicfiles.
...
* gnu/packages/bioinformatics.scm (r-genomicfiles): New variable.
2017-11-07 23:32:41 +01:00
cd215877a0
gnu: bdftopcf: Update to 1.1.
...
* gnu/packages/xorg.scm (bdftopcf): Update to 1.1.
[native-inputs]: Change from LIBXFONT to LIBXFONT2.
2017-11-07 23:29:23 +01:00
d469bc09bd
gnu: feh: Update to 2.22.2.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.22.2.
2017-11-07 22:16:27 +01:00
625492ee1a
gnu: gcc-4.7: Resurrect building with gcc-5.4.0.
...
* gnu/packages/patches/gcc-4-compile-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-4.7): Use it.
2017-11-07 22:03:51 +01:00
a67f094671
gnu: Add websockify.
...
* gnu/packages/web.scm (websockify): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:56:42 +01:00
75d342ffa9
gnu: Add python-networkx2.
...
* gnu/packages/python.scm (python-networkx2, python2-networkx2): New variables.
* gnu/local.mk (dist_patch_DATA): Register 'python-networkx2-reproducible-build.patch'.
* gnu/packages/patches/python-networkx2-reproducible-build.patch: New file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:17:20 +01:00
2b295f5a2f
gnu: Add python-pydot.
...
* gnu/packages/graphviz.scm (python-pydot, python2-pydot): New variables.
Modified-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:03:15 +01:00
38ad27da80
gnu: mercurial: Update to 4.4.1.
...
* gnu/packages/version-control.scm (mercurial): Update to 4.4.1.
2017-11-07 20:23:29 +01:00
4a30c1c0e2
gnu: vim: Update to 8.0.1274 [fixes CVE-2017-1000382].
...
* gnu/packages/vim.scm (vim): Update to 8.0.1274.
2017-11-07 20:21:46 +01:00
31a963fe80
gnu: notmuch: Update to 0.25.2.
...
* gnu/packages/mail.scm (notmuch): Update to 0.25.2.
2017-11-07 20:01:03 +01:00
9129804230
gnu: psm: Only use as an input on supported-systems.
...
Syntax help supplied by bavier@member.fsf.org
* gnu/packages/linux.scm (libfabric)[inputs]: Only use psm as an input
on systems where psm is supported.
* gnu/packages/mpi.scm (openmpi)[inputs]: Same.
2017-11-07 20:41:08 +02:00
b516b78002
gnu: psm: Limit supported systems.
...
* gnu/packages/linux.scm (psm)[supported-systems]: New field, limit to
i686-linux and x86_64-linux.
2017-11-07 20:41:05 +02:00
174807b9a4
gnu: gnupg: Update to 2.2.2.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.2.
2017-11-07 19:34:29 +02:00
2f17187ff3
gnu: mediainfo: Change order of custom phases.
...
* gnu/packages/video.scm (mediainfo)[arguments]: Change to the build
directory before executing the autogen script.
2017-11-07 19:34:25 +02:00
6541673354
gnu: linux: Fix kconfig selection.
...
* gnu/packages/linux.scm (make-linux-libre): When cross-compiling,
"kconfig" field is in native-inputs variable. So config is always #f
when cross-compiling linux.
2017-11-07 18:16:02 +01:00
f4433d09a1
gnu: openmpi: Add dependency on PSM.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
7bc05ef0ac
gnu: libfabric: Add dependency on PSM.
...
* gnu/packages/linux.scm (libfabric)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
fd23d259cd
gnu: Add PSM.
...
* gnu/packages/linux.scm (psm): New variable.
* gnu/packages/patches/psm-arch.patch,
gnu/packages/patches/psm-ldflags.patch,
gnu/packages/patches/psm-repro.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-11-07 18:09:13 +01:00
63b7fbe1bb
gnu: diffoscope: Update to 88.
...
* gnu/packages/package-management.scm (diffoscope): Update to 88.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
db0164b21f
gnu: awesome: Update to 4.2.
...
* gnu/packages/wm.scm (awesome): Update to 4.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
3eda8dd614
services: gdm: Add environment variables.
...
While not an optimal solution (see comment), this makes GDM functional.
* gnu/services/xorg.scm (gdm-shepherd-service): Set PATH and XDG_DATA_DIRS
environment variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
51bc8357e8
gnu: gdm: Add configure flags for better defaults.
...
* gnu/packages/gnome.scm (gdm)[arguments]<#:configure-flags>: Add
--with-initial-vt=7 and --enable-gdm-xsession.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
950d8e5d8c
gnu: gdm: Fix config file path.
...
* gnu/packages/gnome.scm (gdm)[arguments]<#:phases>: Fix the
'pre-configure phase so that GDM finds its config file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
ad54924285
gnu: expect: Change home-page to http://expect.sourceforge.net/ .
...
* gnu/packages/tcl.scm (expect): Change home-page to
http://expect.sourceforge.net/ .
2017-11-07 18:50:46 +03:00
e160aa1f81
gnu: Add r-gage.
...
* gnu/packages/bioinformatics.scm (r-gage): New variable.
2017-11-07 12:39:51 +01:00
3121814ef1
gnu: Add r-keggrest.
...
* gnu/packages/bioinformatics.scm (r-keggrest): New variable.
2017-11-07 12:39:51 +01:00
a9540107c6
gnu: antlr3-3.3: Prettify build phases.
...
* gnu/packages/java.scm (antlr3-3.3)[arguments]: Prettify build phases
"bin-install" and "generate-grammar".
2017-11-07 12:39:50 +01:00
9ecc4c69eb
gnu: r-servr: Update to 0.8.
...
* gnu/packages/web.scm (r-servr): Update to 0.8.
2017-11-07 08:15:45 +01:00
60ec9da3aa
gnu: r-tidyselect: Update to 0.2.3.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
2017-11-07 08:15:44 +01:00
baa00ee90d
gnu: r-msnbase: Update to 2.4.0.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.0.
[propagated-inputs]: Add r-lattice; remove r-reshape2.
2017-11-07 08:15:44 +01:00
39d9098def
gnu: r-mutationalpatterns: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.0.
[propagated-inputs]: Add r-cowplot, r-ggdendro, and r-s4vectors.
2017-11-07 08:15:44 +01:00
14b3c71911
gnu: r-annotationhub: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.0.
[propagated-inputs]: Add r-curl.
2017-11-07 08:15:44 +01:00
15ca195979
gnu: r-mzr: Remove bundled copy of boost.
...
* gnu/packages/bioinformatics.scm (r-mzr)[source]: Remove boost source.
[arguments]: Add build phase "use-system-boost" to link with our boost
package and avoid building the bundled sources.
2017-11-07 08:15:44 +01:00
34b9675449
gnu: r-mzr: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.12.0.
2017-11-07 08:15:43 +01:00
b500dbcdef
gnu: r-mzid: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.16.0.
2017-11-07 08:15:43 +01:00
eeaa6967f9
gnu: r-chipseq: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.28.0.
[propagated-inputs]: Add r-lattice.
2017-11-07 08:15:43 +01:00
158b6743dc
gnu: r-genomicfeatures: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.0.
[propagated-inputs]: Add r-rmysql.
2017-11-07 08:15:43 +01:00
74248d22a0
gnu: Add r-rmysql.
...
* gnu/packages/databases.scm (r-rmysql): New variable.
2017-11-07 08:15:43 +01:00
4dd469ef6d
gnu: r-rtracklayer: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.0.
[arguments]: Adjust patch to use system zlib.
2017-11-07 08:15:42 +01:00
a044c7f4c4
gnu: r-biocparallel: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.12.0.
[propagated-inputs]: Add r-bh.
2017-11-07 08:15:42 +01:00
42e11d3301
gnu: r-biomart: Update to 2.34.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.0.
[propagated-inputs]: Add r-progress and r-stringr.
2017-11-07 08:15:42 +01:00
010ab2ffd2
gnu: r-edger: Update to 3.20.1.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.1.
[propagated-inputs]: Add r-rcpp.
2017-11-07 08:15:42 +01:00
eb3f5cc76a
gnu: r-gostats: Update to 2.44.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.44.0.
[propagated-inputs]: Add r-rgraphviz.
2017-11-07 08:15:41 +01:00
2404cc4283
gnu: r-category: Update to 2.44.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.44.0.
[propagated-inputs]: Remove r-rsqlite; add r-dbi.
2017-11-07 08:15:41 +01:00
65a8cd6676
gnu: r-lubridate: Update to 1.7.1.
...
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.1.
[propagated-inputs]: Add r-rcpp.
2017-11-07 08:15:41 +01:00
689edf1153
gnu: r-preprocesscore: Update to 1.40.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.40.0.
2017-11-07 08:15:41 +01:00
e7f680f071
gnu: r-r-utils: Update to 2.6.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.6.0.
2017-11-07 08:15:41 +01:00
ecfe98a17a
gnu: r-openssl: Update to 0.9.8.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.8.
2017-11-07 08:15:40 +01:00
aced057fbc
gnu: r-rlang: Update to 0.1.4.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.4.
2017-11-07 08:15:40 +01:00
1be0f53664
gnu: r-vsn: Update to 3.46.0.
...
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.46.0.
[propagated-inputs]: Remove r-hexbin.
2017-11-07 08:15:40 +01:00
007424b5a5
gnu: r-motifrg: Rename input label.
...
* gnu/packages/bioinformatics.scm (r-motifrg)[propagated-inputs]:
Rename label of r-bsgenome-hsapiens-ucsc-hg19.
2017-11-07 08:15:40 +01:00
ce59d62519
gnu: r-motifrg: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.22.0.
2017-11-07 08:15:40 +01:00
98791c25c8
gnu: r-qvalue: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.10.0.
2017-11-07 08:15:39 +01:00
87fa5aface
gnu: r-fastseq: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-fastseq): Update to 1.24.0.
2017-11-07 08:15:39 +01:00
1567c8d91b
gnu: r-interactivedisplaybase: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to
1.16.0.
2017-11-07 08:15:39 +01:00
0096127974
gnu: r-edaseq: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.12.0.
2017-11-07 08:15:39 +01:00
22752bef3b
gnu: r-msnid: Update to 1.11.0.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.11.0.
2017-11-07 08:15:38 +01:00
8140f680ad
gnu: r-deseq: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.30.0.
2017-11-07 08:15:38 +01:00
531e80903f
gnu: r-aroma-light: Update to 3.8.0.
...
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.8.0.
2017-11-07 08:15:38 +01:00
a998c9a464
gnu: r-pcamethods: Update to 1.70.0.
...
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.70.0.
2017-11-07 08:15:38 +01:00
8a8138d248
gnu: r-affyio: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.48.0.
2017-11-07 08:15:38 +01:00
dad5f83817
gnu: r-affy: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.56.0.
2017-11-07 08:15:37 +01:00
9a665dfb6f
gnu: r-protgenerics: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.10.0.
2017-11-07 08:15:37 +01:00
617700895b
gnu: r-seqlogo: Update to 1.44.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.44.0.
2017-11-07 08:15:37 +01:00
e127c918f8
gnu: r-genomation: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.10.0.
[propagated-inputs]: Remove r-rhtslib.
[inputs]: Remove zlib.
2017-11-07 08:15:37 +01:00
e6ce4bf00d
gnu: r-impute: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.52.0.
2017-11-07 08:15:37 +01:00
0f948b116b
gnu: r-seqpattern: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.10.0.
2017-11-07 08:15:36 +01:00
e67850b40d
gnu: r-bsgenome: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.46.0.
2017-11-07 08:15:36 +01:00
d13a3fea7e
gnu: r-topgo: Update to 2.30.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.0.
2017-11-07 08:15:36 +01:00
aeb73879f6
gnu: r-graph: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.56.0.
2017-11-07 08:15:36 +01:00
96fb465174
gnu: r-genomicalignments: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.0.
2017-11-07 08:15:35 +01:00
6fcbed7329
gnu: r-summarizedexperiment: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.8.0.
2017-11-07 08:15:35 +01:00
cb0a9a7493
gnu: r-delayedarray: Update to 0.4.1.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.4.1.
2017-11-07 08:15:35 +01:00
f8068419a6
gnu: r-rsamtools: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.30.0.
2017-11-07 08:15:35 +01:00
b719435ebb
gnu: r-biostrings: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.46.0.
2017-11-07 08:15:35 +01:00
0f8d98f294
gnu: r-annotationdbi: Update to 1.40.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.40.0.
2017-11-07 08:15:34 +01:00
ca52123611
gnu: r-biobase: Update to 2.38.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.38.0.
2017-11-07 08:15:34 +01:00
aa5c1f61f1
gnu: r-genomicranges: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.0.
2017-11-07 08:15:34 +01:00
2b6ae8bfd5
gnu: r-xvector: Update to 0.18.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.18.0.
2017-11-07 08:15:34 +01:00
f642c0e4c7
gnu: r-limma: Update to 3.34.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.0.
2017-11-07 08:15:33 +01:00
7f1bac3528
gnu: r-variantannotation: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.0.
2017-11-07 08:15:33 +01:00
8aab0235e0
gnu: r-genomeinfodb: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.14.0.
2017-11-07 08:15:33 +01:00
9e482c2069
gnu: r-iranges: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.12.0.
2017-11-07 08:15:33 +01:00
41f0f94976
gnu: r-s4vectors: Update to 0.16.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.16.0.
2017-11-07 08:15:33 +01:00
2167eafc1d
gnu: r-biocstyle: Update to 2.6.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.0.
2017-11-07 08:15:32 +01:00
3241461670
gnu: r-biocinstaller: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.28.0.
2017-11-07 08:15:32 +01:00
d61fc4e104
gnu: r-biocgenerics: Update to 0.24.0.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.24.0.
2017-11-07 08:15:32 +01:00
704fe4d115
gnu: r-grohmm: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.12.0.
2017-11-07 08:15:32 +01:00
843826e262
gnu: r-shortread: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.0.
