5cc7cff6ef
gnu: r-org-hs-eg-db: Update to 3.3.0.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.3.0.
2016-09-12 17:44:48 +02:00
401528b2b5
gnu: r-go-db: Update to 3.3.0.
...
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.3.0.
2016-09-12 17:44:48 +02:00
87a7c55ebd
gnu: r-rmarkdown: Update to 1.0.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.0.
[propagated-inputs]: Add "r-jsonlite" and "r-base64enc".
2016-09-12 17:44:48 +02:00
de1eebd7d7
gnu: r-dplyr: Update to 0.5.0.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.5.0.
2016-09-12 17:44:48 +02:00
5e67507273
gnu: r-rcpparmadillo: Update to 0.7.400.2.0.
...
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
2016-09-12 17:44:47 +02:00
1b7f85f52d
gnu: r-tidyr: Update to 0.6.0.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.0.
2016-09-12 17:44:47 +02:00
c3253ce1b5
gnu: r-irlba: Update to 2.1.1.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.1.
2016-09-12 17:44:47 +02:00
f791b689b2
gnu: r-dt: Update to 0.2.
...
* gnu/packages/statistics.scm (r-dt): Update to 0.2.
2016-09-12 17:44:47 +02:00
7931531a23
gnu: r-sparsem: Update to 1.72.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.72.
2016-09-12 17:44:47 +02:00
b9ab3b08b8
gnu: r-lambda-r: Update to 1.1.9.
...
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.1.9.
2016-09-12 17:44:47 +02:00
27f10d3db2
gnu: r-futile-logger: Update to 1.4.3.
...
* gnu/packages/statistics.scm (r-futile-logger): Update to 1.4.3.
2016-09-12 17:44:46 +02:00
fce4dfd82e
gnu: r-lattice: Update to 0.20-34.
...
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-34.
2016-09-12 17:44:46 +02:00
bdfc2c954e
gnu: r-plotrix: Update to 3.6-3.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-3.
2016-09-12 17:44:46 +02:00
8c6e2b843e
gnu: r-readr: Update to 1.0.0.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.0.0.
[propagated-inputs]: Add "r-hms", "r-tibble", and "r-r6".
2016-09-12 17:44:46 +02:00
b90314b4f8
gnu: Add r-hms.
...
* gnu/packages/statistics.scm (r-hms): New variable.
2016-09-12 17:44:46 +02:00
a589acfb08
gnu: Add r-tibble.
...
* gnu/packages/statistics.scm (r-tibble): New variable.
2016-09-12 17:44:46 +02:00
348bb8d663
gnu: r-withr: Update to 1.0.2.
...
* gnu/packages/statistics.scm (r-withr): Update to 1.0.2.
2016-09-12 17:44:45 +02:00
3bb9708a7f
gnu: r-devtools: Update to 1.12.0.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.12.0.
2016-09-12 17:44:45 +02:00
e2cfac445e
gnu: r-rstudioapi: Update to 0.6.
...
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.6.
2016-09-12 17:44:45 +02:00
e58498b6ee
gnu: r-httr: Update to 1.2.1.
...
* gnu/packages/statistics.scm (r-httr): Update to 1.2.1.
2016-09-12 17:44:45 +02:00
130c3c8b93
gnu: r-openssl: Update to 0.9.4.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.4.
2016-09-12 17:44:45 +02:00
81147fe886
gnu: r-rversions: Update to 1.0.3.
...
* gnu/packages/statistics.scm (r-rversions): Update to 1.0.3.
2016-09-12 17:44:45 +02:00
03306201a7
gnu: r-multitaper: Update to 1.0-12.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-12.
2016-09-12 17:44:45 +02:00
e2ad0228fc
gnu: r-xml2: Update to 1.0.0.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.0.0.
2016-09-12 17:44:44 +02:00
ef82bd5888
gnu: r-r6: Update to 2.1.3.
...
* gnu/packages/statistics.scm (r-r6): Update to 2.1.3.
2016-09-12 17:44:44 +02:00
344d5323d6
gnu: r-crayon: Update to 1.3.2.
...
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.2.
2016-09-12 17:44:44 +02:00
ad28491e12
gnu: r-knitr: Update to 1.14.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.14.
2016-09-12 17:44:44 +02:00
2d037a2d68
gnu: r-mime: Update to 0.5.
...
* gnu/packages/statistics.scm (r-mime): Update to 0.5.
2016-09-12 17:44:44 +02:00
5b67bd6e8f
gnu: r-dbi: Update to 0.5-1.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.5-1.
2016-09-12 17:44:43 +02:00
6d6a917a16
gnu: r-lazyeval: Update to 0.2.0.
...
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.0.
