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5577 Commits (9727c33f3bf431472ce61fe4667c93e230d2ca29)

Author SHA1 Message Date
Ricardo Wurmus 85652f599a gnu: Add HTSeq. 
* gnu/packages/bioinformatics.scm (htseq): New variable.
 2015-02-20 19:31:53 +01:00
Ricardo Wurmus 5eb86b64d1 gnu: Add libyaml. 
* gnu/packages/web.scm (libyaml): New variable.
 2015-02-20 19:31:42 +01:00
Andreas Enge 945562d469 gnu: mpc: Update to 1.0.3. 
* gnu/packages/multiprecision.scm (mpc): Update to 1.0.3.
 2015-02-20 16:52:29 +01:00
Andreas Enge f78c66aacc gnu: pari-gp: Update to 2.7.3. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.7.3.
 2015-02-20 16:46:26 +01:00
Ricardo Wurmus 865a69ddc8 gnu: Add arpack-ng. 
* gnu/packages/maths.scm (arpack-ng): New variable.
 2015-02-20 14:26:48 +01:00
Ricardo Wurmus f18f8b7383 gnu: python-scipy: install UTF-8 locale. 
* gnu/packages/python.scm (python-scipy): Install en_US.UTF-8 locale in
  install-doc phase to avoid encoding error.
 2015-02-20 14:25:38 +01:00
Ricardo Wurmus 6754032f0c gnu: matplotlib: install UTF-8 locale. 
* gnu/packages/python.scm (python-matplotlib): Install en_US.UTF-8 locale in
  install-doc phase to avoid encoding error.
 2015-02-20 14:25:30 +01:00
Andreas Enge cd064df7bb gnu: gnupg: Add version 2.1.2. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.2.
  (gnupg-2.0): Copy of previous package for version 2.0.26.
 2015-02-20 10:30:05 +01:00
Andreas Enge 76aae0f96f Add David Hashe to 'AUTHORS'. 2015-02-20 10:14:23 +01:00
Taylan Ulrich Bayırlı/Kammer 66cc3ab218 gnu: Add exim. 
* gnu/packages/mail.scm (exim): New variable.
 2015-02-20 09:39:13 +01:00
David Hashe fc936b65d3 gnu: Add gnugo. 
* gnu/packages/games.scm (gnugo): New variable.
 2015-02-19 23:14:21 -05:00
Mark H Weaver 232010f89d gnu: glibc: Disable parallel build. 
* gnu/packages/base.scm (glibc)[arguments]: Disable parallel build.
 2015-02-19 18:03:28 -05:00
Andreas Enge c18ea90fd9 gnu: Add npth. 
* gnu/packages/gnupg.scm (npth): New variable.
 2015-02-19 21:22:25 +01:00
Ricardo Wurmus 9953fa7602 gnu: Add Ant. 
* gnu/packages/java.scm (ant): New variable.
 2015-02-19 13:48:29 +01:00
Ricardo Wurmus 8622a07280 gnu: Add RSeQC. 
* gnu/packages/bioinformatics.scm (rseqc): New variable.
 2015-02-19 13:41:38 +01:00
Mark H Weaver fdb3162665 gnu: libunistring: Update to 0.9.5. 
* gnu/packages/libunistring.scm (libunistring): Update to 0.9.5.
 2015-02-19 04:12:30 -05:00
Mark H Weaver 04dec194d8 download: Handle HTTP redirects to relative URI references. 
Fixes <http://bugs.gnu.org/19840>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* guix/build/download.scm: On Guile 2.0.11 or earlier, redefine the http
  "Location" header to accept relative URIs.
  (resolve-uri-reference): New exported procedure.
  (http-fetch): Use 'resolve-uri-reference' to resolve redirections.
* guix/http-client.scm (http-fetch): Use 'resolve-uri-reference'
 2015-02-19 03:32:22 -05:00
Eric Bavier e92a4ad928 import: cpan: Use cpan mirror url. 
