9996ab16e6
gnu: gimp: Fix CVE-2016-4994.
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* gnu/packages/patches/gimp-CVE-2016-4994.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gimp.scm (gimp): Use it.
2016-07-02 10:13:55 -04:00
328ae34112
gnu: python-sphinx-repoze-autointerface: Update to 0.8.
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* gnu/packages/python.scm (python-sphinx-repoze-autointerface,
python2-sphinx-repoze-autointerface): Update to 0.8.
2016-07-01 20:55:53 -04:00
07abcc2e73
gnu: imagemagick: Update to 6.9.5-0.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-0.
2016-07-01 20:27:09 -04:00
9c509ca9a6
gnu: python-cryptography, python-cryptography-vectors: Update to 1.3.4.
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* gnu/packages/python.scm (python-cryptography, python2-cryptography):
Update to 1.3.4.
[source]: Use pypi-uri.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.3.4.
[source]: Use pypi-uri.
2016-07-01 20:23:07 -04:00
d5da7ee418
gnu: rofi: Update to 1.1.0.
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* gnu/packages/xdisorg.scm (rofi): Update to 1.1.0.
2016-07-01 17:30:16 +03:00
5bf834225a
gnu: libreoffice: Update to 5.1.4.2 [fixes CVE-2016-4324].
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* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.4.2.
[native-inputs]: Switch python to python-wrapper.
[arguments]: Add '--without-doxygen' and '--disable-gtk3'.
2016-07-01 15:53:08 +03:00
2638ec61e0
gnu: orcus: Update to 0.9.2.
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* gnu/packages/libreoffice.scm (orcus): Update to 0.9.2.
2016-07-01 15:51:32 +03:00
71830f0e49
gnu: vsearch: Update to 2.0.1.
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* gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.1.
2016-07-01 09:01:28 +10:00
c7f04517a6
gnu: Add r-glmnet.
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* gnu/packages/statistics.scm (r-glmnet): New variable.
2016-07-01 09:01:20 +10:00
84d08af653
gnu: busybox: Use 'modify-phases'.
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* gnu/packages/busybox.scm (busybox)[arguments]: Use 'modify-phases'.
2016-06-30 19:11:45 +03:00
2e5505e5ea
gnu: busybox: Update to 1.25.0.
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* gnu/packages/busybox.scm (busybox): Update to 1.25.0.
[native-inputs]: Add which.
2016-06-30 19:11:27 +03:00
5fc4df0cb5
gnu: owncloud-client: Remove some bundled libs.
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* gnu/packages/owncloud.scm (owncloud-client)[source]: Add a snippet
removing some of the 3rd party projects.
2016-06-30 10:56:57 +03:00
9b1c1ea129
gnu: owncloud-client: Update to 2.2.2.
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* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.2.
2016-06-30 09:55:18 +03:00
f4155188c3
gnu: Add python-prompt-toolkit.
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* gnu/packages/python.scm (python-prompt-toolkit, python2-prompt-toolkit):
New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-06-29 22:31:05 -04:00
e4875826d8
gnu: python-wcwidth: Add missing 'properties' field.
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This is a followup to commit a44fd439dc
2016-06-29 22:25:44 -04:00
468e0b18d1
gnu: ceres-solver: Propagate GLOG.
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* gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to...
[propagated-inputs]: ... here. New field.
2016-06-29 16:08:46 +02:00
8dec2229a2
gnu: blast+: Update to 2.4.0.
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* gnu/packages/bioinformatics.scm (blast+): Update to 2.4.0.
2016-06-29 22:42:47 +10:00
bc3a2e3503
gnu: ceres-solver: Depend on glog.
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* gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON.
[inputs]: Add GLOG.
2016-06-29 12:01:05 +02:00
53d159f843
gnu: Add glog.
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* gnu/packages/logging.scm (glog): New variable.
2016-06-29 11:13:03 +02:00
2de091f0c8
gnu: node: Make sure 'npm' remains a symlink after 'patch-shebangs'.
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Fixes <http://bugs.gnu.org/23744 >.
Reported by Jovany Leandro G.C <bit4bit@riseup.net>
and Jelle Licht <jlicht@fsfe.org>.
* gnu/packages/node.scm (node)[arguments]: Replace 'patch-shebangs'
phase.
2016-06-29 10:06:18 +02:00
c2c36f5fab
gnu: openexr: Install 'ImfStdIO.h'.
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* gnu/packages/graphics.scm (openexr)[source](snippet): Modify
IlmImf/Makefile.in so that it installs 'ImfStdIO.h'.
2016-06-29 10:06:18 +02:00
b0069a6777
gnu: avrdude: Use libusb-compat.
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* gnu/packages/patches/avrdude-fix-libusb.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch.