2016-09-12 17:44:43 +02:00
bf1e9e4517
gnu: r-stringr: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-stringr): Update to 1.1.0.
2016-09-12 17:44:43 +02:00
1f94ede8ea
gnu: r-stringi: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.1.
2016-09-12 17:44:43 +02:00
deb265a7b3
gnu: r-plyr: Update to 1.8.4.
...
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.4.
2016-09-12 17:44:43 +02:00
8b2f96e73a
gnu: r-permute: Update to 0.9-4.
...
* gnu/packages/statistics.scm (r-permute): Update to 0.9-4.
2016-09-12 17:44:43 +02:00
21f45c9d9e
gnu: r-mgcv: Update to 1.8-14.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-14.
2016-09-12 17:44:42 +02:00
cb27d6ba4e
gnu: r-rcpp: Update to 0.12.7.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.7.
2016-09-12 17:44:42 +02:00
5aaa12dfb5
gnu: r-digest: Update to 0.6.10.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.10.
2016-09-12 17:44:42 +02:00
44f711dbe6
gnu: r-biocparallel: Update to 1.6.6.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.6.
2016-09-12 17:44:42 +02:00
10e479a7c0
gnu: r-genomicranges: Update to 1.24.3.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.3.
2016-09-12 17:44:42 +02:00
01ebbb1b76
gnu: r-limma: Update to 3.28.21.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.21.
2016-09-12 17:44:42 +02:00
bbf53cb527
gnu: r-variantannotation: Update to 1.18.7.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.7.
2016-09-12 17:44:42 +02:00
4fa7091d54
gnu: r-genomeinfodb: Update to 1.8.7.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.7.
2016-09-12 17:44:41 +02:00
3b851cd4ac
gnu: r-seqinr: Update to 3.3-1.
...
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-1.
[propagated-inputs]: Add "r-segmented".
2016-09-12 17:44:41 +02:00
3e4c0c6662
gnu: Add r-segmented.
...
* gnu/packages/statistics.scm (r-segmented): New variable.
2016-09-12 17:44:41 +02:00
2b1cc79d98
gnu: r-s4vectors: Update to 0.10.3.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.3.
2016-09-12 17:44:41 +02:00
0b54b4c986
gnu: r-acsnminer: Update to 0.16.8.25.
...
* gnu/packages/bioinformatics.scm (r-acsnminer): Update to 0.16.8.25.
2016-09-12 17:44:41 +02:00
2c575bb9a2
gnu: r-vegan: Update to 2.4-1.
...
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-1.
2016-09-12 17:44:40 +02:00
02a87536bf
gnu: r-curl: Update to 1.2.
...
* gnu/packages/web.scm (r-curl): Update to 1.2.
2016-09-12 17:44:40 +02:00
cc1446acc7
gnu: r-htmlwidgets: Update to 0.7.
...
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.7.
2016-09-12 17:44:40 +02:00
4df0cb8d05
gnu: r-jsonlite: Update to 1.0.
...
* gnu/packages/web.scm (r-jsonlite): Update to 1.0.
2016-09-12 17:44:40 +02:00
ccd9b1511e
gnu: r-pracma: Update to 1.9.5.
...
* gnu/packages/maths.scm (r-pracma): Update to 1.9.5.
[propagated-inputs]: Add "r-quadprog".
2016-09-12 17:44:40 +02:00
2d047896f9
gnu: Add r-quadprog.
...
* gnu/packages/maths.scm (r-quadprog): New variable.
2016-09-12 17:44:40 +02:00
39fb629535
gnu: (cfitsio, wcslib): Change return values of custom phases.
...
* gnu/packages/astronomy.scm (cfitsio, wcslib): Return #t from patch phases.
2016-09-12 17:35:03 +02:00
378920defc
gnu: python-django: Add patch file.
...
* gnu/packages/patches/python-django-fix-testcase.patch: New file.
This is a follow-up to commit d18197af78
2016-09-12 17:27:33 +02:00
ac8a642886
gnu: tre: Move to (gnu packages regex).
...
* gnu/packages/tre.scm: Remove. Move 'tre' to...
* gnu/packages/regex.scm (tre): ... here. New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
Signed-off-by: Alex Kost <alezost@gmail.com>
2016-09-12 16:38:03 +03:00
f32ffa04ba
gnu: emacs: Use https for elpa.gnu.org.
...
* gnu/packages/emacs.scm: Use 'https' for all elpa.gnu.org URLs.
Signed-off-by: Alex Kost <alezost@gmail.com>
2016-09-12 16:38:03 +03:00
b53fc2940f
gnu: Add python-django-simple-math-captcha.
...