2017-11-07 08:15:31 +01:00
b53755258a
gnu: r-systempiper: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.12.0.
2017-11-07 08:15:31 +01:00
9f52e53d5d
gnu: r-gseabase: Update to 1.40.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.0.
2017-11-07 08:15:31 +01:00
fad7c0c7bd
gnu: r-sva: Update to 3.26.0.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.26.0.
2017-11-07 08:15:31 +01:00
91e1867972
gnu: r-methylkit: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.4.0.
2017-11-07 08:15:31 +01:00
c126ba69db
gnu: r-copywriter: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.10.0.
2017-11-07 08:15:30 +01:00
598dacf657
gnu: r-annotationfilter: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.2.0.
2017-11-07 08:15:30 +01:00
e6b332d43b
gnu: r-rhdf5: Update to 2.22.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.22.0.
2017-11-07 08:15:30 +01:00
19e8929cbd
gnu: r-tximport: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.6.0.
2017-11-07 08:15:30 +01:00
da153b7f94
gnu: r-bamsignals: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.10.0.
2017-11-07 08:15:30 +01:00
5c18470008
gnu: r-zlibbioc: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.24.0.
2017-11-07 08:15:29 +01:00
1d0263b44e
gnu: r-rhtslib: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.10.0.
2017-11-07 08:15:29 +01:00
c25154e5cb
gnu: r-rbgl: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.54.0.
2017-11-07 08:15:29 +01:00
727706ad38
gnu: r-annotationforge: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.20.0.
2017-11-07 08:15:29 +01:00
3fd010ff30
gnu: r-dexseq: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.0.
2017-11-07 08:15:28 +01:00
0166dc07ef
gnu: r-deseq2: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.0.
2017-11-07 08:15:28 +01:00
554fac74aa
gnu: r-genefilter: Update to 1.60.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.60.0.
2017-11-07 08:15:28 +01:00
cb4d3ff2c4
gnu: r-geneplotter: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.56.0.
2017-11-07 08:15:28 +01:00
2d4e887dc0
gnu: r-annotate: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.0.
2017-11-07 08:15:28 +01:00
94fd86e5e1
gnu: r-dnacopy: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.52.0.
2017-11-07 08:15:27 +01:00
c7782c3f1f
gnu: r-biocviews: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.46.0.
[propagated-inputs]: Remove r-knitr.
2017-11-07 08:15:27 +01:00
7373b4167a
gnu: r-bioccheck: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.14.0.
[native-inputs]: Remove which.
[propagated-inputs]: Add r-stringdist.
2017-11-07 08:15:27 +01:00
a40a04fdbb
gnu: Add r-stringdist.
...
* gnu/packages/cran.scm (r-stringdist): New variable.
2017-11-07 08:15:27 +01:00
8ca2b2b06e
gnu: r-rgraphviz: Update to 2.22.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.22.0.
2017-11-07 08:15:27 +01:00
a0e4b41b40
gnu: guile-git: Update snapshot.
...
* gnu/packages/guile.scm (guile-git): Update to commit 951a32c.
2017-11-07 00:12:11 +01:00
fedde43b6d
gnu: moka-icon-theme: Fix license.
...
* gnu/packages/gnome.scm (moka-icon-theme): Add cc-by-sa4.0 to license field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
550281fb5f
gnu: moka-icon-theme: Add faba-icon-theme as propagated input.
...
* gnu/packages/gnome.scm (moka-icon-theme)[propagated-inputs]: New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
8b0e4177ee
gnu: moka-icon-theme: Simplify package definition.
...
* gnu/packages/gnome.scm (moka-icon-theme): Inherit faba-icon-theme to avoid
duplicating similar package definition.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
d935e6a12c
gnu: Add faba-icon-theme.
...
* gnu/packages/gnome.scm (faba-icon-theme): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
47bd32d98e
gnu: electrum: Update to 3.0.
...
gnu/packages/finance.scm (electrum): Update to 3.0.
[inputs]: Change to python3 inputs.
[arguments]: Remove python-2. Disable tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:10 +01:00
ea0421bbf6
gnu: Add python-jsonrpclib-pelix.
...
* gnu/packages/python.scm (python-jsonrpclib-pelix, python2-jsonrpclib-pelix):
New variables.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:10 +01:00
96dc8f3527
packages: 'fold-packages' takes #:select? parameter.
...
* gnu/packages.scm (fold-packages): Add #:select? parameter and honor it.
2017-11-07 00:12:10 +01:00
0ad5f80982
Fix ambiguous imports.
...
* gnu/packages/ocaml.scm: Hide 'zip' from (srfi srfi-1).
* guix/git.scm: Select 'mkdir-p' from (guix build utils).
2017-11-07 00:12:10 +01:00
913027f383
gnu: nnn: Update to 1.5.
...
* gnu/packages/admin.scm (nnn): Update to 1.5.
2017-11-06 23:07:19 +02:00
6a534909fa
gnu: libuninameslist: Update to 20170807.
...
* gnu/packages/fontutils.scm (libuninameslist): Update to 20170807.
2017-11-06 23:07:13 +02:00
10b159a303
gnu: u-boot: Only install 'MLO' output if it exists.
...
* gnu/packages/bootloaders.scm (u-boot)[arguments]: Add 'MLO' to
uboot-files only if it has been built.
2017-11-06 22:54:28 +02:00
b1a3079347
system: vm: Use 2^32 - 1 as hash size.
...
* gnu/system/vm.scm (operating-system-uuid): Use 2^32 - 1 instead of
2^32 as hash size.
On some 32 bit system (ARM for example), 2^32 exceeds hash max
size (ULONG_MAX = 2^32 - 1).
2017-11-06 20:02:25 +01:00
dd208b936c
bootloaders: uboot: Add .img and MLO files to binary outputs.
...
* gnu/packages/bootloaders.scm (make-u-boot-package): Add .img and MLO files
as binary output.
2017-11-06 19:58:21 +01:00
f6948189a9
linux: Add omap2plus generic kernel.
...
* gnu/packages/linux.scm (linux-libre-arm-omap2plus): New exported variable.
2017-11-06 19:55:10 +01:00
2ac42fe51f
gnu: uboot: Fix same-arch? check.
...
* gnu/packages/bootloaders.scm (make-u-boot-package): Compare %current-system
to system associated to given triplet. Comparing a system and a triplet
didn't make sense.
2017-11-06 19:53:13 +01:00
d298e7652a
gnu: perl-test-www-mechanize-psgi: Update source uri.
...
* gnu/packages/web.scm (perl-test-www-mechanize-psgi)[source]: Update to
new source uri.
2017-11-06 20:39:45 +02:00
12c613b548
gnu: dtc: Build python bindings.
...
* gnu/packages/bootloaders.scm (dtc)[native-inputs]: Add swig.
[inputs]: Add python-2.
[arguments]: Remove 'NO_PYTHON' from make-flags, add 'SETUP_PREFIX' to
set python bindings prefix.
2017-11-06 20:39:45 +02:00
ab8757c5b1
gnu: dtc: Update to 1.4.5.
...
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.5.
[arguments]: Add NO_PYTHON flag to make-flags.
2017-11-06 20:39:45 +02:00
9371600ec8
gnu: libxres: Update to 1.2.0.
...
* gnu/packages/xorg.scm (libxres): Update to 1.2.0.
2017-11-06 20:02:45 +02:00
fd592a12e2
gnu: youtube-dl: Update to 2017.11.06.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.11.06.
2017-11-06 18:18:41 +01:00
8f4e3b95df
gnu: aria2: Update to 1.33.0.
...
* gnu/packages/bittorrent.scm (aria2): Update to 1.33.0.
2017-11-06 06:18:31 +02:00
08e1f38ddd
gnu: emacs-undo-tree: Parameterize source uri.
...
* gnu/packages/emacs.scm (emacs-undo-tree)[source]: Replace hard-coded
version with version parameter.
2017-11-06 06:18:26 +02:00
73cd4022d6
gnu: borg: Update to 1.1.2.
...
* gnu/packages/backup.scm (borg): Update to 1.1.2.
[arguments]: Disable another test in the 'check' phase.
2017-11-05 20:36:05 -05:00
d8799bd0df
gnu: netsurf: Update to 3.7.
...
For compatibility, dependents must be updated at the same time.
* gnu/packages/web.scm (libcss): Update to 0.7.0
(nsgenbind): Update to 0.5.
(netsurf): Update to 3.7.
[arguments]: Fix binary name in .desktop. Adjust "docs" directory name.
* gnu/packages/patches/netsurf-system-utf8proc.patch: Adjust to new source.
2017-11-05 07:46:08 -06:00
772588bd22
gnu: libnspsl: Update to 0.1.2.
...
* gnu/packages/web.scm (libnspsl): Update to 0.1.2.
2017-11-05 07:46:08 -06:00
f379c52f27
gnu: libnsgif: Update to 0.2.0.
...
* gnu/packages/web.scm (libnsgif): Update to 0.2.0.
2017-11-05 07:46:08 -06:00
b20d97f848
gnu: libsvgtiny: Update to 0.1.6.
...
* gnu/packages/web.scm (libsvgtiny): Update to 0.1.6.
2017-11-05 07:46:08 -06:00
036f47a37e
gnu: libdom: Update to 0.3.2.
...
* gnu/packages/web.scm (libdom): Update to 0.3.2.
2017-11-05 07:46:08 -06:00
e33f6efd60
gnu: libwapcaplet: Update to 0.4.0.
...
* gnu/packages/web.scm (libwapcaplet): Update to 0.4.0.
2017-11-05 07:46:08 -06:00
84dec7a0c0
gnu: hubbub: Update to 0.3.4.
...
* gnu/packages/web.scm (hubbub): Update to 0.3.4.
2017-11-05 07:46:07 -06:00
bf56082605
gnu: netsurf-buildsystem: Update to 1.6.
...
* gnu/packages/web.scm (netsurf-buildsystem): Update to 1.6.
2017-11-05 07:46:00 -06:00
511d8a02e8
gnu: emacs-evil: Update to 1.2.13.
...
* gnu/packages/emacs.scm (emacs-evil): Update to 1.2.13.
(source): Adjust URL to new upstream location on github.
(home-page): likewise.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:47 +01:00
db574f7183
gnu: emacs-slime: Use correct Texinfo commands in the description.
...
Previously the description had "@{something}" in it which is never
valid Texinfo. This commit changes it to use "@command{something}"
to render the full description.
* gnu/packages/emacs.scm (emacs-slime)[description]: Correct Texinfo usage.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:33 +01:00
77a7891b87
gnu: emacs-undo-tree: Update to 0.6.6.
...
* gnu/packages/emacs (emacs-undo-tree): Update to 0.6.6.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:20 +01:00
5fa1b4174a
gnu: emacs-which-key: Update to 3.0.2.
...
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.0.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:22:31 +01:00
9505877205
gnu: emacs-neotree: Update to 0.5.2.
...
* gnu/packages/emacs.scm (emacs-neotree): Update to 0.5.2.
[source](uri): Adjust URL to tag change.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:22:14 +01:00
aa70cf8c36
gnu: redis: Update to 4.0.2.
...
* gnu/packages/databases.scm (redis): Update to 4.0.2.
2017-11-05 19:03:32 +01:00
39f2433c39
gnu: sdl2: Update to 2.0.7 and enable Wayland backend.
...
* gnu/packages/sdl.scm (sdl2): Update to 2.0.7.
[inputs]: Add wayland, wayland-protocols, libxkbcommon.
[arguments]: Add '--disable-wayland-shared' to #:configure-flags.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 18:14:19 +01:00
7c5cc40097
gnu: add disorderfs.
...
* gnu/packages/file-systems.scm (disorderfs): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:50:48 +01:00
e55c46b850
gnu: python-decorator: Update to 4.1.2.
...
* gnu/packages/python.scm (python-decorator): Update to 4.1.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:27:42 +01:00
743d3f6502
gnu: calibre: Install mimetypes.
...
* gnu/packages/ebook.scm (calibre)[arguments]: Install mimetypes xml file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
9132212fb8
gnu: calibre: Add optipng as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add optipng.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
bf4a40db3c
gnu: calibre: Add python2-dukpy as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-dukpy. dukpy was
unbundled from Calibre, so we need to to use the Guix version.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
2e15906c1c
gnu: Add python-dukpy, python2-dukpy.
...
gnu/packages/python.scm (python-dukpy, python2-dukpy): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
7ed93a6c9e
gnu: calibre: Update to 3.11.1.
...
* gnu/packages/ebook.scm (calibre): Update to 3.11.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
540dd1c8cc
gnu: retroarch: Enable Wayland support.
...
* gnu/packages/games.scm (retroarch)[inputs]: Add wayland.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
ca1ddce8a3
gnu: weston: Update to 3.0.0.
...
* gnu/packages/freedesktop.scm (weston): Update to 3.0.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
8d2bde86ec
gnu: lollypop: Update to 0.9.304.
...
* gnu/packages/gnome.scm (lollypop): Update to 0.9.304.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
08d61397cd
gnu: gnome-terminal: Update to 3.26.2.
...
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.26.2.
2017-11-05 16:44:51 +01:00
68488f275d
gnu: vte: Update to 0.50.2.
...
* gnu/packages/gnome.scm (vte): Update to 0.50.2.
2017-11-05 16:44:50 +01:00
7561be8699
gnu: fio: Update to 3.2.
...
* gnu/packages/benchmark.scm (fio): Update to 3.2.
2017-11-05 16:16:51 +01:00
3c41b9929b
gnu: feh: Update to 2.22.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.22.
[native-search-paths]: New field.
2017-11-05 16:08:02 +01:00
21b71b01e9
services: Add 'description' fields.
...
* gnu/services/admin.scm (rottlog-service-type)
(tailon-service-type): Add 'description' field.
* gnu/services/audio.scm (mpd-service-type): Likewise.
* gnu/services/avahi.scm (avahi-service-type): Likewise.
* gnu/services/ssh.scm (lsh-service-type)
(openssh-service-type, dropbear-service-type): Likewise.
