9704bda1b3
gnu: r-matrix: Update to 1.2-8.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
2017-04-06 14:39:12 +02:00
9aea2cdaff
gnu: r-lattice: Update to 0.20-35.
...
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
2017-04-06 14:39:12 +02:00
7ceb26ee83
gnu: r-rprojroot: Update to 1.2.
...
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
2017-04-06 14:39:12 +02:00
d51f05f769
gnu: r-tidyr: Update to 0.6.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
2017-04-06 14:39:10 +02:00
1db293757b
gnu: r-roxygen2: Update to 6.0.1.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
2017-04-06 14:39:10 +02:00
bf6dcf59eb
gnu: Add r-commonmark.
...
* gnu/packages/statistics.scm (r-commonmark): New variable.
2017-04-06 14:39:10 +02:00
1cbb07a8e4
gnu: Add r-desc.
...
* gnu/packages/statistics.scm (r-desc): New variable.
2017-04-06 14:39:10 +02:00
67deeea41b
gnu: r-readr: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
2017-04-06 14:39:09 +02:00
33eb555e6f
gnu: r-tibble: Update to 1.3.0.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
2017-04-06 14:39:09 +02:00
7bf837fd43
gnu: Use HTTPS URLs for GitHub home-pages.
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* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm,
gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm,
gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm,
gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm,
gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on
GitHub.
2017-04-02 20:00:51 -04:00
84157bb8bf
Merge branch 'master' into core-updates
...
Most conflicts are from 6fd52309b8
2017-03-30 22:59:53 +02:00
6fd52309b8
gnu: Use HTTPS for almost all gnu.org HOME-PAGEs.
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All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
2017-03-30 01:30:16 +02:00
378de69c59
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-22 12:57:37 +02:00
e2c4fe7c62
gnu: Add r-cairo.
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* gnu/packages/statistics.scm (r-cairo): New variable.
2017-03-20 21:16:11 +01:00
f67337e23e
Merge branch 'master' into core-updates
2017-03-19 18:52:12 -04:00
60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems.
...
Fixes <https://bugs.gnu.org/25598 >.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
2017-03-17 10:14:02 +01:00
2d7c4ae3ee
gnu: r: Rename to r-minimal.
...
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
f1fe5283c9
gnu: Add r-with-recommended-packages.
...
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
2017-03-17 10:14:02 +01:00
aeb64f3cb2
gnu: r: Do not build recommended packages.
...
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
2017-03-17 10:14:02 +01:00
4b005c7a75
gnu: Add r-spatial.
...
* gnu/packages/statistics.scm (r-spatial): New variable.
2017-03-17 10:14:01 +01:00
567b154fb0
gnu: r-rpart: Move to the set of recommended packages.
...
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
2017-03-17 10:14:01 +01:00
a5a343656b
gnu: r-nnet: Move to set of recommended R packages.
...
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
2017-03-17 10:14:01 +01:00
ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
248f65269a
gnu: Add r-nlme.
...
* gnu/packages/statistics.scm (r-nlme): New variable.
2017-03-17 10:14:01 +01:00
69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
060c12868b
gnu: r-lattice: Move to other recommended R packages.
...
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
2017-03-17 10:14:01 +01:00
e88bad6ddb
gnu: Add r-kernsmooth.
...
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2017-03-17 10:14:00 +01:00
69fddd2d6e
gnu: Add r-foreign.
...
* gnu/packages/statistics.scm (r-foreign): New variable.
2017-03-17 10:14:00 +01:00
c1999c5910
gnu: Add r-codetools.
...
* gnu/packages/statistics.scm (r-codetools): New variable.
2017-03-17 10:14:00 +01:00
a27bfb8484
gnu: Add r-cluster.
...
* gnu/packages/statistics.scm (r-cluster): New variable.
2017-03-17 10:14:00 +01:00
7489258751
gnu: Add r-class.
...
* gnu/packages/statistics.scm (r-class): New variable.
2017-03-17 10:14:00 +01:00
c7e80a7e0d
gnu: Add r-mass.
...
* gnu/packages/statistics.scm (r-mass): New variable.
2017-03-17 10:14:00 +01:00
8f0069170c
gnu: Add r-boot.
...
* gnu/packages/statistics.scm (r-boot): New variable.
2017-03-17 10:14:00 +01:00
3f9543aee1
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-13 23:08:49 +02:00
3288e647e3
gnu: r-hexbin: Update to 1.27.1-1.
...
The package tarball was updated in place, resulting in a change in the hash
value. We decided to bump the version to 1.27.1-1 instead of keeping the
version at upstream's 1.27.1.
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.1-1.
2017-03-13 10:34:00 +01:00
3ffaec136f
gnu: Add a tzdata variant for testing purposes.
...
* gnu/packages/base.scm (tzdata-2017a): New variable.
* gnu/packages/glib.scm (glib)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
* gnu/packages/statistics.scm (r)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
2017-03-12 20:45:46 -04:00
a5935d1946
gnu: Add r-tsne.
...
* gnu/packages/bioinformatics.scm (r-tsne): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
02eec38ee1
gnu: Add r-ranger.
...
* gnu/packages/statistics.scm (r-ranger): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
d1906e3147
gnu: Add r-tclust.
...
* gnu/packages/statistics.scm (r-tclust): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
5a200a24eb
gnu: Add r-sn.
...
* gnu/packages/statistics.scm (r-sn): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
06085b5bc5
gnu: Add r-numderiv.
...
* gnu/packages/statistics.scm (r-numderiv): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
fe68c8a990
gnu: Add r-mnormt.
...
* gnu/packages/statistics.scm (r-mnormt): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
362ea0dc29
gnu: Add r-rcppprogress.
...
* gnu/packages/statistics.scm (r-rcppprogress): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
aa890f6185
gnu: Add r-caret.
...
* gnu/packages/statistics.scm (r-caret): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
ab2ec643c3
gnu: Add r-car.
...
* gnu/packages/statistics.scm (r-car): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
a3eb8c8191
gnu: Add r-pbkrtest.
...
* gnu/packages/statistics.scm (r-pbkrtest): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
51fc7d8c31
gnu: Add r-lme4.
...
* gnu/packages/statistics.scm (r-lme4): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
c549864d90
gnu: Add r-nloptr.
...
* gnu/packages/statistics.scm (r-nloptr): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
49dc1fa5cb
gnu: Add r-quantreg.
...
* gnu/packages/statistics.scm (r-quantreg): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
Ricardo Wurmus