* gnu/packages/django.scm: (python-django-simple-math-captcha)
(python2-django-simple-math-captcha): New variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-12 15:27:46 +02:00
d18197af78
gnu: Add python-django.
...
* gnu/packages/django.scm: New file.
* gnu/packages/patches/python-django-fix-testcase.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add django.scm.
(dist_patch_DATA): Add python-django-fix-testcase.patch.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-09-12 15:27:46 +02:00
57dbf577f0
gnu: parallel: Update to 20160822.
...
* gnu/packages/parallel.scm (parallel): Update to 20160822.
2016-09-12 12:59:13 +03:00
44177bc040
gnu: vapoursynth: Update to 33.1.
...
* gnu/packages/video.scm (vapoursynth): Update to 33.1.
2016-09-12 12:30:19 +03:00
b6337f30cc
gnu: tbb: Update to 2017.
...
* gnu/packages/tbb.scm (tbb): Update to 2017.
[license]: Change to ASL2.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-12 10:37:39 +03:00
8d4169a1d1
gnu: Add Impressive.
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* gnu/packages/pdf.scm (impressive): New variable.
2016-09-12 00:57:46 +02:00
55fb8d7485
gnu: texinfo: Add 6.3.
...
* gnu/packages/texinfo.scm (texinfo-6.3): New variable.
2016-09-11 23:44:24 +02:00
ee6bc65f7c
gnu: mpd: Remove unused glib-or-gtk-build-system module.
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* gnu/packages/mpd.scm (define-module): Don't import
'glib-or-gtk-build-system'.
2016-09-11 14:11:08 -04:00
aeca1c0ec5
gnu: Add pybitmessage.
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* gnu/packages/messaging.scm (pybitmessage): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-11 20:57:05 +03:00
29e83e1c70
gnu: messaging: Use license: prefix.
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* gnu/packages/disk.scm (define-module): Import guix licenses with a prefix.
(libotr): Use the license prefix.
(bitlbee): Likewise.
(hexchat): Likewise.
(ngircd): Likewise.
(pidgin): Likewise.
(pidgin-otr): Likewise.
(znc): Likewise.
(python-nbxmpp): Likewise.
(gajim): Likewise.
(prosody): Likewise.
(libtoxcore): Likewise.
(utox): Likewise.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-11 20:55:34 +03:00
6d8e14d0ba
gnu: Add python2-pyqt-4.
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* gnu/packages/qt.scm (python2-pyqt-4): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-11 20:49:22 +03:00
4d4a6ed775
gnu: zimg: Update to 2.2.1.
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* gnu/packages/image.scm (zimg): Update to 2.2.1.
2016-09-11 13:04:00 -04:00
35eade9cf3
gnu: jbig2dec: Update to 0.13.
...
* gnu/packages/image.scm (jbig2dec): Update to 0.13.
[source]: Update URL.
[home-page]: Update URL.
* gnu/packages/patches/jbig2dec-ignore-testtest.patch: Adjust patch.
2016-09-11 13:04:00 -04:00
cbe2cc02fb
gnu: jpegoptim: Update to 1.4.4.
...
* gnu/packages/image.scm (jpegoptim): Update to 1.4.4.
2016-09-11 13:04:00 -04:00
9f20f7f841
gnu: libupnp: Update to 1.6.20.
...
* gnu/packages/libupnp.scm (libupnp): Update to 1.6.20.
2016-09-11 11:31:40 -04:00
6c86cef5d3
gnu: Add sonata
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* gnu/packages/mpd.scm (sonata): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-11 11:07:19 -04:00
381000d794
gnu: python-git-review: Wrap it so 'git', 'ssh' and 'scp' are found.
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* gnu/packages/openstack.scm (python-git-review)[arguments]: Add
'wrap-program' phase.
[inputs]: Add openssh.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-11 10:01:18 +03:00
90d8ef6bcb
gnu: gnunet: Use 'modify-phases'.
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* gnu/packages/gnunet.scm (gnunet)[arguments]: Use 'modify-phases'.
2016-09-11 09:08:10 +03:00
b9fe72bf4d
gnu: gnurl: Use 'modify-phases'.
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* gnu/packages/gnunet.scm (gnurl)[arguments]: Use 'modify-phases'.
2016-09-11 09:06:02 +03:00
c543b4e1d3
gnu: gnurl: Update to 7.50.2-1.
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* gnu/packages/gnunet.scm (gnurl): Update to 7.50.2-1.
[arguments]: Remove 'delete-failing-test1139 phase.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-11 08:55:19 +03:00
5f4d09b52c
gnu: go-1.7: Update to 1.7.1.
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* gnu/packages/golang.scm (go-1.7): Update to 1.7.1.
2016-09-11 01:23:34 -04:00
7c1fedd0d7
gnu: linux-libre: Update to 4.7.3.