2017-11-05 15:29:52 +01:00
b6d2930d1f
services: Add murmur.
...
* gnu/services/telephony.scm: New file.
* gnu/local.mk: Add it.
* doc/guix.texi (Telephony Services): New node.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-05 15:21:53 +01:00
50c229caf9
gnu: fio: Update to 3.1.
...
* gnu/packages/benchmark.scm (fio): Update to 3.1.
2017-11-05 12:29:46 +02:00
1289001a5d
gnu: prison: Move to be in alphabetical order.
...
I was trapped be the definitions not being in alphabetical order.
* gnu/packages/kde-frameworks.scm (prison): Move in front of
solid.
2017-11-05 10:56:40 +01:00
a7dc855725
gnu: kdewebkit: Move to be in alphabetical order.
...
I was trapped by the definitions not being in alphabetical order.
* gnu/packages/kde-frameworks.scm (kdewebkit): Move in front of
kemoticons.
2017-11-05 10:56:40 +01:00
39d1a429fe
gnu: kactivities: Move to tier 2.
...
KDE now lists this package as tier 2, I was trapped by the
definitions being at the wrong place.
* gnu/packages/kde-frameworks.scm (kactivities): Move into the
"section" of tier 2 packages. (kactivities-stats) Remove now
obsolete comment.
2017-11-05 10:56:39 +01:00
571f1fa3b2
gnu: libksysguard: Update to 5.11.2.
...
* gnu/packages/kde.scm (libksysguard): Update to 5.11.2.
2017-11-05 10:56:39 +01:00
e8737735a2
gnu: solid: Enable building interface for qml.
...
* gnu/package/kde-frameworks.scm(solid)[inputs]: Add qtdeclarative.
2017-11-05 10:56:38 +01:00
b1beb1670b
gnu: krunner: Make some tests pass.
...
* gnu/packages/kde-frameworks.scm[arguments]
<#:tests?>: Remove.
<#:phases>[fix-paths-for-test'] New phase.
<#:phases>[check-setup]: Set $HOME. Blacklist a failing new-in-5.39.0 test.
2017-11-05 10:56:37 +01:00
5bc1efd77d
gnu: kdelibs4support: Make test kstandarddirstest pass.
...
* gnu/package/kde-frameworks.scm(kdelibs4support)[#:phases]
<check-post-install>: Add workaround for bug in test-case.
Update comment.
2017-11-05 10:56:36 +01:00
fa274ab2c0
gnu: kimageformats: Update comment.
...
* gnu/packages/kde-frameworks.scm(kimageformats): Update comment.
2017-11-05 10:56:36 +01:00
6211aadf4b
gnu: kde-frameworks: Update to 5.39.0.
...
Beside simple updating:
- ktexteditor: Add input.
- kdelibs4support: Enable test kmimetypetest, disable test kuniqueapptest.
- kimageformats: Make the plugins available for tests.
- krunner: Make old tests pass again. Blacklist a failing new test.
* gnu/packages/kde-frameworks.scm (attica, baloo, bluez-qt, breeze-icons,
extra-cmake-modules, kactivities, kactivities-stats, kapidox, karchive,
kauth, kbookmarks, kcmutils, kcodecs, kcompletion, kconfig, kconfigwidgets,
kcoreaddons, kcrash, kdbusaddons, kdeclarative, kded,
kde-frameworkintegration, kdelibs4support, kdesignerplugin, kdesu,
kdewebkit, kdnssd, kdoctools, kemoticons, kfilemetadata, kglobalaccel,
kguiaddons, khtml, ki18n, kiconthemes, kidletime, kimageformats, kinit, kio,
kitemmodels, kitemviews, kjobwidgets, kjs, kjsembed, kmediaplayer,
knewstuff, knotifications, knotifyconfig, kpackage, kparts, kpeople,
kplotting, kpty, kross, krunner, kservice, ksyntaxhighlighting,
ktextwidgets, kunitconversion, kwallet, kwayland, kwidgetsaddons,
kwindowsystem, kxmlgui, kxmlrpcclient, modemmanager-qt, networkmanager-qt,
oxygen-icons, plasma-framework, prison, solid, sonnet, threadweaver): Update
to 5.39.0
(ktexteditor) Update to 5.39.0. [source]: Add patch. [inputs]: Add
qtdeclarative.
(kdelibs4support): Update to 5.39.0. [#:phase check-post-install]: Remove
kmimetypetest from and add kuniqueapptest to list of test to be excluded
when running ctest.
(kimageformats): Update to 5.39.0. [#:phase check-setup] Make the plugins
available for tests.
* gnu/packages/patches/ktexteditor-5.39.0-autotests-dependencies.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-11-05 10:56:35 +01:00
9f5bd38f94
gnu: extra-cmake-modules: Install pri-files into lib/qt5/.
...
This in accordance with the documentation in
ECMGeneratePriFile.cmake: "Packagers … want to set
`ECM_MKSPECS_INSTALL_DIR` to something like
`share/qt5/mkspecs/modules`." Our Qt5 is putting pri-files into
`lib/qt5/mkspecs/modules`.
* gnu/packages/kde-frameworks.scm(extra-cmake-modules)[#:phase fix-lib-path]:
New substitute for file 'modules/ECMGeneratePriFile.cmake'.
2017-11-05 10:56:34 +01:00
46dea1241c
gnu: icedtea: Update to 3.6.0 [security fixes].
...
Fixes CVE-2017-{10274,10821,10825,10295,10388,10346,10350,10347,10349,10345,
10348,10357,10355,10356,10165} and CVE-2016-{10165,9840,9841,9842,9843}.
* gnu/packages/java.scm (icedtea-8): Update to 3.6.0.
[native-inputs]: Update dependency hashes.
2017-11-04 15:33:59 +01:00
171ba2480f
gnu: diamond: Update to 0.9.12.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.12.
2017-11-04 10:51:44 +10:00
d3f140218b
gnu: sssd: Disable failing test.
...
* gnu/packages/sssd.scm (sssd)[arguments]<#:phases>: Add substitution to
'disable-failing-test' phase.
2017-11-04 00:07:40 +01:00
f1ae27b608
gnu: samba: Update to 4.7.1.
...
* gnu/packages/samba.scm (samba): Update to 4.7.1.
2017-11-04 00:07:40 +01:00
ad25310dd5
gnu: ldb: Update to 1.3.0.
...
* gnu/packages/samba.scm (ldb): Update to 1.3.0.
2017-11-04 00:07:40 +01:00
d94c679254
gnu: re2: Update to 2017-11-01.
...
* gnu/packages/regex.scm (re2): Update to 2017-11-01.
2017-11-04 00:07:39 +01:00
1695bd788d
gnu: libxfont@1: Update to 1.5.3.
...
* gnu/packages/xorg.scm (libxfont): Update to 1.5.3.
[source](patches): Remove.
2017-11-04 00:07:39 +01:00
66865ab8ac
gnu: multiqc: Update to 1.3.
...
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.3.
[propagated-inputs]: Add python-enum34.
[license]: The license was changed to "GPLv3 or later" with this release.
2017-11-03 17:18:52 +01:00
416ad6feaa
gnu: iso-codes: Update to 3.76.
...
* gnu/packages/iso-codes.scm (iso-codes): Update to 3.76.
2017-11-03 09:34:13 -04:00
b12c6a664d
gnu: r-ape: Update to 5.0.
...
* gnu/packages/bioinformatics.scm (r-ape): Update to 5.0.
[propagated-inputs]: Add r-rcpp.
2017-11-03 14:14:38 +01:00
840782204f
gnu: r-bbmle: Update to 1.0.20.
...
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.20.
2017-11-03 14:14:38 +01:00
1a1b4f0571
gnu: r-proxy: Update to 0.4-19.
...
* gnu/packages/cran.scm (r-proxy): Update to 0.4-19.
2017-11-03 14:14:38 +01:00
a8a2871f71
gnu: r-glue: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-glue): Update to 1.2.0.
2017-11-03 14:14:38 +01:00
a6ec5b7043
gnu: r-withr: Update to 2.1.0.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
2017-11-03 14:14:37 +01:00
fd9afcf4ea
gnu: r-quantreg: Update to 5.34.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
2017-11-03 14:14:37 +01:00
1fe75660c0
gnu: r-robustbase: Update to 0.92-8.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
2017-11-03 14:14:37 +01:00
1fb415cb50
gnu: r-purrr: Update to 0.2.4.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
2017-11-03 14:14:37 +01:00
c8818f5577
gnu: r-irlba: Update to 2.3.1.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
2017-11-03 14:14:37 +01:00
116e9837b5
gnu: r-checkmate: Update to 1.8.5.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
2017-11-03 14:14:36 +01:00
fde66e3018
gnu: r-multitaper: Update to 1.0-14.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
2017-11-03 14:14:36 +01:00
0a123e0609
gnu: r-data-table: Update to 1.10.4-3.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
2017-11-03 14:14:36 +01:00
b5a2f37157
gnu: r-pryr: Update to 0.1.3
...
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
2017-11-03 14:14:36 +01:00
bc409c8d3b
gnu: r-lazyeval: Update to 0.2.1.
...
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
2017-11-03 14:14:36 +01:00
6b968c4cd3
gnu: Add r-corrplot.
...
* gnu/packages/cran.scm (r-corrplot): New variable.
2017-11-03 10:34:24 +01:00
81e0b62502
gnu: Add r-ggrepel.
...
* gnu/packages/cran.scm (r-ggrepel): New variable.
2017-11-03 10:34:23 +01:00
0f3142e7c3
gnu: linux-libre: Update to 4.13.11.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.11.
(%linux-libre-hash): Update hash.
2017-11-03 01:31:06 -04:00
336b8d422d
gnu: linux-libre@4.9: Update to 4.9.60.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.60.
2017-11-03 01:30:25 -04:00
15d44dfe22
gnu: linux-libre@4.4: Update to 4.4.96.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.96.
2017-11-03 01:29:33 -04:00
72df48dbad
gnu: Add kodi-cli.
...
* gnu/packages/kodi.scm (kodi-cli): New variable.
2017-11-03 06:46:03 +03:00
1d84500a72
gnu: conda: Fix environment scripts.
...
* gnu/packages/package-management.scm (conda)[arguments]: Add phase
"undo-wrap".
2017-11-03 00:12:46 +01:00
ada53b1d50
Revert "gnu: itstool: Update to 2.0.4."
...
This reverts commit 13fbd174b5
2017-11-02 23:00:23 +01:00
77576be41f
gnu: openssl@1.1: Update to 1.1.0g [fixes CVE-2017-3735, CVE-2017-2736].
...
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0g.
[source]: Add HTTPS mirror.
2017-11-02 22:21:59 +01:00
1df4f5c919
gnu: openssl@1.0: Replace with 1.0.2m [fixes CVE-2017-3735, CVE-2017-2736].
...
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2m): New public variable.
2017-11-02 22:21:59 +01:00
22bf67d1f4
gnu: enlightenment: Update to 0.22.0.
...
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.0.
2017-11-02 23:05:11 +02:00
41b5408235
gnu: efl: Update to 1.20.5.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.5.
2017-11-02 23:05:09 +02:00
bc183968f5
gnu: vte-ng: Update to 0.50.2.a.
...
* gnu/packages/gnome.scm (vte-ng): Update to 0.50.2.a.
2017-11-02 21:17:41 +01:00
52995941bc
gnu: gnome-todo: Update to 3.26.2.
...
* gnu/packages/gnome.scm (gnome-todo): Update to 3.26.2.
2017-11-02 21:10:21 +01:00
92c9392767
gnu: dconf-editor: Update to 3.26.2.
...
* gnu/packages/gnome.scm (dconf-editor): Update to 3.26.2.
2017-11-02 21:10:21 +01:00
b39e612115
gnu: gnome-clocks: Update to 3.26.1.
...
* gnu/packages/gnome.scm (gnome-clocks): Update to 3.26.1.
2017-11-02 21:10:20 +01:00
1b59d45ee4
gnu: file-roller: Update to 3.26.2.
...
gnu/packages/gnome.scm (file-roller): Update to 3.26.2.
2017-11-02 21:10:20 +01:00
46994d0d4c
gnu: aisleriot: Update to 3.22.4.
...
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.4.
2017-11-02 21:10:19 +01:00
03e775d4e8
gnu: knot: Update to 2.6.1.
...
* gnu/packages/dns.scm (knot): Update to 2.6.1.
2017-11-02 21:10:18 +01:00
73b80ff924
gnu: miniupnpc: Update to 2.0.20171102.
...
* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20171102.
2017-11-02 21:10:18 +01:00
3440f12a7e
gnu: mpv: enable Wayland support.
...
* gnu/packages/video.scm (mpv)[inputs]: Add wayland and libxkbcommon.
2017-11-02 16:03:25 -04:00
13fbd174b5
gnu: itstool: Update to 2.0.4.
...
* gnu/packages/glib.scm (itstool): Update to 2.0.4.
[inputs]: Replace python and python-libxml2 with python-2 and python2-libxml2.
2017-11-02 15:37:22 -04:00
67bd376b1a
gnu: gnome-maps: Update to 3.26.2.
...
* gnu/packages/geo.scm (gnome-maps): Update to 3.26.2.
[arguments]: In 'install' phase, add webkitgtk to LD_LIBRARY_PATH.
2017-11-02 14:42:58 -04:00
4dd137d508
gnu: libgweather: Update to 3.26.0.
...
* gnu/packages/gnome.scm (libgweather): Update to 3.26.0.
2017-11-02 12:05:03 -04:00
bb27eb0dbf
gnu: Add java-plexus-classworlds.
...
* gnu/packages/java.scm (java-plexus-classworlds): New variable.
2017-11-02 13:07:38 +01:00
4d50897515
gnu: Add java-powermock-api-easymock.
...
* gnu/packages/java.scm (java-powermock-api-easymock): New variable.
2017-11-02 13:07:30 +01:00
33db168181
gnu: Add java-powermock-modules-junit4.