* guix/import/cpan.scm (cpan-module->sexp)[source-url]: Substitute cpan mirror
  url.
 2015-02-18 23:53:46 -06:00
Eric Bavier a0c2c4b45b import: cpan: Sort inputs. 
* guix/import/cpan.scm (cpan-module->sexp)[convert-inputs]: Sort returned list
  of inputs.
 2015-02-18 23:53:46 -06:00
Eric Bavier 2491d58962 import: cpan: Adjust licenses. 
* guix/import/cpan.scm (string->license): Add artistic2.0.  Use
  '(package-license perl) for "perl_5" as is our convention.
 2015-02-18 23:53:46 -06:00
Eric Bavier 66392e475d import: cpan: Use corelist to filter dependencies. 
* guix/import/cpan.scm (%corelist): New variable.
  (module->dist-name, core-module?): New procedures.
  (cpan-module->sexp)[convert-inputs]: Use them.  Include "test" dependencies
  in converted inputs.
* doc/guix.texi (Invoking guix import)[cpan]: Mention corelist filtering.
 2015-02-18 23:53:46 -06:00
Eric Bavier f8e366230d guix: licenses: Add Artistic 2.0 license. 
* guix/licenses.scm (artistic2.0): New variable.
 2015-02-18 23:53:46 -06:00
Eric Bavier 2d2a53fc24 build-system/perl: Use Build.PL for builds if present. 
* guix/build/perl-build-system.scm (configure): Use Build.PL if present.
  (build, check, install): New procedures.
  (%standard-phases): Replace build, check, and install phases.
* guix/build-system/perl (perl-build): Add make-maker? and module-build-flags
  arguments.
* doc/guix.texi (Build Systems)[perl-build-system]: Document behavior rsp.
  Build.PL and new arguments.
 2015-02-18 23:53:46 -06:00
宋文武 d2fcfd3d42 gnu: gnutls: Move which from 'propagated-inputs' to 'native-inputs'. 
* gnu/packages/gnutls.scm (gnutls): Move which to 'native-inputs'.
  Comment on 'propagated-inputs'.
 2015-02-19 10:33:03 +08:00
宋文武 6f96a359eb gnu: Add libxklavier. 
* gnu/packages/gnome.scm (libxklavier): New variable.
 2015-02-19 10:32:56 +08:00
宋文武 c1944c9272 gnu: libxml2: Propagate input zlib. 
* gnu/packages/xml.scm (libxml2): Move zlib to 'propagated-inputs'.
 2015-02-19 10:32:44 +08:00
Mark H Weaver 0f3d643b0b gnu: xorg-server: Update to 1.16.4. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.16.4.
 2015-02-18 14:33:23 -05:00
Ricardo Wurmus f753846b7a gnu: remove "util-linux" from inputs 
* gnu/packages/audio.scm (aubio, ardour, azr3, lash, patchage): Remove
  "util-linux" from `inputs'.
 2015-02-18 18:19:12 +01:00
Ricardo Wurmus 5d95e30b48 gnu: jack: propagate input "util-linux" 
* gnu/packages/audio.scm (jack-1): Move input "util-linux" to
  `propagated-inputs'.
 2015-02-18 18:19:12 +01:00
Mark H Weaver 447ce59195 gnu: isc-dhcp: Update to 4.3.1. 
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.1.
 2015-02-18 02:46:14 -05:00
Taylan Ulrich Bayırlı/Kammer 3e92f4f945 gnu: Add chibi-scheme. 
* gnu/packages/scheme.scm (chibi-scheme): New variable.
 2015-02-17 09:35:30 +01:00
Taylan Ulrich Bayırlı/Kammer 07f4aef078 gnu: Add gambit-c. 
* gnu/packages/scheme.scm (gambit-c): New variable.
 2015-02-17 09:35:30 +01:00
Ricardo Wurmus 497e9a82bd gnu: Add AZR-3. 
