Commit Graph

14699 Commits (99bcae94bcd50fc15bf44b5cc06cd39450f01ad5)

Author SHA1 Message Date
Ricardo Wurmus 2cea968e41
gnu: r-s4vectors: Update to 0.12.2.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.2.
2017-04-06 14:39:21 +02:00
Ricardo Wurmus 7d05eb2dcc
gnu: r-iranges: Update to 2.8.2.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.2.
2017-04-06 14:39:21 +02:00
Ricardo Wurmus e89cf15091
gnu: r-variantannotation: Update to 1.20.3.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.3.
2017-04-06 14:39:21 +02:00
Ricardo Wurmus 3506a62762
gnu: r-limma: Update to 3.30.13.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.13.
2017-04-06 14:39:21 +02:00
Ricardo Wurmus 4cd4721dbb
gnu: r-genomicranges: Update to 1.26.4.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.4.
2017-04-06 14:39:20 +02:00
Ricardo Wurmus 69b356efce
gnu: r-annotationdbi: Update to 1.36.2.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.2.
2017-04-06 14:39:20 +02:00
Ricardo Wurmus 5cc3b7a548
gnu: r-genomicalignments: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.10.1.
2017-04-06 14:39:20 +02:00
Ricardo Wurmus 25d8854723
gnu: r-rtracklayer: Update to 1.34.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.2.
2017-04-06 14:39:20 +02:00
Ricardo Wurmus 9ce6cb082e
gnu: r-genomicfeatures: Update to 1.26.4.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.4.
2017-04-06 14:39:20 +02:00
Ricardo Wurmus 57ac1d2f03
gnu: r-seqminer: Update to 5.7.
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 5.7.
2017-04-06 14:39:19 +02:00
Ricardo Wurmus e8bec95e69
gnu: r-maldiquant: Update to 1.16.2.
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.16.2.
2017-04-06 14:39:19 +02:00
Ricardo Wurmus 20e97759bf
gnu: r-ranger: Update to 0.7.0.
* gnu/packages/statistics.scm (r-ranger): Update to 0.7.0.
2017-04-06 14:39:19 +02:00
Ricardo Wurmus da2260f96c
gnu: r-pbkrtest: Update to 0.4-7.
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.4-7.
2017-04-06 14:39:19 +02:00
Ricardo Wurmus 4328bad2cd
gnu: r-rcppeigen: Update to 0.3.2.9.1.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.2.9.1.
2017-04-06 14:39:19 +02:00
Ricardo Wurmus a977576780
gnu: r-mclust: Update to 5.2.3.
* gnu/packages/statistics.scm (r-mclust): Update to 5.2.3.
2017-04-06 14:39:18 +02:00
Ricardo Wurmus 0007e645d9
gnu: r-ggthemes: Update to 3.4.0.
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.4.0.
2017-04-06 14:39:18 +02:00
Ricardo Wurmus 47f37fd169
gnu: r-statmod: Update to 1.4.29.
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.29.
2017-04-06 14:39:18 +02:00
Ricardo Wurmus 4c7ab0309a
gnu: r-vipor: Update to 0.4.5.
* gnu/packages/statistics.scm (r-vipor): Update to 0.4.5.
2017-04-06 14:39:18 +02:00
Ricardo Wurmus 2fe41e0fad
gnu: r-pracma: Update to 2.0.4.
* gnu/packages/maths.scm (r-pracma): Update to 2.0.4.
2017-04-06 14:39:18 +02:00
Ricardo Wurmus 2f44ef97a5
gnu: r-mixtools: Update to 1.1.0.
* gnu/packages/statistics.scm (r-mixtools): Update to 1.1.0.
[propagated-inputs]: Remove "r-boot", add "r-survival".
2017-04-06 14:39:17 +02:00
Ricardo Wurmus 7a8efc81f8
gnu: r-viridis: Update to 0.4.0.