...
* gnu/packages/java.scm (java-powermock-modules-junit4): New variable.
2017-11-02 13:07:27 +01:00
6c21d46c70
gnu: Add java-powermock-modules-junit4-common.
...
* gnu/packages/java.scm (java-powermock-modules-junit4-common): New
variable.
2017-11-02 13:07:24 +01:00
2d5d65d7dd
gnu: Add java-powermock-api-support.
...
* gnu/packages/java.scm (java-powermock-api-support): New variable.
2017-11-02 13:07:22 +01:00
d4a4d5da60
gnu: Add java-powermock-core.
...
* gnu/packages/java.scm (java-powermock-core): New variable.
2017-11-02 13:07:19 +01:00
8d6a48150a
gnu: Add java-powermock-reflect.
...
* gnu/packages/java.scm (java-powermock-reflect): New variable.
* gnu/packages/patches/java-powermock-fix-java-files.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-11-02 13:07:17 +01:00
5619556b24
gnu: Add java-xerial-core.
...
* gnu/packages/java.scm (java-xerial-core): New variable.
2017-11-02 13:07:15 +01:00
a53d9ac0f2
gnu: Add java-lmax-disruptor.
...
* gnu/packages/java.scm (java-lmax-disruptor): New variable.
2017-11-02 13:07:12 +01:00
3120836732
gnu: Add java-bouncycastle-bcpkix.
...
* gnu/packages/java.scm (java-bouncycastle-bcpkix): New variable.
2017-11-02 13:07:09 +01:00
62315865df
gnu: Add java-bouncycastle-bcprov.
...
* gnu/packages/java.scm (java-bouncycastle-bcprov): New variable.
2017-11-02 13:07:07 +01:00
d54d7d31ac
gnu: Add java-lz4.
...
* gnu/packages/java.scm (java-lz4): New variable.
2017-11-02 13:07:04 +01:00
eaf3cb7a41
gnu: Add java-mvel2.
...
* gnu/packages/java.scm (java-mvel2): New variable.
2017-11-02 13:07:01 +01:00
1717a7de7b
gnu: Add java-jnacl.
...
* gnu/packages/java.scm (java-jnacl): New variable.
2017-11-02 13:06:59 +01:00
0442d897e9
gnu: Add java-testng.
...
* gnu/packages/java.scm (java-testng): New variable.
2017-11-02 13:06:56 +01:00
ca98e4481f
gnu: Add java-fest-assert.
...
* gnu/packages/java.scm (java-fest-assert): New variable.
2017-11-02 13:06:54 +01:00
3c6c835806
gnu: Add java-fest-test.
...
* gnu/packages/java.scm (java-fest-test): New variable.
2017-11-02 13:06:51 +01:00
7a343e971a
gnu: Add java-fest-util.
...
* gnu/packages/java.scm (java-fest-util): New variable.
2017-11-02 13:06:48 +01:00
e84b899d50
gnu: Add java-jmock-legacy.
...
* gnu/packages/java.scm (java-jmock-legacy): New variable.
2017-11-02 13:06:46 +01:00
25436c6d03
gnu: Add java-jmock-junit4.
...
* gnu/packages/java.scm (java-jmock-junit4): New variable.
2017-11-02 13:06:43 +01:00
045124ae2f
gnu: Add java-jmock.
...
* gnu/packages/java.scm (java-jmock): New variable.
2017-11-02 13:06:41 +01:00
11bc385b7b
gnu: Add java-bsh.
...
* gnu/packages/java.scm (java-bsh): New variable.
2017-11-02 13:06:38 +01:00
a6dd06d0e2
gnu: Add java-jcommander.
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* gnu/packages/java.scm (java-jcommander): New variable.
2017-11-02 13:06:19 +01:00
2524a2a17a
gnu: five-or-more: Update to 3.26.0.
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* gnu/packages/gnome.scm (five-or-more): Update to 3.26.0.
2017-11-02 07:36:58 -04:00
30ee6bf5d2
gnu: dejagnu: Update to 1.6.1.
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* gnu/packages/dejagnu.scm (dejagnu): Update to 1.6.1.
2017-11-02 13:12:15 +02:00
50e3f2a5a4
gnu: emacs-helm-make: Update to 0.1.0-1.21c1bfa.
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* gnu/packages/emacs.scm (emacs-helm-make): Update to 0.1.0-1.21c1bfa.
2017-11-02 11:05:46 +03:00
a254971350
gnu: units: Add readline input.
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* gnu/packages/maths.scm (units)[inputs]: Add readline.
2017-11-01 17:17:01 -05:00
0498d24866
gnu: units: Add python input.
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* gnu/packages/maths.scm (units)[inputs]: New field.
[arguments]: New field. Add 'wrap-units_cur phase.
2017-11-01 17:15:10 -05:00
f11d2849a1
gnu: units: Update to 2.16.
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* gnu/packages/maths.scm (units): Update to 2.16.
2017-11-01 17:11:15 -05:00
55ed15baba
gnu: gnome-mines: Update to 3.26.0.
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* gnu/packages/gnome.scm (gnome-mines): Update to 3.26.0.
2017-11-01 19:49:46 -04:00
88b35013b7
gnu: git: Update to 2.15.0.
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* gnu/packages/version-control.scm (git): Update to 2.15.0.
2017-11-01 21:26:58 +01:00
61e1d6a791
gnu: imagemagick: Update to 6.9.9-21.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-21.
[home-page]: Use HTTPS.
2017-11-01 21:26:50 +01:00
449ad88bb5
gnu: libass: Update to 0.14.0.
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* gnu/packages/video.scm (libass): Update to 0.14.0.
[native-inputs]: Change from YASM to NASM.
2017-11-01 20:29:32 +01:00
5d7141cd28
tests: ssh: Make sure we can run executables from PATH.
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* gnu/tests/ssh.scm (run-ssh-test): Add tests for running commands in system
and user profile.
2017-11-01 20:29:32 +01:00
2c16be569c
system: Return early in skeleton '.bashrc' when the shell is non-interactive.
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* gnu/system/shadow.scm (default-skeletons)[bashrc]: Add return statement.
2017-11-01 20:29:32 +01:00
0ab59dd8b8
system: Test for interactive shell instead of `cat` in skeleton '.bashrc'.
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* gnu/system/shadow.scm (default-skeletons)[bashrc]: Wrap $SSH_CLIENT test in
a conditional testing for interactive shell.
2017-11-01 20:29:32 +01:00
83a7a88f93
gnu: feh: Enable tests.
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* gnu/packages/image-viewers.scm (feh)[arguments]: Remove #:tests?. Add
#:test-target.
[native-inputs]: Add PERL and PERL-TEST-COMMAND. New field.
2017-11-01 20:29:32 +01:00
6b520156c2
gnu: Add perl-test-command.
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* gnu/packages/perl.scm (perl-test-command): New public variable.
2017-11-01 20:29:32 +01:00
5010d0e364
gnu: wine64: Add aarch64-linux to supported-systems.
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* gnu/packages/wine.scm (wine64)[supported-systems]: Add aarch64-linux.
2017-11-01 10:17:18 +02:00
03d6e9dd08
gnu: vsearch: Update to 2.5.2.
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* gnu/packages/bioinformatics.scm (vsearch): Update to 2.5.2.
2017-11-01 10:57:05 +10:00
e126b79736
gnu: diamond: Update to 0.9.11.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.11.
2017-11-01 10:57:03 +10:00
e6ee13599d
gnu: libfilezilla: Update to 0.11.1.
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* gnu/packages/ftp.scm (libfilezilla): Update to 0.11.1.
2017-11-01 01:02:04 +01:00
9b5db24e7a
gnu: gnome-mpv: Update to 0.13.
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* gnu/packages/video.scm (gnome-mpv): Update to 0.13.
2017-11-01 01:02:04 +01:00
78ab71ce1d
gnu: you-get: Update to 0.4.939.
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* gnu/packages/video.scm (you-get): Update to 0.4.939.
2017-11-01 01:02:03 +01:00
bc8bd40e6a
gnu: ncmpcpp: Update to 0.8.1.
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* gnu/packages/mpd.scm (ncmpcpp): Update to 0.8.1.
2017-10-31 18:13:53 -04:00
cd5c3979d1
gnu: Add emacs-ggtags.
...
* gnu/packages/emacs.scm (emacs-ggtags): New variable.
2017-10-31 20:08:00 +03:00
90bf26088e
gnu: Add sakura.
...
* gnu/packages/terminals.scm (sakura): New variable.
2017-10-31 09:41:52 -04:00
016590a951
gnu: Add emacs-company-quickhelp.
...
* gnu/packages/emacs.scm (emacs-company-quickhelp): New variable.
2017-10-31 14:55:18 +03:00
56295c5160
gnu: lxc: Update to 2.1.1.
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* gnu/packages/virtualization.scm (lxc): Update to 2.1.1.
2017-10-31 19:28:09 +08:00
2e4bb8c817
gnu: Add emacs-helm-make.
...
* gnu/packages/emacs.scm (emacs-helm-make): New variable.
2017-10-31 14:10:37 +03:00
7bf59f7021
gnu: Remove cufflinks.
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Cufflinks includes essential non-free code.
Fixes <https://bugs.gnu.org/28946 >.
* gnu/packages/bioinformatics.scm (cufflinks): Remove variable.
2017-10-31 08:17:06 +01:00
b275cd22d4
gnu: apr-util: Update to 1.6.1 [fixes CVE-2017-12618].
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* gnu/packages/apr.scm (apr): Update to 1.6.1.
2017-10-30 21:46:18 -04:00
b614c48017
gnu: apr: Update to 1.6.3 [fixes CVE-2017-12613].
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* gnu/packages/apr.scm (apr): Update to 1.6.3.
2017-10-30 21:46:18 -04:00
3022680aba
gnu: mpd: Update to 0.20.11.
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* gnu/packages/mpd.scm (mpd): Update to 0.20.11.
2017-10-30 21:46:14 -04:00
44b8823fc7
gnu: quagga: Update to 1.2.2 [fix CVE-2017-16227].
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* gnu/packages/networking.scm (quagga): Update to 1.2.2.
2017-10-30 20:42:13 -04:00
8b17ee4846
gnu: webkitgtk: Update to 2.18.2.
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* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.2.
2017-10-30 20:07:00 -04:00
c2eb8cd98c
gnu: xorg-server: Build reproducibly.
...
Fixes <https://bugs.gnu.org/24112 >.
* gnu/packages/xorg.scm (xorg-server)[arguments]: Pass "--with-os-name"
and "--with-os-vendor" as #:configure-flags.
Augment 'pre-configure' phase to set 'BUILD_DATE' and 'BUILD_TIME' in
'configure'.
2017-10-31 00:51:37 +01:00
8ff5b8aaa3
gnu: perl-http-cookies: Fix source uri.
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This is a follow-up to d284f01826
2017-10-30 19:49:37 +02:00
484a1c05d0
gnu: ola: Update to 0.10.5.
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* gnu/packages/lighting.scm (ola): Update to 0.10.5.
2017-10-30 17:20:43 +01:00
59261ebeea
gnu: ethtool: Update to 4.13.
...
* gnu/packages/networking.scm (ethtool): Update to 4.13.
2017-10-30 17:20:42 +01:00
2fb83ca6c5
gnu: perl-class-tiny: Update to 1.006.
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* gnu/packages/perl.scm (perl-class-tiny): Update to 1.006.
2017-10-30 17:20:42 +01:00
7e5132a297
gnu: perl-extutils-pkgconfig: Update to 1.16.
...
* gnu/packages/perl.scm (perl-extutils-pkgconfig): Update to 1.16.
2017-10-30 17:20:41 +01:00
72ef03b92b
gnu: perl-json-any: Update to 1.39.
...
* gnu/packages/perl.scm (perl-json-any): Update to 1.39.
2017-10-30 17:20:41 +01:00
caa7adacce
gnu: perl-sub-exporter-progressive: Update to 0.001013.
...
* gnu/packages/perl.scm (perl-sub-exporter-progressive): Update to 0.001013.
2017-10-30 17:20:41 +01:00
922814ae65
gnu: perl-html-lint: Update to 2.26.
...
* gnu/packages/perl.scm (perl-html-lint): Update to 2.26.
2017-10-30 17:20:40 +01:00
d284f01826
gnu: perl-http-cookies: Update to 6.04.
...
* gnu/packages/perl.scm (perl-http-cookies): Update to 6.04.
2017-10-30 17:20:40 +01:00
58ade30228
gnu: perl-xml-libxml: Update to 2.0132.
...
* gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0132.
2017-10-30 17:20:07 +01:00
faffd821f3
gnu: wine: Update to 2.0.3.
...
* gnu/packages/wine.scm (wine): Update to 2.0.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-10-30 10:42:20 -04:00
8fd4320033
gnu: ffmpeg: Configure with frei0r.
...
* gnu/packages/video.scm (ffmepg)[inputs]: Add 'frei0r-plugins'.
(arguments)[configure-flags]: Add '--enable-frei0r' and remove
'TODO' comment about frei0r.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-10-30 15:43:21 +02:00
49e1d76dd9
gnu: Add frei0r-plugins.
...
* gnu/packages/video.scm (frei0r-plugins): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-10-30 15:43:21 +02:00
1f6f4c40c1
gnu: Add r-tgconfig.
...
* gnu/packages/statistics.scm (r-tgconfig): New variable.
2017-10-30 12:07:53 +01:00
7941d1ed5d
gnu: Add r-tgstat.
...
* gnu/packages/statistics.scm (r-tgstat): New variable.
2017-10-30 12:07:51 +01:00
491dc2fb16
gnu: java: Fix libjvm.so linkage problem in icedtea-7.
...
* gnu/packages/java.scm (icedtea-7): Add phase to create a symbolic link to
libjvm.so.
2017-10-30 11:19:51 +01:00
91496dfc9a
tests: install: Estimate the installation system disk size.
...
