ed2dfe3955
gnu: Add snakemake-4.
...
* gnu/packages/python.scm (snakemake-4): New variable.
* gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq,
pigx-chipseq)[inputs]: Use it.
2018-07-27 15:30:38 +02:00
269f100330
gnu: snakemake: Add missing dependencies.
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* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie,
python-docutils, python-jinja2, python-jsonschema, and python-networkx.
2018-07-27 15:30:38 +02:00
216a72a957
gnu: Add python-datrie.
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* gnu/packages/python.scm (python-datrie): New variable.
2018-07-27 15:30:38 +02:00
beb8511c73
gnu: imagemagick: Update to 6.9.10-8.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-8.
2018-07-27 14:43:43 +02:00
2fcbc572f9
gnu: mbedtls-apache: Update to 2.7.5.
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* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.5.
2018-07-27 14:43:43 +02:00
b62715aa82
gnu: snakemake: Update to 5.2.0.
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* gnu/packages/python.scm (snakemake): Update to 5.2.0.
2018-07-27 14:19:43 +02:00
22305f859b
gnu: guile-sdl2: Update to 0.3.0.
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* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.0.
[arguments]: Remove "patch-makefile" phase.
2018-07-27 14:19:33 +02:00
d804d0b9ef
import: hackage: Emit native-inputs in the importer.
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* guix/import/cabal.scm (cabal-custom-setup-dependencies): Export.
(cabal-package-custom-setup): Export.
(<cabal-package>): New field "custom-setup".
(make-cabal-package): Modify.
(eval-cabal): Modify.
* guix/import/hackage.scm (cabal-dependencies->names): Factor out...
(cabal-test-dependencies->names): ...this.
(cabal-custom-setup-dependencies->names): New procedure.
(hackage-module->sexp): Modify.
2018-07-27 11:42:53 +02:00
9dafb64711
gnu: tiled: Update to 1.1.6.
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* gnu/packages/game-development.scm (tiled): Update to 1.1.6.
[arguments]: Substitute invoke for system*.
2018-07-27 00:17:06 -04:00
6e92fba4b0
gnu: python-xsge: Update to 2018.02.26.
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* gnu/packages/game-development.scm (python-xsge, python2-xsge): Update to
2018.02.26.
[arguments]: Substitute invoke for system*.
2018-07-26 23:35:45 -04:00
d36b98ad95
gnu: freeciv: Update to 2.6.0.
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* gnu/packages/games.scm (freeciv): Update to 2.6.0.
2018-07-26 14:43:10 -04:00
e8ec2dda08
gnu: ecryptfs-utils: Patch more hardcoded paths.
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* gnu/packages/linux.scm (ecryptfs-utils): [arguments]: Add an additional file
to be patched that was missing in the last fix. Ecryptfs will now find the
umount binary path as well as mount and others. Re-sort the list of files to be
substituted.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-07-26 13:19:57 -04:00
92526ade57
gnu: cabextract: Delete bundled libmspack.
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* gnu/packages/compression.scm (cabextract)[source](modules, snippet): New field.
2018-07-26 17:30:18 +02:00
e0a98e7bd5
gnu: cabextract: Update to 1.7.
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* gnu/packages/compression.scm (cabextract): Update to 1.7.
2018-07-26 17:28:35 +02:00
4bda2274a5
gnu: fuse: Update source hash.
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The fuse 2.9.8 tarball and signature was modified in place. Both are signed
by the same key, at different dates, and the only differences are directory
timestamps and a ChangeLog update.
* gnu/packages/linux.scm (fuse)[source](sha256): Update.
2018-07-26 17:17:45 +02:00
a9446dde2b
gnu: make-u-boot-package: Don't install "sunxi-spl-with-ecc.bin".
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* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]<#:phases>
[install]: Don't install "sunxi-spl-with-ecc.bin".
2018-07-26 15:54:52 +02:00
d38755cb91
gnu: Add ruby-net-scp.