* gnu/packages/audio.scm (azr3): New variable.
 2015-02-17 07:51:50 +01:00
Andreas Enge 5078e98a61 gnu: Add aarddict. 
* gnu/packages/aarddict.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-02-16 21:52:58 +01:00
Andreas Enge 3e291958b0 gnu: Add PyQt for Qt-4. 
* gnu/packages/qt.scm (python-pyqt-4, python2-pyqt-4): New variables.
 2015-02-16 21:16:32 +01:00
Ricardo Wurmus 4443bb8da3 gnu: Add patchage. 
* gnu/packages/audio.scm (patchage): New variable.
 2015-02-16 20:12:33 +01:00
Ricardo Wurmus e926ba716e gnu: Add ganv. 
* gnu/packages/gtk.scm (ganv): New variable.
 2015-02-16 20:12:26 +01:00
Mark H Weaver 192c6f966f gnu: libtool and libltdl: Update to 2.4.6. 
* gnu/packages/autotools.scm (libtool, libltdl): Update to 2.4.6.
* gnu/packages/patches/libtool-skip-tests.patch: Adapt to 2.4.6.
 2015-02-16 10:56:34 -05:00
Ricardo Wurmus cb7e486797 gnu: Add R. 
* gnu/packages/statistics.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it
* guix/download.scm (%mirrors): Add CRAN mirrors.
 2015-02-16 16:35:41 +01:00
Andreas Enge da466f7ff6 utils: Preserve symbolic links in 'wrap-program'. 
* guix/build/utils.scm (wrap-program): Preserve symbolic links instead of
    copying the contents of the link.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>

Closes <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=19743>.
 2015-02-16 10:13:40 +01:00
Andreas Enge b01f89675d utils: Use $0 instead of absolute path to original program in 'wrap-program'. 
* guix/build/utils.scm (wrap-program): Create scripts that use $0 (which is
    usually just the base name) instead of the absolute path to the original
    program. Alternative implementation of 2ed11b3.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>

Closes <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=19742>.
 2015-02-16 10:13:39 +01:00
Andreas Enge d3d656c5fb gnu: python-setuptools: Update to 12.1. 
*  gnu/packages/python.scm (python-setuptools, python2-setuptools):
     Update to 12.1.
 2015-02-15 23:10:58 +01:00
Andreas Enge 431d32e688 gnu: complexity: Update to 1.2. 
* gnu/packages/complexity.scm (complexity): Update to 1.2.
 2015-02-15 20:51:22 +01:00
Andreas Enge 0565587c54 gnu: xboard: Update to 4.8.0. 
* gnu/packages/games.scm (xboard): Update to 4.8.0.
 2015-02-15 20:47:07 +01:00
Andreas Enge 3e74dcd0bb gnu: pinentry: Update to 0.9.0. 
* gnu/packages/gnupg.scm (pinentry): Update to 0.9.0.
 2015-02-15 20:29:53 +01:00
Andreas Enge 2249a16832 gnu: pius: Update to 2.0.11. 
* gnu/packages/gnupg.scm (pius): Update to 2.0.11.
 2015-02-15 19:54:46 +01:00
Andreas Enge 456cf627cd gnu: gpgme: Update to 1.5.3. 
* gnu/packages/gnupg.scm (gpgme): Update to 1.5.3.
 2015-02-15 19:54:36 +01:00
Andreas Enge a02ee3d714 gnu: libgpg-error: Update to 1.18. 
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.18.
 2015-02-15 19:36:13 +01:00
Andreas Enge 9e91418b10 gnu: freetype: Update to 2.5.5. 
* gnu/packages/fontutils.scm (freetype): Update to 2.5.5.
 2015-02-15 19:18:29 +01:00
Taylan Ulrich Bayırlı/Kammer b702b52de3 gnu: Add SBCL. 
* gnu/packages/lisp.scm (sbcl): New variable.
 2015-02-15 15:31:05 +01:00