1500 MiB are too small for a current system, thus let
system-disk-image estimate the required size.
* gnu/tests/install.scm: (run-install): Pass "#:disk-image-size
'guess" to system-disk-image.
2017-10-30 09:12:56 +01:00
73f71bc9b7
gnu: tig: Update to 2.3.0.
...
* gnu/packages/version-control.scm (tig): Update to 2.3.0.
[source]: Download from Github.
[home-page]: Update to new home-page.
2017-10-29 22:35:56 +02:00
0c6f4bec2e
gnu: Add newsboat.
...
* gnu/packages/syndication.scm (newsboat): New variable.
2017-10-29 22:02:44 +02:00
f7ddf99696
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
2017-10-29 15:29:18 -04:00
c9dc457711
gnu: mu: Add build phase to fix library reference.
...
* gnu/packages/mail.scm (mu)[arguments]: Add build phase "fix-ffi" to fix
reference to libguile-mu library.
2017-10-29 18:30:58 +01:00
d59ec12975
gnu: mu: Use Guile 2.2.
...
* gnu/packages/mail.scm (mu)[inputs]: Replace guile-2.0 with guile-2.2.
[arguments]: Replace references to version 2.0.
2017-10-29 18:30:58 +01:00
8de54944f7
gnu: offlineimap: Update to 7.1.4.
...
* gnu/packages/mail.scm (offlineimap): Update to 7.1.4.
2017-10-29 17:32:39 +01:00
8281f8263d
gnu: youtube-dl: Update to 2017.10.29.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.10.29.
2017-10-29 17:32:39 +01:00
be03120d78
gnu: perl-test-www-mechanize-psgi: Update to 0.37.
...
gnu/packages/web.scm (perl-test-www-mechanize-psgi): Update to 0.37.
2017-10-29 17:32:38 +01:00
303c68588a
gnu: perl-test-www-mechanize: Update to 1.48.
...
gnu/packages/web.scm (perl-test-www-mechanize): Update to 1.48.
2017-10-29 17:32:38 +01:00
c2d1b935e0
gnu: perl-uri-find: Update to 20160806.
...
* gnu/packages/web.scm (perl-uri-find): Update to 20160806.
2017-10-29 17:32:38 +01:00
4f50fd752b
gnu: perl-email-mime: Update to 1.946.
...
* gnu/packages/mail.scm (perl-email-mime): Update to 1.946.
[propagated-inputs]: Add perl-module-runtime.
2017-10-29 17:32:37 +01:00
9b5fc20c4e
gnu: perl-email-mime-contenttype: Update to 1.022.
...
* gnu/packages/mail.scm (perl-email-mime-contenttype): Update to 1.022.
2017-10-29 17:32:37 +01:00
25adc0066a
gnu: perl-email-simple: Update to 2.214.
...
* gnu/packages/mail.scm (perl-email-simple): Update to 2.214.
2017-10-29 17:32:36 +01:00
801eb74620
gnu: perl-email-sender: Update to 1.300031.
...
* gnu/packages/mail.scm (perl-email-sender): Update to 1.300031.
2017-10-29 17:32:36 +01:00
adce670797
gnu: perl-tie-cycle: Update to 1.225.
...
* gnu/packages/perl.scm (perl-tie-cycle): Update to 1.225.
2017-10-29 15:22:24 +01:00
ec4e2b24a7
gnu: perl-text-table: Update to 1.133.
...
* gnu/packages/perl.scm (perl-text-table): Update to 1.133.
2017-10-29 15:22:23 +01:00
c97dadcc97
gnu: perl-safe-isa: Update to 1.000008.
...
* gnu/packages/perl.scm (perl-safe-isa): Update to 1.000008.
2017-10-29 15:22:21 +01:00
384dec0889
gnu: perl-log-log4perl: Update to 1.49.
...
* gnu/packages/perl.scm (perl-log-log4perl): Update to 1.49.
2017-10-29 15:22:20 +01:00
dbbc8f5a86
gnu: perl-file-sharedir-dist: Update to 0.05.
...
* gnu/packages/perl.scm (perl-file-sharedir-dist): Update to 0.05.
2017-10-29 15:22:19 +01:00
37fcabf0ef
gnu: perl-business-ismn: Update to 1.131.
...
* gnu/packages/perl.scm (perl-business-ismn): Update to 1.131.
2017-10-29 15:22:17 +01:00
6a2c510dc5
gnu: perl-net-dns: Update to 1.13.
...
* gnu/packages/networking.scm (perl-net-dns): Update to 1.13.
2017-10-29 15:22:16 +01:00
11e5e932ad
gnu: conkeror: Update to 1.1.0.
...
* gnu/packages/conkeror.scm (conkeror): Update to 1.1.0.
2017-10-29 11:21:12 +01:00
53a3f5d792
gnu: giac-xcas: Update to 1.4.9-17.
...
* gnu/packages/algebra.scm (giac-xcas): Update to 1.4.9-17. Remove
unnecessary workaround about failing test.
2017-10-29 10:06:44 +01:00
4a8bd5500d
gnu: scribus: Update to 1.5.3. Add inputs.
...
* gnu/packages/scribus.scm (scribus): Update to 1.5.3.
[input]: Add fontconfig, harfbuzz, hunspell, icu4c, libcdr, libfreehand,
libmspub, librevenge, libvisio, openssl, podofo, poppler, and boost. Move
qttools to ...
[native-input]: ... here.
[home-page]: Fix URL.
Co-authored-by: Eric Bavier <bavier@member.fsf.org>
2017-10-29 09:09:56 +01:00
9de52b5643
gnu: perl-sys-cpu: Skip cpu_clock and cpu_type tests.
...
* gnu/packages/perl.scm (perl-sys-cpu)[source]: Replace test in snippet.
2017-10-28 18:20:58 -05:00
0f27666b91
gnu: linux-libre: Update to 4.13.10.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.10.
(%linux-libre-hash): Update hash.
2017-10-28 22:29:01 -04:00
88deca15b5
gnu: linux-libre@4.9: Update to 4.9.59.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.59.
2017-10-28 22:28:23 -04:00
813b4454a8
gnu: linux-libre@4.4: Update to 4.4.95.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.95.
2017-10-28 22:27:37 -04:00
c178aa344f
gnu: gavl: Fix building on armhf and aarch64.
...
* gnu/packages/video.scm (gavl)[arguments]: Add '-lm' to configure flags.
2017-10-28 23:11:12 +03:00
4b86f04a51
gnu: neomutt: Remove obsolete configure switches.
...
* gnu/packages/mail.scm (neomutt)[arguments]: Remove '--with-regex'
and '--with-external-dotlock' from configure-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:54:42 +02:00
32fc1ec3d5
gnu: neomutt: Do not inherit mutt.
...
* gnu/packages/mail.scm (neomutt): Remove (inherit mutt),
add 'build-system' and 'license'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:54:36 +02:00
7de23b02a1
gnu: neomutt: Update to 20171027.
...
* gnu/packages/mail.scm (neomutt): Update to 20171027.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:54:25 +02:00
bf1264ab70
gnu: emacs-yasnippet: Update to 0.12.2.
...
* gnu/packages/emacs.scm (emacs-yasnippet): Update to 0.12.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:31 +02:00
8a0d454eed
gnu: emacs-elfeed: Update to 2.2.0.
...
* gnu/packages/emacs.scm (emacs-elfeed): Update to 2.2.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:29 +02:00
9932dabfb6
gnu: emacs-hydra: Update to 0.14.0.
...
* gnu/packages/emacs.scm (emacs-hydra): Update to 0.14.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:25 +02:00
2b0ddaaac7
gnu: emacs-f: Update to 0.19.0.
...
* gnu/packages/emacs.scm (emacs-f): Update to 0.19.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:22 +02:00
4e4255849d
gnu: emacs-s: Update to 1.12.0.
...
* gnu/packages/emacs.scm (emacs-s): Update to 1.12.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 21:52:18 +02:00
c54a8fdf90
gnu: Update php to 7.1.11.
...
* gnu/packages/php.scm (php): Update to 7.1.11.
2017-10-28 14:19:15 +02:00
90ab26fa26
gnu: Add ocaml-utop.
...
* gnu/packages/ocaml.scm (ocaml-utop): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:33:59 +02:00
50856b7342
gnu: Add ocaml-findlib-1.7.3.
...
* gnu/packages/ocaml.scm (ocaml-findlib-1.7.3): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:33:46 +02:00
e88ff71c10
gnu: Add ocaml-lambda-term.
...
* gnu/packages/ocaml.scm (ocaml-zed): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:12:20 +02:00
cd4abd293d
gnu: Add ocaml-zed.
...
* gnu/packages/ocaml.scm (ocaml-zed): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:09:02 +02:00
c00233ac16
gnu: Add ocaml-jbuilder.
...
* gnu/packages/ocaml.scm (ocaml-jbuilder): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-28 10:00:09 +02:00
ed1f071e98
gnu: perl-net-dns: Update to 1.13.
...
* gnu/packages/networking.scm (perl-net-dns): Update to 1.13.
2017-10-28 01:55:26 +02:00
e13a63d933
gnu: perl-xml-libxml: Update to 2.0131.
...
* gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0131.
2017-10-28 01:55:26 +02:00
50942a690e
gnu: kicad: Build with ngspice support.
...
* gnu/packages/engineering.scm (kicad):
[arguments] <configure-flags>: Add KICAD_SPICE flag.
[inputs]: Add libngspice.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 13:03:39 -07:00
c48799c0a5
gnu: kicad: Update to commit 5f4599f.
...
* gnu/packages/engineering.scm (kicad): Update to commit 5f4599f.
[arguments]: Add "install-lib-3d" phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 13:03:18 -07:00
c16fabfa9e
gnu: kicad-library: Update to 4.0.6.
...
* gnu/packages/engineering.scm (kicad-library): Update to 4.0.6.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 13:00:39 -07:00
c31b61ef53
gnu: Add qucs.
...
* gnu/packages/engineering.scm (qucs): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 12:42:49 -07:00
40a99ca014
gnu: freehdl: Depend on the current 'gcc-toolchain'.
...
* gnu/packages/engineering.scm (freehdl)[inputs]: Change
'gcc-toolchain-5' to 'gcc-toolchain'.
2017-10-27 12:37:38 -07:00
b887ede17d
gnu: gcc: Add unversioned 'gcc-toolchain' variable.
...
Reported by Theodoros Foradis <theodoros@foradis.org>.
* gnu/packages/commencement.scm (gcc-toolchain): Rename to...
(make-gcc-toolchain): ... this.
(gcc-toolchain): New variable.
(gcc-toolchain-5): Turn into an alias for 'gcc-toolchain'.
2017-10-27 12:35:49 -07:00
99b9857be7
gnu: Add Catalan dictionary for Aspell.
...
Hola!
* gnu/packages/aspell.scm (aspell-dict-ca): New variable.
2017-10-27 11:57:47 -07:00
085bcca313
gnu: Add hunspell-dict-en*.
...
* gnu/packages/aspell.scm (aspell-word-list): New procedure.
(define-word-list-dictionary): New macro.
(hunspell-dict-en, hunspell-dict-en-au, hunspell-dict-en-ca)
(hunspell-dict-en-gb, hunspell-dict-en-gb-ize, hunspell-dict-en-us): New
variables.
2017-10-27 09:33:15 -07:00
d3f9589842
gnu: freehdl: Fix gvhdl and freehdl-gennodes scripts.
...
* gnu/packages/engineering.scm (freehdl):
[arguments] <phases>: Add patch-gvhdl and patch-freehdl-gennodes phases.
Wrap-program "/bin/gvhdl" in make-wrapper phase.
[inputs]: Add guile-2.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-27 09:33:15 -07:00
e37bdc0f28
gnu: Add gavl.
...
* gnu/packages/video.scm (gavl): New variable.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-10-27 08:25:55 -04:00
c50fe6c291
gnu: Add python-pycanberra.
...
* gnu/packages/libcanberra.scm (python-pycanberra): New variable.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-10-27 08:25:55 -04:00
635f981b9a
gnu: Add gst-transcoder.
...
* gnu/packages/video.scm (gst-transcoder): New variable.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-10-27 08:25:54 -04:00
58a308e0b4
gnu: Add gwl.
...
* gnu/packages/package-management.scm (gwl): New variable.
2017-10-27 11:17:43 +02:00
4119376d66
gnu: exiv2: Add upstream security fixes.
...
Fixes CVE-2017-14859, CVE-2017-14860, CVE-2017-14862 and CVE-2017-14864.
* gnu/packages/patches/exiv2-CVE-2017-14859-14862-14864.patch,
gnu/packages/patches/exiv2-CVE-2017-14860.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/image.scm (exiv2)[source]: Use them.
2017-10-27 00:50:09 +02:00
ba2cd6c2d8
gnu: synergy: Update repository URI and hash.
...
* gnu/packages/synergy.scm (synergy)[uri]: Replace synergy by synergy-core.
[sha256]: Update to reflect the name change of the archive root directory.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-26 15:45:14 -07:00
3414ce9876
gnu: snakemake: Update to 4.2.0.
...
* gnu/packages/python.scm (snakemake): Update to 4.2.0.
[propagated-inputs]: Add python-appdirs, python-configargparse, python-pyyaml,
and python-ratelimiter, which are dependencies as of Snakemake 4.1.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:42:06 +02:00
9d0866ce1b
gnu: Add python-ratelimiter.
...
* gnu/packages/python.scm (python-ratelimiter, python2-ratelimiter): New
variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:42:06 +02:00
b89e3c77c6
gnu: python-configargparse: Update to 0.12.0.
...
* gnu/packages/python.scm (python-configargparse, python2-configargparse):
Update to 0.12.0.
[arguments]: Enable tests.
[native-inputs]: Add python-pyyaml, which is an optional dependency but
required to run the tests.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:42:06 +02:00
750e9f15a3
gnu: xpra: Update to 2.1.3.
...