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* gnu/packages/linux.scm (linux-libre): Update to 4.7.3.
2016-09-10 22:11:21 -04:00
5ed67c812f
gnu: linux-libre@4.4: Update to 4.4.20.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.20.
2016-09-10 22:11:19 -04:00
4bf184caa4
gnu: linux-libre@4.1: Update to 4.1.32.
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* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.32.
2016-09-10 22:11:12 -04:00
cab1760de2
gnu: icedtea-8: Hardcode dynamically loaded libraries.
...
Fixes <https://bugs.gnu.org/24327 >.
* gnu/packages/java.scm (icedtea-8)[arguments]: Add 'patch-jni-libs' phase.
2016-09-11 10:10:11 +08:00
dd4476214c
gnu: python-cachecontrol: Correct parentheses.
...
This commit is a follow-up to 'b30565b'.
* gnu/packages/python.scm (python-cachecontrol): Correct parentheses.
2016-09-11 11:32:45 +10:00
b30565bd8a
gnu: Add python-cachecontrol.
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* gnu/packages/python.scm (python-cachecontrol, python2-cachecontrol):
New variables.
2016-09-11 09:48:54 +10:00
debf4179b4
gnu: python-pillow: Update to 3.3.1.
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* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.3.1.
2016-09-10 18:37:34 -04:00
84be3b9920
gnu: Add mash.
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* gnu/packages/bioinformatics.scm (mash): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-10 17:41:38 -04:00
0e790a7ce0
gnu: Add edi.
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* gnu/packages/enlightenment.scm (edi): New variable.
2016-09-10 22:48:50 +03:00
2203e4c279
gnu: tig: Install man pages.
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* gnu/packages/version-control.scm (tig)[native-inputs]: Add asciidoc, xmlto.
2016-09-10 22:39:46 +03:00
d0e11e8b52
gnu: tig: Add search completion and history support.
...
* gnu/packages/version-control.scm (tig)[inputs]: Add readline.
2016-09-10 22:39:46 +03:00
50feff817b
gnu: tig: Update to 2.2.
...
* gnu/packages/version-control.scm (tig): Update to 2.2.
2016-09-10 22:39:46 +03:00
3b38d78e9f
gnu: Add utox.
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* gnu/packages/messaging.scm (utox): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-10 22:39:46 +03:00
eb64bde158
gnu: Add filteraudio.
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* gnu/packages/audio.scm (filteraudio): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-10 22:39:46 +03:00
766c1488cc
gnu: glew: Update to 2.0.0.
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* gnu/packages/gl.scm (glew): Update to 2.0.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-10 14:42:22 -04:00
e71479747b
gnu: pdf: Remove erroneous module import.
...
This is a followup to commit c41d97bed6
2016-09-10 01:16:48 -04:00
56ab55d1df
gnu: letsencrypt: Superseded by certbot.
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* gnu/packages/tls.scm (letsencrypt)[properties]: New field.
2016-09-09 21:47:02 -04:00
2884c63cbc
gnu: Remove openjpeg-2.0.
...
* gnu/packages/image.scm (openjpeg-2.0): Remove variable.
2016-09-09 21:03:20 -04:00
c41d97bed6
gnu: mupdf: Update to 1.9a.
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* gnu/packages/pdf.scm (mupdf): Update to 1.9a.
[source]: Use "mupdf-build-with-openjpeg-2.1.patch". Adjust snippet to
preserve bundled 'thirdparty/mujs'.
[inputs]: Add harfbuzz. Replace openjpeg-2.0 with openjpeg.
* gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-09 21:03:20 -04:00
4ce01773f3
gnu: openjpeg: Fix CVE-2016-5157.
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* gnu/packages/patches/openjpeg-CVE-2016-5157.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg): Use it.
2016-09-09 21:03:19 -04:00
0f97e7e5cd
gnu: openjpeg-2.*: Fix CVE-2016-7163.
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* gnu/packages/patches/openjpeg-CVE-2016-7163.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg, openjpeg-2.0): Use it.
2016-09-09 21:03:19 -04:00
876d80d424
gnu: openjpeg: Update to 2.1.1.
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* gnu/packages/image.scm (openjpeg): Update to 2.1.1.
[source]: Use GitHub URL and add file-name field. Remove
"openjpeg-use-after-free-fix.patch" and "openjpeg-CVE-2015-6581.patch" from
patches.
2016-09-09 21:03:19 -04:00
4b6da268ff
gnu: bamm: Update to 1.7.3.
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* gnu/packages/bioinformatics.scm (bamm): Update to 1.7.3.
2016-09-10 09:47:42 +10:00
Ricardo Wurmus