[inputs]: Replace "libusb" with "libusb-compat".
2016-06-29 07:15:33 +02:00
3bce0f14b2
gnu: star: Update to 2.5.2a.
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* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
2016-06-29 10:14:22 +10:00
6c737963f6
gnu: htslib: Update to 1.3.1.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
2016-06-29 10:14:22 +10:00
ec9466388e
gnu: Add SEEK.
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* gnu/packages/bioinformatics.scm (seek): New variable.
2016-06-28 22:49:05 +02:00
d6e374a0d9
gnu: mafft: Update to 7.299.
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* gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
2016-06-28 21:42:15 +10:00
48d4ce6ea3
Revert "gnu: qtbase: Don't propagate mesa."
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This reverts commit 763a8e6e23
2016-06-28 14:33:37 +03:00
45469ebe52
gnu: metabat: Update to 0.26.3.
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* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3.
[arguments]: Update include and linking paths accordingly.
2016-06-28 21:28:06 +10:00
af45244e36
gnu: diamond: Update to 0.8.9.
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
2016-06-28 19:31:25 +10:00
05e9f30f1e
gnu: r: Add pango to inputs.
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* gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
2016-06-28 09:36:00 +02:00
aea7d1d516
gnu: Add orage.
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* gnu/packages/xfce.scm (orage): New variable.
2016-06-27 12:58:06 -04:00
06961617a1
gnu: python2-orator: Rearrange inputs.
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* gnu/packages/python.scm (python2-orator)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
b26760302a
gnu: python-orator: Rearrange inputs.
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* gnu/packages/python.scm (python-orator)[native-inputs]: Move
python-arrow, python-blinker, python-cleo, python-fake-factory,
python-inflection, python-lazy-object-proxy, python-pyaml,
python-simplejson, python-wrapt ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
24c9aa1810
gnu: python2-fake-factory: Rearrange inputs.
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* gnu/packages/python.scm (python2-fake-factory)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
bbcd729791
gnu: python-fake-factory: Rearrange inputs.
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* gnu/packages/python.scm (python-fake-factory)[native-inputs]: Move
python-dateutil-2, python-six ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
d42560bdfa
gnu: python-email-validator: Rearrange inputs.
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* gnu/packages/python.scm (python-email-validator)[native-inputs]: Move
python-dnspython, python-idna ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
9403150a96
gnu: python-cleo: Rearrange inputs.
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* gnu/packages/python.scm (python-cleo)[native-inputs]: Move
python-psutil, python-pylev ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
36aed73648
gnu: python-arrow: Rearrange inputs.
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* gnu/packages/python.scm (python-arrow)[native-inputs]: Move
python-dateutil-2 ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
c8fa3d9b73
gnu: python-pykafka: Rearrange inputs.
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* gnu/packages/python.scm (python-pykafka)[native-inputs]: Move
python-gevent, python-kazoo, python-tabulate ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
c18899e8cf
gnu: python-kazoo: Rearrange inputs.
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* gnu/packages/python.scm (python-kazoo)[native-inputs]: Move
six ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
4591217058
gnu: python-twisted: Rearrange inputs.
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* gnu/packages/python.scm (python-twisted)[native-inputs]: Move
python-zope-interface ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
7a2941a83e
gnu: Add Go 1.4.
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* gnu/local.mk: Modified file.
* gnu/packages/golang.scm: New file.
Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
Co-authored-by: Andy Wingo <wingo@igalia.com>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-06-27 14:09:10 +02:00
94ff31572d
gnu: Add khmer.
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* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-06-27 21:35:16 +10:00
9ded145717
gnu: Add python-screed.
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* gnu/packages/bioinformatics.scm (python-screed, python2-screed):
New variables.
2016-06-27 21:16:39 +10:00
095b7fea44
gnu: qttools: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qttools): Update to 5.6.1-1.
2016-06-27 05:25:32 +03:00
677b98ae68
gnu: qtlocation: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtlocation): Update to 5.6.1-1.
2016-06-27 05:25:30 +03:00
a2a256562f
gnu: qtwebchannel: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtwebchannel): Update to 5.6.1-1.
2016-06-27 05:25:27 +03:00
33741e16f4
gnu: qtserialport: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtserialport): Update to 5.6.1-1.
[inputs]: Add eudev.
2016-06-27 05:25:10 +03:00
66f26a35f1
gnu: qtwayland: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtwayland): Update to 5.6.1-1.
2016-06-27 05:25:05 +03:00
99f6f56f4f
gnu: qtmultimedia: Update to 5.6.1-1.
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* gnu/packages/qt.scm (qtmultimedia): Update to 5.6.1-1.
2016-06-27 05:25:02 +03:00
Leo Famulari