* gnu/packages/xorg.scm (xpra): Update to 2.1.3.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:42:06 +02:00
256ecba1a1
gnu: ansible: Update to 2.4.1.0.
...
* gnu/packages/admin.scm (ansible): Update to 2.4.1.0.
2017-10-27 00:30:49 +02:00
1c2adcd6b9
gnu: ffmpeg@3.3: Update to 3.3.5.
...
* gnu/packages/video.scm (ffmpeg-3.3): Update to 3.3.5.
2017-10-27 00:03:17 +02:00
b1c01503df
gnu: Add ffmpeg@3.3 and use it on packages that fail with 3.4.
...
* gnu/packages/gstreamer.scm (gst-libav)[inputs]: Change ffmpeg to ffmpeg-3.3.
* gnu/packages/messaging.scm (qtox)[inputs]: Change ffmpeg to ffmpeg-3.3.
* gnu/packages/video.scm (ffmpeg-3.3): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-10-27 00:01:53 +02:00
6b88912eb6
gnu: wget: Update to 1.19.2 [fixes CVE-2017-13089 and CVE-2017-13090].
...
* gnu/packages/wget.scm (wget): Update to 1.19.2.
[source](uri): Change to '.lz' tarball.
[source](patches): Remove.
[native-inputs]: Add LZIP.
* gnu/packages/patches/wget-CVE-2017-6508.patch,
gnu/packages/patches/wget-fix-504-test-timeout.patch,
gnu/packages/patches/wget-perl-5.26.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-10-26 23:45:17 +02:00
2e205c6193
gnu: openrct2: Fix a few paths.
...
* gnu/packages/games.scm (openrct2): Fix a few paths.
2017-10-26 20:07:50 +02:00
0cbcab7254
gnu: go: Update to 1.9.2.
...
* gnu/packages/golang.scm (go-1.9): Update to 1.9.2.
2017-10-26 12:14:33 -04:00
436594ca47
gnu: ffmpeg: Update to 3.4.
...
* gnu/packages/video.scm (ffmpeg): Update to 3.4.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-10-26 12:14:30 -04:00
bc709e0377
gnu: node: Update to 8.7.0.
...
* gnu/packages/node.scm (node): Update to 8.7.0.
(node)[arguments]: Removed dgram mutlicast test. Removed dns test. Removed
broken linter test workaround.
2017-10-26 12:57:43 +02:00
ed5e9a33f8
gnu: vsearch: Update to 2.5.1.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.5.1.
2017-10-26 19:55:29 +10:00
8ba3f751b6
gnu: r-nloptr: Update package hash.
...
The source was repacked and reuploaded without incrementing the version
number. The difference was windows line endings on the windows files.
* gnu/packages/statistics.scm (r-nloptr)[source]: Update package hash.
2017-10-26 10:46:02 +03:00
e5af1f4af3
gnu: sorcer: Fix building on non-Intel hardware.
...
* gnu/packages/music.scm (sorcer)[arguments]: Add phase to remove
architecture specific build flags.
2017-10-26 08:37:40 +03:00
b1e9837a3c
gnu: virt-manager: Enable persistent configuration support.
...
* gnu/packages/virtualization.scm (virt-manager)[inputs]: Add dconf.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:26:15 -07:00
f023685dca
gnu: virt-manager: Wrap with GSettings schema and GIO modules search paths.
...
Fixes a crash when opening the file chooser dialog.
* gnu/packages/virtualization.scm (virt-manager)[arguments]
<#:imported-modules>: Add (guix build glib-or-gtk-build-system).
<#:modules>: Import (guix build glib-or-gtk-build-system) as glib-or-gtk:.
<#:arguments>: Add 'glib-or-gtk-compile-schemas and 'glib-or-gtk-wrap.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:26:15 -07:00
60e9529729
gnu: Add python2-roca-detect.
...
* gnu/packages/crypto.scm (python2-roca-detect): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:26:15 -07:00
7756eab078
gnu: Add python2-pgpdump.
...
* gnu/packages/gnupg.scm (python2-pgpdump): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:25:57 -07:00
0046309398
gnu: Add python-coloredlogs.
...
* gnu/packages/python.scm (python-coloredlogs, python2-coloredlogs): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:25:20 -07:00
7d4147634b
gnu: Add python-verboselogs.
...
* gnu/packages/python.scm (python-verboselogs, python2-verboselogs): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:25:20 -07:00
2a81537f2f
gnu: Add python-capturer.
...
* gnu/packages/python.scm (python-capturer, python2-capturer): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:25:19 -07:00
92eb9a3535
gnu: Add python-humanfriendly.
...
* gnu/packages/python.scm (python-humanfriendly, python2-humanfriendly):
New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-25 22:25:19 -07:00
17650569d4
gnu: Fix Leo Famulari's copyright statement in (gnu packages calcurse).
...
* gnu/packages/calcurse.scm: Fix copyright statement.
2017-10-25 14:45:43 -04:00
a23dbbff14
gnu: calcurse: Used the "fixed" test-only tzdata for tests.
...
* gnu/packages/calcurse.scm (calcurse)[inputs]: Remove tzdata and add ...
[native-inputs]: tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
2017-10-25 14:44:38 -04:00
c4b542ffd4
gnu: parallel: Update to 20171022.
...
* gnu/packages/parallel.scm (parallel): Update to 20171022.
2017-10-25 21:37:53 +03:00
63bbf38fb1
gnu: expat: Update replacement to 2.2.4 [security fixes].
...
See 'Changes' in the source distribution for more information about the
fixed security issues.
* gnu/packages/xml.scm (expat)[replacement]: Update to 2.2.4.
(expat-2.2.2): Replace with...
(expat-2.2.4): ...new variable.
2017-10-25 19:06:37 +02:00
c61cac6902
gnu: tor: Update to 0.3.1.8.
...
* gnu/packages/tor.scm (tor): Update to 0.3.1.8.
2017-10-25 18:13:09 +02:00
65808ba4ec
gnu: sssd: Add missing word to description.
...
* gnu/packages/sssd.scm (sssd)[description]: Fix typo.
2017-10-25 18:13:08 +02:00
06c1304652
gnu: sssd: Update to 1.16.0.
...
* gnu/packages/sssd.scm (sssd): Update to 1.16.0.
2017-10-25 18:13:08 +02:00
3d96f2320a
gnu: ding-libs: Update to 0.6.1.
...
* gnu/packages/sssd.scm (ding-libs): Update to 0.6.1.
2017-10-25 18:13:08 +02:00
a6e67d867c
gnu: r-ff: Remove aarch64-linux from supported-systems.
...
* gnu/packages/cran.scm (r-ff)[supported-systems]: New field.
2017-10-25 19:07:11 +03:00
dda785f660
gnu: go@1.4: Limit supported systems.
...
* gnu/packages/golang.scm (go@1.4)[supported-systems]: New field,
Limit supported systems to x86_64-linux, i686-linux and armhf-linux.
(go@1.9)[supported-systems]: New field.
2017-10-25 19:07:10 +03:00
c633b911ce
gnu: perl-moox-file-configdir: Fix source URL.
...
* gnu/packages/perl.scm (perl-moox-file-configdir)[source]: Fix typo in source
URL.
2017-10-25 16:40:09 +02:00
4c77abc4da
gnu: Add r-forcats.
...
* gnu/packages/statistics.scm (r-forcats): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 16:24:03 +02:00
6a23c8b183
gnu: Add sqlite-with-fts3.
...
* gnu/packages/databases.scm (sqlite-with-fts3): New variable.
Co-authored-by: Pierre Langlois <pierre.langlois@gmx.com>
2017-10-25 15:13:38 +02:00
de98f4ed55
gnu: Add crypto++.
...
* gnu/packages/crypto.scm (crypto++): New variable.
* gnu/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 14:54:13 +02:00
60b7ed9cb8
gnu: Add libechonest.
...
* gnu/packages/music.scm (libechonest): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 14:54:13 +02:00
412d00728e
gnu: Add qjson.
...
* gnu/packages/web.scm (qjson): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 14:54:09 +02:00
15b0844257
gnu: Add parcimonie.
...
* gnu/packages/gnupg.scm (parcimonie): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:38 +02:00
985c41458d
gnu: Add perl-browser-open.
...
* gnu/packages/perl.scm (perl-browser-open): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:38 +02:00
65f7f60693
gnu: Add perl-b-keywords.
...
* gnu/packages/perl.scm (perl-b-keywords): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:38 +02:00
2a013d0f09
gnu: Add perl-carp-always.
...
* gnu/packages/perl.scm (perl-carp-always): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:38 +02:00
fc4083c54f
gnu: Add perl-net-dbus-glib.
...
* gnu/packages/glib.scm (perl-net-dbus-glib): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:38 +02:00
a372c4da2f
gnu: Add perl-net-dbus.
...
* gnu/packages/glib.scm (perl-net-dbus): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 10:49:37 +02:00
24404eaf93
gnu: dealii: Update to 8.5.1.
...
Fixes compilation with boost@1.64.0.
* gnu/packages/maths.scm (dealii): Update to 8.5.1.
2017-10-24 20:16:50 -05:00
4150da630f
gnu: p4est: Update to 2.0.
...
* gnu/packages/maths.scm (p4est): Update to 2.0.
2017-10-24 20:16:50 -05:00
9ce587f231
gnu: libhilbert: Remove package.
...
This package's source and webpage has disappeared for some time, and upstream
projects (e.g. libmesh) seem to be bundling it, so we remove it for now.
* gnu/packages/maths.scm (libhilbert): Remove variable.
2017-10-24 20:16:49 -05:00
958b5a1caa
gnu: slepc: Update to 3.8.0.
...
* gnu/packages/maths.scm (slepc): Update to 3.8.0.
2017-10-24 20:16:49 -05:00
6fec298d3e
gnu: petsc: Update to 3.8.0.
...
* gnu/packages/maths.scm (petsc): Update to 3.8.0
[native-inputs]: Remove perl, which is no longer needed.
2017-10-24 20:16:42 -05:00
6f141eff47
gnu: bwa: Update to 0.7.17.
...
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.17.
2017-10-25 09:29:22 +10:00
ae6e00f6f9
gnu: bwa: Change source URL to GitHub.
...
* gnu/packages/bioinformatics.scm (bwa)[source]: Change source URL to
GitHub.
2017-10-25 09:29:22 +10:00
85c991b029
gnu: Add perl-moox-options.
...
* gnu/packages/perl.scm (perl-moox-options): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:25 +02:00
68998abd4f
gnu: perl-getopt-long-descriptive: Update to 0.100.
...
* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.100.
[native-inputs]: Add perl-cpan-meta-check.
2017-10-24 23:30:24 +02:00
b936ddf312
gnu: Add perl-moox-configfromfile.
...
* gnu/packages/perl.scm (perl-moox-configfromfile): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:24 +02:00
8df39f572c
gnu: Add perl-moox-file-configdir.
...
* gnu/packages/perl.scm (perl-moox-file-configdir): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:24 +02:00
658a4976fa
gnu: Add perl-moox-cmd.
...
* gnu/packages/perl.scm (perl-moox-cmd): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:24 +02:00
b547ef1d09
gnu: perl-list-moreutils: Update to 0.426.
...
* gnu/packages/perl.scm (perl-list-moreutils): Update to 0.426.
[arguments]: Work around dotless @INC problem.
[native-inputs]: Add perl-test-leaktrace; remove perl-inc-latest and
perl-test-writevariants.
[propagated-inputs]: Add perl-list-moreutils-xs.
2017-10-24 23:30:24 +02:00
189bfb1112
gnu: Add perl-list-moreutils-xs.
...
* gnu/packages/perl.scm (perl-list-moreutils-xs): New variable.
2017-10-24 23:30:24 +02:00
544dc8d46b
gnu: Add perl-libintl-perl.
...
* gnu/packages/perl.scm (perl-libintl-perl): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
180411e3f4
gnu: Add perl-file-configdir.
...
* gnu/packages/perl.scm (perl-file-configdir): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
987232e67d
gnu: Add perl-data-record.
...
* gnu/packages/perl.scm (perl-data-record): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
8dca3bde0e
gnu: Add perl-data-printer.
...
* gnu/packages/perl.scm (perl-data-printer): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
857d75388b
gnu: Add perl-clone-pp.
...
* gnu/packages/perl.scm (perl-clone-pp): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
0de1e5e557
gnu: Add perl-data.
...
* gnu/packages/perl.scm (perl-data): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
6bf249211d
gnu: gnurl: Update to 7.56.1.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.56.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-10-24 17:19:15 -04:00
648c896ad3
gnu: screen: Update to 4.6.2.
...
* gnu/packages/screen.scm (screen): Update to 4.6.2.
2017-10-24 21:26:19 +03:00
ae7e24c421
gnu: mupdf: Fix CVE-2017-{14685,14686,14687}.
...
* gnu/packages/patches/mupdf-CVE-2017-14685.patch,
gnu/packages/patches/mupdf-CVE-2017-14686.patch,
gnu/packages/patches/mupdf-CVE-2017-14687.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
2017-10-24 13:44:34 -04:00
6dcc8239be
gnu: icu4c: Fix CVE-2017-14952.
...
* gnu/packages/patches/icu4c-CVE-2017-14952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c-fixed): New variable.
2017-10-24 13:10:35 -04:00
c330c27f7f
gnu: syncthing: Split into two outputs.
...
* gnu/packages/syncthing.scm (syncthing)[outputs]: New field.
[arguments]: Change the 'install' and 'install-docs' phases to install to the
two outputs.
2017-10-24 13:10:35 -04:00
1899ef0b83
gnu: syncthing: Use install-source? to disable installing the source code.
...
* gnu/packages/syncthing.scm (syncthing): Set #:install-source? #f
instead of deleting the install-source phase.
2017-10-24 13:10:35 -04:00
22473f6964
gnu: Add perl-types-path-tiny.
...
* gnu/packages/perl.scm (perl-types-path-tiny): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
35aaf4b1bd
gnu: Add perl-type-tiny-xs.