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* gnu/packages/ruby.scm (ruby-net-scp): New variable.
2018-07-26 15:54:52 +02:00
714b49f68d
gnu: translate-shell: Fix .el install directory.
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* gnu/packages/dictionaries.scm (translate-shell)[arguments]: Change the
install directory during the custom 'emacs-install phase to match with
other emacs .el packages.
2018-07-26 16:14:11 +03:00
963157f1cc
gnu: mariadb: Delete test files and static libraries.
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* gnu/packages/databases.scm (mariadb)[arguments]: Adapt 'post-install' phase
to purge static archives and test executables.
2018-07-26 14:38:03 +02:00
2001d2dac4
gnu: mariadb: Remove some bundled libraries.
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* gnu/packages/databases.scm (mariadb)[source](snippet, modules): New fields.
[arguments]: Add explicit #:configure-flags for system libraries. Add
'unbundle' phase. Remove 'pre-configure' phase.
[inputs]: Add SNAPPY and XZ.
2018-07-26 14:38:03 +02:00
03aed90b86
gnu: mariadb: Update to 10.1.34.
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* gnu/packages/databases.scm (mariadb): Update to 10.1.34.
2018-07-26 14:38:02 +02:00
3869f39e6d
gnu: mariadb: Run the full test suite.
...
* gnu/packages/databases.scm (mariadb)[arguments]: Override 'check' phase.
Add phase 'adjust-tests'. Disable one more plugin.
[properties]: New field.
2018-07-26 14:38:02 +02:00
5b4d2e40f1
gnu: mariadb: Disable plugin that fails on armhf.
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* gnu/packages/databases.scm (mariadb)[arguments]: Add 'disable-plugins' phase.
2018-07-26 14:38:02 +02:00
4c27ea06d4
gnu: mariadb: Install pkg-config file to a standard location.
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* gnu/packages/databases.scm (mariadb)[#:configure-flags]: Set
INSTALL_SHAREDIR to "share".
2018-07-26 14:37:29 +02:00
d60772dcdd
gnu: java-picard: Fix manifest.
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* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Adjust phase
'edit-classpath-in-manifest for the new manifest generation code.
2018-07-26 12:46:50 +02:00
bca72b39c7
gnu: python-qsintilla: Fix building.
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* gnu/packages/qt.scm (python-qscintilla)[arguments]: Extend custom
'configure phase to also patch the 'installed.txt' file.
2018-07-26 13:21:05 +03:00
54e543b626
gnu: linux-libre: Update to 4.17.10.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.10.
(%linux-libre-hash): Update hash.
2018-07-26 04:45:33 -04:00
54465c4dbc
gnu: linux-libre@4.14: Update to 4.14.58.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.58.
(%linux-libre-4.14-hash): Update hash.
2018-07-26 04:44:40 -04:00
4bc1528aa5
gnu: linux-libre@4.9: Update to 4.9.115.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.115.
2018-07-26 04:44:00 -04:00
064c3e78dd
gnu: linux-libre@4.4: Update to 4.4.144.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.144.
2018-07-26 04:43:13 -04:00
aaa2a8bbf3
gnu: Remove dangling variable.
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* gnu/packages/xml.scm (libxslt/fixed): Remove.
2018-07-25 20:44:40 +02:00
27b2f34cda
gnu: Update cabextract.org.uk home pages.
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* gnu/packages/compression.scm (libmspack, cabextract)[home-page, source]: Use
HTTPS.
2018-07-25 20:44:40 +02:00
03c16bb59a
gnu: libmspack: Don't build static library.
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* gnu/packages/compression.scm (libmspack)[arguments]: Add #:configure-flags.
2018-07-25 20:44:39 +02:00
b8d7119bc2
gnu: libmspack: Update to 0.7.
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* gnu/packages/compression.scm (libmspack): Update to 0.7.
2018-07-25 20:44:39 +02:00
9a1356f71a
gnu: hplip-minimal: Simplify expression.
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* gnu/packages/cups.scm (hplip-minimal): Remove unnecessary quotes.
2018-07-25 20:44:39 +02:00
8f838591f8
gnu: libjpeg-turbo: Don't build static libraries.
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* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add "--disable-static" to
#:configure-flags.
2018-07-25 20:44:39 +02:00
a77de47ad2
gnu: libjpeg-turbo: Update home page.
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* gnu/packages/image.scm (libjpeg-turbo)[home-page]: Use HTTPS.
2018-07-25 20:44:39 +02:00
8938b369d2
gnu: audit: Don't build static libraries.
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* gnu/packages/admin.scm (audit)[arguments]: Add "--disable-static" to
#:configure-flags.
2018-07-25 20:44:39 +02:00
00f81f83a1
gnu: audit: Update to 2.8.4.
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* gnu/packages/admin.scm (audit): Update to 2.8.4.
[arguments]: Remove #:phases.
2018-07-25 20:44:38 +02:00
95da608451
Merge remote-tracking branch 'origin/master' into qt-updates
2018-07-25 21:30:18 +03:00
2a43df2270
gnu: qt: Disable parallel building.
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* gnu/packages/qt.scm (qt)[arguments]: Disable parallel-build.
2018-07-25 20:27:55 +03:00
d13c1d3363
gnu: qt: Apply changes from qtbase.
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* gnu/packages/qt.scm (qt)[arguments]: In custom 'configure phase, add
flags to specify custom destination directories. Use system pcre. Add
flags to support older versions of the linux kernel. Add custom
'patch-mkspecs phase to search in their new location. Add custom
'patch-paths phase to prevent dynamic loading of certain libraries.
[native-search-paths]: New field.
[license]: Update it.
2018-07-25 20:27:52 +03:00
f88c8624cc
Revert "gnu: quassel: Fix building with Qt 5.11."
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This reverts commit 68ddfb2e8d
2018-07-25 15:18:27 +03:00
b19f3337ea
gnu: Add pscircle.
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* gnu/packages/admin.scm (pscircle): New variable.
2018-07-25 14:54:22 +03:00
8e1895964f
gnu: Add hplip-minimal.
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* gnu/packages/cups.scm (hplip-minimal): New variable.
* gnu/packages/scanner.scm (sane-backends)[inputs]: Replace hplip with
hplip-minimal.
* doc/guix.texi (Printing Services): Change example code to use
hplip-minimal in place of hplip. Add note explaining when use hplip.
2018-07-25 11:52:59 +03:00
39a57afc42
gnu: syncthing: Update to 0.14.49.
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* gnu/packages/syncthing.scm (syncthing): Update to 0.14.49.
[source]: Remove obsolete patch.
[inputs]: Remove go-github-com-kardianos-osext.
* gnu/packages/patches/syncthing-fix-crash.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-07-24 19:07:06 -04:00
869d9c69f3
gnu: go-github-com-syncthing-notify: Update to 0.0.0-1.cdf89c4.
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* gnu/packages/syncthing.scm (go-github-com-syncthing-notify): Update to
0.0.0-1.cdf89c4.
2018-07-24 19:07:06 -04:00
2ed97a22d3
gnu: go-github-com-thejerf-suture: Update to 2.0.3-0.3f1fb62.
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* gnu/packages/syncthing.scm (go-github-com-thejerf-suture): Update to
2.0.3-0.3f1fb62.
2018-07-24 19:07:02 -04:00
49a8684d9f
gnu: java-tomcat: Strip timestamps
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* gnu/package/web.scm (java-tomcat)[arguments]: Add phase 'strip timestamps.
Makes build deterministic.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25 00:27:21 +02:00
8dae9c92b6
gnu: java-tomcat: Remove bundled jars.
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* gnu/packages/web.scm (java-tomcat)[source]: Add snippet to remove bundled jars.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25 00:27:17 +02:00
Ricardo Wurmus