...
* gnu/packages/perl.scm (perl-type-tiny-xs): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
237edb6d1f
gnu: Add perl-test-taint.
...
* gnu/packages/perl.scm (perl-test-taint): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
cb2f48e7f2
gnu: Add perl-term-size-any.
...
* gnu/packages/perl.scm (perl-term-size-any): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
fcbc997e03
gnu: Add perl-term-size-perl.
...
* gnu/packages/perl.scm (perl-term-size-perl): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
a1798ee3c7
gnu: Add perl-devel-hide.
...
* gnu/packages/perl.scm (perl-devel-hide): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
8ae0558aad
gnu: Add perl-sort-naturally.
...
* gnu/packages/perl.scm (perl-sort-naturally): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
b6cd89084d
gnu: Add perl-proc-invokeeditor.
...
* gnu/packages/perl.scm (perl-proc-invokeeditor): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
b44ecca691
gnu: Add perl-archive-extract.
...
* gnu/packages/compression.scm (perl-archive-extract): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
5aeb661134
gnu: Add perl-gnupg-interface.
...
* gnu/packages/gnupg.scm (perl-gnupg-interface): New variable.
Co-authored-by: Petter <petter@mykolab.ch>
2017-10-24 18:38:31 +02:00
6ee4fd2ae1
gnu: borg: Split up the monolithic man page.
...
* gnu/packages/backup.scm (borg)[arguments]: Rewrite 'install-docs'
phase to install one man page per Borg sub-command.
2017-10-24 10:21:51 -04:00
db4411b42b
gnu: python-docutils: Update to 0.14.
...
* gnu/packages/python.scm (python-docutils, python2-docutils): Update to 0.14.
2017-10-24 10:21:51 -04:00
85f225fbf7
gnu: Add perl-xml-twig.
...
* gnu/packages/xml.scm (perl-xml-twig): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 10:40:49 +02:00
91f2daa58d
gnu: curl: Update replacement to 7.56.1 [fixes CVE-2017-1000257].
...
* gnu/packages/curl.scm (curl-7.56.0): Rename to ...
(curl-7.56.1): ... this. Update to 7.56.1.
(curl)[replacement]: Adjust accordingly.
2017-10-24 08:09:47 +02:00
fc9a93cbf9
gnu: claws-mail: Re-enable vcalendar.
...
* gnu/packages/mail.scm (claws-mail): Use module (gnu packages calendar).
[inputs]: Add libical.
2017-10-24 08:07:24 +02:00
62d48234e2
gnu: git: Update to 2.14.3.
...
* gnu/packages/version-control.scm (git): Update to 2.14.3.
2017-10-24 07:55:34 +02:00
306556528e
gnu: Add sorcer.
...
* gnu/packages/music.scm (sorcer): New variable.
2017-10-24 07:54:43 +02:00
2809a355b6
gnu: Add papagayo.
...
* gnu/packages/animation.scm (papagayo): New variable.
2017-10-24 07:54:43 +02:00
7a04dddd26
gnu: Add perl-html-tidy.
...
* gnu/packages/web.scm (perl-html-tidy): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:06:21 +02:00
0a9bdd9583
gnu: Add tidyp.
...
* gnu/packages/web.scm (tidyp): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:06:20 +02:00
efc8f7d03d
gnu: Add perl-lwp-online.
...
* gnu/packages/web.scm (perl-lwp-online): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:05:28 +02:00
9e88b210f6
gnu: Add perl-xml-handler-yawriter.
...
* gnu/packages/xml.scm (perl-xml-handler-yawriter): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:04:15 +02:00
33b592eed3
gnu: Add perl-xml-sax-writer.
...
* gnu/packages/xml.scm (perl-xml-sax-writer): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:04:15 +02:00
b7c5919514
gnu: Add perl-xml-filter-buffertext.
...
* gnu/packages/xml.scm (perl-xml-filter-buffertext): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:04:14 +02:00
9e1c358139
gnu: Add perl-tree-xpathengine.
...
* gnu/packages/xml.scm (perl-tree-xpathengine): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:04:14 +02:00
3b6958021d
gnu: Add perl-xml-xpathengine.
...
* gnu/packages/xml.scm (perl-xml-xpathengine): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:04:14 +02:00
6768e0a7a5
gnu: Add java-jboss-javassist.
...
* gnu/packages/java.scm (java-jboss-javassist): New variable.
2017-10-23 22:55:29 +02:00
b12fe1e517
gnu: Add java-assertj.
...
* gnu/packages/java.scm (java-assertj): New variable.
2017-10-23 22:55:25 +02:00
ec4e8ad724
gnu: Add java-guice-servlet.
...
* gnu/packages/java.scm (java-guice-servlet): New variable.
2017-10-23 22:55:21 +02:00
5766984b06
gnu: Add java-guice.
...
* gnu/packages/java.scm (java-guice): New variable.
2017-10-23 22:55:18 +02:00
454536e0ce
gnu: Add java-javax-inject.
...
* gnu/packages/java.scm (java-javax-inject): New variable.
2017-10-23 22:55:14 +02:00
5d104a2756
gnu: Add java-aopalliance.
...
* gnu/packages/java.scm (java-aopalliance): New variable.
2017-10-23 22:55:12 +02:00
213bb98180
gnu: Add java-eclipse-jetty-servlet-9.2.
...
* gnu/packages/web.scm (java-eclipse-jetty-servlet-9.2): New variable.
2017-10-23 22:55:09 +02:00
fb680f88e9
gnu: Add java-eclipse-jetty-servlet.
...
* gnu/packages/web.scm (java-eclipse-jetty-servlet): New variable.
2017-10-23 22:55:07 +02:00
fa2a23a146
gnu: Add java-eclipse-jetty-security-9.2.
...
* gnu/packages/web.scm (java-eclipse-jetty-security-9.2): New variable.
2017-10-23 22:55:04 +02:00
8528e20dff
gnu: Add java-eclipse-jetty-security.
...
* gnu/packages/web.scm (java-eclipse-jetty-security): New variable.
2017-10-23 22:55:02 +02:00
e36e2bee46
gnu: Add java-eclipse-jetty-server-9.2.
...
* gnu/packages/web.scm (java-eclipse-jetty-server-9.2): New variable.
2017-10-23 22:54:58 +02:00
5d38f7e4e8
gnu: Add java-eclipse-jetty-server.
...
* gnu/packages/web.scm (java-eclipse-jetty-server): New variable.
2017-10-23 22:54:56 +02:00
812c712f7a
gnu: Add java-eclipse-jetty-jmx-9.2.
...
* gnu/packages/web.scm (java-eclipse-jetty-jmx-9.2): New variable.
2017-10-23 22:54:52 +02:00
4b172061e5
gnu: Add java-eclipse-jetty-jmx.
...
* gnu/packages/web.scm (java-eclipse-jetty-jmx): New variable.
2017-10-23 22:54:49 +02:00
821869fcf4
gnu: Add java-eclipse-jetty-http-9.2.
...
* gnu/packages/web.scm (java-eclipse-jetty-http-9.2): New variable.
2017-10-23 22:54:47 +02:00
4a1376d3fd
gnu: Add java-eclipse-jetty-http.
...
* gnu/packages/web.scm (java-eclipse-jetty-http): New variable.
2017-10-23 22:54:45 +02:00
b90012fddf
gnu: Add java-eclipse-jetty-io-9.2.
...
* gnu/packages/web.scm (java-eclipse-jetty-io-9.2): New variable.
2017-10-23 22:54:42 +02:00
b510b7f58f
gnu: Add java-eclipse-jetty-io.
...
* gnu/packages/web.scm (java-eclipse-jetty-io): New variable.
2017-10-23 22:54:40 +02:00
5010671d4d
gnu: Add java-eclipse-jetty-util-9.2.
...
* gnu/packages/web.scm (java-eclipse-jetty-util-9.2): New variable.
2017-10-23 22:54:38 +02:00
1657d62ae5
gnu: Add java-eclipse-jetty-util.
...
* gnu/packages/web.scm (java-eclipse-jetty-util): New variable.
2017-10-23 22:54:35 +02:00
1f985e4497
gnu: Add java-eclipse-jetty-perf-helper.
...
* gnu/packages/web.scm (java-eclipse-jetty-perf-helper): New variable.
2017-10-23 22:54:33 +02:00
339bef37cd
gnu: Add java-eclipse-jetty-test-helper.
...
* gnu/packages/web.scm (java-eclipse-jetty-test-helper): New variable.
2017-10-23 22:54:30 +02:00
91072287a6
gnu: Add java-tomcat.
...
* gnu/packages/web.scm (java-tomcat): New variable.
2017-10-23 22:54:27 +02:00
90a127c7ed
gnu: Add java-hdrhistogram.
...
* gnu/packages/web.scm (java-hdrhistogram): New variable.
2017-10-23 22:54:12 +02:00
1a6497dee4
gnu: Add python2-libmpsse.
...
* gnu/packages/embedded.scm: Add imports.
(python2-libmpsse): New variable.
2017-10-23 19:11:19 +02:00
cc14a90fd3
gnu: borg: Update to 1.1.1.
...
* gnu/packages/backup.scm (borg): Update to 1.1.1.
2017-10-23 14:49:32 +02:00
57af0d13b2
gnu: python-lmdb: Update to 0.93.
...
* gnu/packages/databases.scm (python-lmdb): Update to 0.93.
2017-10-23 14:49:32 +02:00
afd845368a
gnu: python-peewee: Update to 2.10.2.
...
* gnu/packages/databases.scm (python-peewee): Update to 2.10.2.
2017-10-23 14:49:31 +02:00
6a4ad78dd6
gnu: python-graphviz: Update to 0.8.1.
...
* gnu/packages/graphviz.scm (python-graphviz): Update to 0.8.1.
2017-10-23 14:49:31 +02:00
2b1b27990b
gnu: python-graphene: Disable tests.
...
* gnu/packages/python.scm (python-graphene)[native-inputs]: Remove.
[arguments]: Disable #:tests.
2017-10-23 14:49:30 +02:00
f737d9f2fb
gnu: python-pytest-django: Use python-pytest@3.
...
* gnu/packages/django.scm (python-pytest-django)[propagated-inputs]: Replace
python-pytest with python-pytest-3.0.
2017-10-23 14:49:30 +02:00
ce4dfde0d8
gnu: miso: Update to 0.5.4.
...
* gnu/packages/bioinformatics.scm (miso): Update to 0.5.4.
2017-10-23 14:49:29 +02:00
1ee3079d78
gnu: cowsay: Run tests after install.
...
* gnu/packages/games.scm (cowsay)[arguments]: Delete 'check phase, add
custom 'check phase after install.
2017-10-23 11:44:17 +03:00
3bf94bc8bc
gnu: criu: Add missing perl input.
...
* gnu/packages/virtualization.scm (criu)[native-inputs]: Add perl.
2017-10-23 09:50:33 +03:00
fe420383e1
gnu: Add criu.
...
* gnu/packages/virtualization.scm (criu): New variable.
2017-10-23 08:09:05 +02:00
de5308f526
gnu: Add libnet.
...
* gnu/packages/networking.scm (libnet): New variable.
2017-10-23 08:09:05 +02:00
d298c815e6
gexp: Add 'directory-union'.
...
* gnu/services.scm (directory-union): Move to...
* guix/gexp.scm (directory-union): ... here. New procedure.
* doc/guix.texi (G-Expressions): Document it.
2017-10-22 22:09:00 -07:00
dedb512f8f
gexp: Add 'file-union'.
...
* gnu/services.scm (file-union): Move to...
* guix/gexp.scm (file-union): ... here. New procedure.
* doc/guix.texi (G-Expressions): Document it.
2017-10-22 22:09:00 -07:00
6e644cfdb3
services: base: Add file->udev-rule function.
...
This function allows passing a file-like object to the udev service.
* gnu/services/base.scm (file->udev-rule): New function.
* doc/guix.texi (Base Services): Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 22:09:00 -07:00
2f05dd6b4c
gnu: linux-libre: Update to 4.13.9.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.9.
(%linux-libre-hash): Update hash.
2017-10-23 00:53:38 -04:00
1b635cafac
gnu: linux-libre@4.9: Update to 4.9.58.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.58.
2017-10-23 00:53:03 -04:00
8e4a976c68
gnu: linux-libre@4.4: Update to 4.4.94.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.94.
2017-10-23 00:52:28 -04:00
bb234ed825
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
2017-10-23 00:51:34 -04:00
fc938a2775
gnu: lxqt-common: Remove.
...
This package is marked as deprecated upstream.
Fixes <https://bugs.gnu.org/28823 >.
* gnu/packages/lxqt.scm (lxqt-common): Remove.
2017-10-22 16:05:26 -07:00
ed9b09e4f0
gnu: impressive: Fix Python 2/3 dependency mismatch.
...
* gnu/packages/pdf.scm (impressive)[inputs]: Depend on PYTHON2-PYGAME.
2017-10-22 15:32:19 -07:00
3a784700cd
gnu: Add ghc-aws.
...
* gnu/packages/haskell.scm (ghc-aws): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:19 -07:00
95fb25bf59
gnu: Add ghc-conduit-combinators.
...
* gnu/packages/haskell.scm (ghc-condui-combinators): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
463c39c339
gnu: ghc-conduit: Fix lint error.
...
* gnu/packages/haskell.scm (ghc-conduit)[description]: Fix lint error.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
7bc18f412b
gnu: ghc-conduit: Update to 1.2.12.1.
...
* gnu/packages/haskell.scm (ghc-conduit): Update to 1.2.12.1.
[native-inputs]: Add "ghc-split".
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
ed4cc0c5e9
gnu: Add ghc-mono-traversable.
...
* gnu/packages/haskell.scm (ghc-mono-traversable): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
f6094850d0
gnu: Add ghc-foldl.
...
* gnu/packages/haskell.scm (ghc-foldl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
1896a2526d
gnu: Add ghc-vector-builder.
...
* gnu/packages/haskell.scm (ghc-vector-builder): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
33109c822a
gnu: Add ghc-rebase.
...
* gnu/packages/haskell.scm (ghc-rebase): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:18 -07:00
24535a3d00
gnu: Add ghc-uuid.
...
* gnu/packages/haskell.scm (ghc-uuid): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
b999b0092e
gnu: Add ghc-uuid-types.
...
* gnu/packages/haskell.scm (ghc-uuid-types): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
6eda263586
gnu: Add ghc-network-info.
...
* gnu/packages/haskell.scm (ghc-network-info): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
0119f17f5d
gnu: Add ghc-cryptohash-sha1.
...
* gnu/packages/haskell.scm (ghc-cryptohash-sha1): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
caac21006d
gnu: Add ghc-cryptohash-md5.
...
* gnu/packages/haskell.scm (ghc-cryptohash-md5): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
8155778f52
gnu: Add ghc-puremd5
...
* gnu/packages/haskell.scm (ghc-puremd5): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
f78ed5d56f
gnu: Add ghc-pretty-hex.
...
* gnu/packages/haskell.scm (ghc-pretty-hex): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:17 -07:00
83c79ea0f8
gnu: Add ghc-crypto-api-tests.
...
* gnu/packages/haskell.scm (ghc-crypto-api-tests): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
e2f6116e78
gnu: Add ghc-crypto-api.
...
* gnu/packages/haskell.scm (ghc-crypto-api): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
933e78045d
gnu: Add ghc-entropy.
...
* gnu/packages/haskell.scm (ghc-entropy): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
16d4125e90
gnu: Add ghc-either.
...
* gnu/packages/haskell.scm (ghc-either): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
87129984ca
gnu: Add ghc-monadrandom.
...
* gnu/packages/haskell.scm (ghc-monadrandom): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
4562c8c894
gnu: Add ghc-contravariant-extras.
...
* gnu/packages/haskell.scm (ghc-contravariant-extras): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
e329bacb85
gnu: Add ghc-tuple-th.
...
* gnu/packages/haskell.scm (ghc-tuple-th): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
ac4cb8fd7a
gnu: Add ghc-base-prelude.
...
* gnu/packages/haskell.scm (ghc-base-prelude): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:16 -07:00
371ad40c84
gnu: Add ghc-chunked-data.
...
* gnu/packages/haskell.scm (ghc-chunked-data): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
0c7172848e
gnu: Add ghc-statistics.
...
* gnu/packages/haskell.scm (ghc-statistics): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
8184b0f98c
gnu: ghc-base-orphans: Update to 0.6.
...
* gnu/packages/haskell.scm (ghc-base-orphans): Update to 0.6.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
608bf276d7
gnu: Add ghc-monad-par.
...
* gnu/packages/haskell.scm (ghc-monad-par): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
f978e2ac20
gnu: Add ghc-abstract-deque.
...
* gnu/packages/haskell.scm (ghc-abstract-deque): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
59551881b1
gnu: Add ghc-monad-par-extras.
...
* gnu/packages/haskell.scm (ghc-monad-par-extras): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
97b26920a8
gnu: Add ghc-abstract-par.
...
* gnu/packages/haskell.scm (ghc-abstract-par): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:15 -07:00
e0195ea875
gnu: Add ghc-test-framework-th.
...
* gnu/packages/haskell.scm (ghc-test-framework-th): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
897d4f2820
gnu: Add ghc-language-haskell-extract.
...
* gnu/packages/haskell.scm
(ghc-language-haskell-extract): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
30aede1b6f
gnu: Add ghc-vector-algorithms.
...
* gnu/packages/haskell.scm (ghc-vector-algorithms): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
1a2a247bce
gnu: Add ghc-mwc-random.
...
* gnu/packages/haskell.scm (ghc-mwc-random): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
a51ba89774
gnu: Add ghc-math-functions.
...
* gnu/packages/haskell.scm (ghc-math-functions): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
bdd7e3950f
gnu: Add ghc-erf.
...
* gnu/packages/haskell.scm (ghc-erf): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
c1274a0b79
gnu: Add ghc-vector-th-unbox.
...
* gnu/packages/haskell.scm (ghc-vector-th-unbox): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:14 -07:00
78d8b8f36a
gnu: Add ghc-errors.
...
* gnu/packages/haskell.scm (ghc-errors): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-22 15:32:13 -07:00
ef7dd2e259
gnu: python-chardet: Fix PyPi download location.
...
This is a followup to a54cb3ce1f
2017-10-22 23:32:17 +02:00
60e29339d8
gnu: glibc: Fix CVE-2017-15670, CVE-2017-15671.
...
* gnu/packages/patches/glibc-CVE-2017-15670-15671.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc/fixed): New variable.
(glibc-2.24, glibc-2.23, glibc-2.22)[source](patches): Add
'glibc-CVE-2017-15670-15671.patch'.
2017-10-22 23:13:09 +02:00
65fc5bf07d
gnu: faust-2: Update to 2.1.0.
...
* gnu/packages/audio.scm (faust-2): Update to 2.1.0.
[source]: Fetch sources via git.
[arguments]: Add phase "fix-permissions".
2017-10-22 21:25:28 +02:00
25669275a1
gnu: irssi: Update to 1.0.5 [security fixes].
...
Fixes CVE-2017-15228, CVE-2017-15227, CVE-2017-15721, CVE-2017-15723 and
CVE-2017-15722. See <https://irssi.org/security/irssi_sa_2017_10.txt >.
* gnu/packages/irc.scm (irssi): Update to 1.0.5.
2017-10-22 17:24:33 +02:00
a54cb3ce1f
gnu: python-chardet: Update to 3.0.4.
...
* gnu/packages/python.scm (python-chardet, python2-chardet): Update to 3.0.4.
2017-10-22 17:13:19 +02:00
69f7f04544
gnu: python2-hypothesis: fix propagated inputs.
...
* gnu/packages/python.scm (python2-hypothesis)[propagated-inputs]: Add
python2-enum34, which was incorrectly listed among the native inputs.
2017-10-22 17:13:15 +02:00
7f7fadb592
gnu: keepassxc: Update to 2.2.1.
...
* gnu/packages/password-utils.scm (keepassxc): Update to 2.2.1.
2017-10-22 16:55:36 +02:00
b000294ef7
gnu: qt: Set 'EffectiveSourcePaths' to 'qtbase' for submodules.
...
Fixes a regression introduced in 8075b62378
2017-10-22 19:37:35 +08:00
3e8daecfd8
gnu: vim: Update to 8.0.1207.
...
* gnu/packages/vim.scm (vim): Update to 8.0.1207.
2017-10-22 13:22:59 +02:00
d436c6b566
gnu: rottlog: Remove hard-coded '/usr/sbin/sendmail' reference.
...
* gnu/packages/admin.scm (rottlog)[arguments]: Add 'patch-paths' phase.
2017-10-22 13:22:59 +02:00
58f0a19c58
gnu: sddm: Fix FTBFS after Qt paths change.
...
* gnu/packages/display-managers.scm (sddm)[arguments]: Add 'fix-qml-include'
phase.
2017-10-22 13:22:59 +02:00
03639d0354
gnu: Add python-editdistance.
...
* gnu/packages/textutils.scm (python-editdistance): New variable.
2017-10-22 13:19:58 +02:00
12a9f7be54
gnu: kservice: Fix comment (number of failing tests).
...
* gnu/packages/kde-frameweorks.scm(kservice): Fix comment.
2017-10-22 12:58:42 +02:00
a00403c61c
gnu: suil: Update to 0.10.0.
...
* gnu/packages/audio.scm (suil): Update to 0.10.0.
[inputs]: Add gtk+.
[description]: Remove version numbers from supported toolkits.
2017-10-22 12:13:37 +02:00
197484147a
gnu: ingen: Update to 0.0.0-2.cc4a4db33.
...
* gnu/packages/music.scm (ingen): Update to 0.0.0-2.cc4a4db33.
[inputs]: Replace lv2 with lv2-devel.
2017-10-22 12:13:37 +02:00
5e30032ffb
gnu: Add lv2-devel.
...
* gnu/packages/audio.scm (lv2-devel): New variable.
2017-10-22 12:13:37 +02:00
ab8f4a7067
gnu: ganv-devel: Update to 1.5.4-12f7d6b04.
...
* gnu/packages/gtk.scm (ganv-devel): Update to 1.5.4-12f7d6b04.
2017-10-22 12:13:36 +02:00
a8bf6b9b9b
gnu: raul-devel: Update to 0.8.9-4db870b2b.
...
* gnu/packages/audio.scm (raul-devel): Update to 0.8.9-4db870b2b.
2017-10-22 12:13:36 +02:00
e206de67b6
gnu: Add r-rgraphviz.
...
* gnu/packages/graph.scm (r-rgraphviz): New variable.
2017-10-22 12:12:42 +02:00
1ab867bebb
gnu: Add r-pdist.
...
* gnu/packages/cran.scm (r-pdist): New variable.
2017-10-22 12:10:33 +02:00
6efc999678
gnu: Update coq-interval to 3.3.0.
...
* gnu/packages/ocaml.scm (coq-interval): Update to 3.3.0.
[inputs]: Add coq-bignums.
2017-10-22 10:21:25 +02:00
dbfb1a596a
gnu: Add coq-bignums.
...
* gnu/packages/ocaml.scm (coq-bignums): New variable.
2017-10-22 10:21:22 +02:00
3ffd180cc5
gnu: Update coq-coquelicot to 3.0.1.
...
* gnu/packages/ocaml.scm (coq-coquelicot): Update to 3.0.1.
2017-10-22 10:21:19 +02:00
2e331c9c43
gnu: Update coq-mathcomp to 1.6.2.
...
* gnu/packages/ocaml.scm (coq-mathcomp): Update to 1..6.2.
2017-10-22 10:21:16 +02:00
b44f13e04c
gnu: Update coq-flocq to 2.6.0.
...
* gnu/packages/ocaml.scm (coq-flocq): Update to 2.6.0.
2017-10-22 10:21:14 +02:00
6e4da73710
gnu: Update coq to 8.7.0.
...
* gnu/packages/ocaml.scm (coq): Update to 8.7.0.
[build-system]: Use ocaml-build-system.
[inputs]: Add python-2.
[arguments]: Disable two failing tests.
2017-10-22 10:21:11 +02:00
07b4cd3a48
gnu: camlp5: install META file.
...
* gnu/packages/ocaml.scm (camlp5) [phases]: New install-meta phase.
2017-10-22 10:20:50 +02:00
3d679ab1e5
gnu: lame: Update to 3.100.
...
* gnu/packages/mp3.scm (lame): Update to 3.100.
[source]: Don't hard-code version.
2017-10-22 00:39:26 +02:00
28d0b52164
gnu: python-pyqt: Update to 5.9.
...
* gnu/packages/qt.scm (python-pyqt): Update to 5.9.
2017-10-21 22:38:55 +02:00
079e679219
gnu: python-sip: Update to 4.19.3.
...
* gnu/packages/qt.scm (python-sip): Update to 4.19.3.
2017-10-21 22:38:55 +02:00
a4194d1684
gnu: rest: Update to 0.8.1.
...
* gnu/packages/gnome.scm (rest): Update to 0.8.1.
2017-10-21 17:43:46 +02:00
4b9a65bf6e
gnu: gnome-disk-utility: Update to 3.26.1.
...
* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.26.1.
[build-system]: Use meson-build-system.
[native-inputs]: Add gtk+:bin.
2017-10-21 17:43:46 +02:00
b27991179e
gnu: perl-geo-ip: Update to 1.51.
...
* gnu/packages/networking.scm (perl-geo-ip): Update to 1.51.
2017-10-21 17:43:46 +02:00
5713bbf157
Use HTTPS for bioconductor.org.
...
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
82bdcfe821
gnu: schismtracker: Update to 20170910.
...
* gnu/packages/music.scm (schismtracker): Update to 20170910.
2017-10-21 09:44:28 -04:00
fd75eb6cd4
gnu: Fix the hashes of mutated GitHub archives.
...
Fixes <https://bugs.gnu.org/28745 >.
* gnu/packages/audio.scm (csound): Fix hash.
* gnu/packages/engineering.scm (fritzing): Likewise.
* gnu/packages/erlang.scm (erlang): Likewise.
* gnu/packages/fonts.scm (font-google-material-design-icons): Likewise.
* gnu/packages/graphics.scm (ogre): Likewise.
* gnu/packages/java.scm (java-plexus-interpolation, antlr3): Likewise.
* gnu/packages/serialization.scm (yaml-cpp): Likewise.
* gnu/packages/version-control.scm (libgit2): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-20 22:55:51 +02:00
7827032a7c
gnu: libvirt: Fix CVE-2017-1000256.
...
* gnu/packages/patches/libvirt-CVE-2017-1000256.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (libvirt)[source]: Use it.
2017-10-20 15:36:43 -04:00
48f8b07082
gnu: mysql: Update to 5.7.20.
...
* gnu/packages/databases.scm (mysql): Update to 5.7.20.
2017-10-20 15:36:42 -04:00
3890df5800
gnu: webkitgtk: Update to 2.18.1.
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* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.1.
2017-10-20 15:36:39 -04:00
a6e70e1169
gnu: youtube-dl: Update to 2017.10.20.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.10.20.
2017-10-20 19:48:34 +02:00
5a740d06b6
gnu: dovecot: Update to 2.2.33.2.
...
* gnu/packages/mail.scm (dovecot): Update to 2.2.33.2.
2017-10-20 19:48:34 +02:00
fa9ac83ec4
gnu: ola: Build with protobuf@2.
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This follows up commit dd12d4aad0
2017-10-20 19:48:33 +02:00
77aa706ab6
gnu: font-hack: Update to 3.000.
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* gnu/packages/fonts.scm (font-hack): Update to 3.000.
[source]: Download from new account.
[license]: Explicitly list all licences.
2017-10-20 19:48:33 +02:00
Ludovic Courtès