* gnu/packages/statistics.scm (r-viridis): Update to 0.4.0.
[propagated-inputs]: Add "r-viridislite".
2017-04-06 14:39:17 +02:00
Ricardo Wurmus b5d5344f32
gnu: r-viridislite: Update to 0.2.0.
* gnu/packages/statistics.scm (r-viridislite): Update to 0.2.0.
2017-04-06 14:39:17 +02:00
Ricardo Wurmus cdadca5e6f
gnu: r-matrixstats: Update to 0.52.1.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.1.
2017-04-06 14:39:17 +02:00
Ricardo Wurmus af7a4cc8a8
gnu: r-mvtnorm: Update to 1.0-6.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-6.
2017-04-06 14:39:17 +02:00
Ricardo Wurmus 82b281fe12
gnu: r-e1071: Update to 1.6-8.
* gnu/packages/statistics.scm (r-e1071): Update to 1.6-8.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus 1d1fbb7336
gnu: r-sparsem: Update to 1.76.
* gnu/packages/statistics.scm (r-sparsem): Update to 1.76.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus fb708a1c74
gnu: r-xml: Update to 3.98-1.6.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.6.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus 1c27bb8f44
gnu: r-rsqlite: Update to 1.1-2.
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-2.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus 0def707ad8
gnu: r-rmarkdown: Update to 1.4.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.4.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus ac5e810205
gnu: r-bbmisc: Update to 1.11.
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.11.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus f1870aef99
gnu: r-backports: Update to 1.0.5.
* gnu/packages/statistics.scm (r-backports): Update to 1.0.5.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus d05e45f33c
gnu: r-multitaper: Update to 1.0-13.
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus 0fbae8ebca
gnu: r-xml2: Update to 1.1.1.
* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus c6e40db528
gnu: r-ade4: Update to 1.7-6.
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus 10ffdb94e4
gnu: r-data-table: Update to 1.10.4.
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus 9e8fac0c45
gnu: r-chron: Update to 2.3-50.
* gnu/packages/statistics.scm (r-chron): Update to 2.3-50.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus b8acb5aa46
gnu: r-cluster: Update to 2.0.6.
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus e8988ff9a0
gnu: r-dbi: Update to 0.6-1.
* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus 5e0fa201a2
gnu: r-gdtools: Update to 0.1.4.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus 7267f358a0
gnu: r-stringr: Update to 1.2.0.
* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus 5beda28f6b
gnu: r-stringi: Update to 1.1.3.
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus 69a8ed6a12
gnu: r-rcpp: Update to 0.12.10.
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus 9948b8e24c
gnu: r-digest: Update to 0.6.12.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.12.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus 344e4741a1
gnu: r-survival: Update to 2.41-3.
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus a6dcc78cb0
gnu: r-mgcv: Update to 1.8-17.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus 9704bda1b3
gnu: r-matrix: Update to 1.2-8.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
2017-04-06 14:39:12 +02:00
Ricardo Wurmus 9aea2cdaff
gnu: r-lattice: Update to 0.20-35.
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
2017-04-06 14:39:12 +02:00
Ricardo Wurmus 7ceb26ee83
gnu: r-rprojroot: Update to 1.2.
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
2017-04-06 14:39:12 +02:00
Ricardo Wurmus e15f962fef
gnu: r-htmltable: Update to 1.9.
* gnu/packages/web.scm (r-htmltable): Update to 1.9.
[propagated-inputs]: Add "r-checkmate" and "r-htmlwidgets".
2017-04-06 14:39:11 +02:00
Ricardo Wurmus d3812fb233
gnu: r-curl: Update to 2.4.
* gnu/packages/web.scm (r-curl): Update to 2.4.
2017-04-06 14:39:11 +02:00
Ricardo Wurmus 4cd07e487e
gnu: r-genomeinfodb: Update to 1.10.3.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.3.
[propagated-inputs]: Add "r-rcurl".
2017-04-06 14:39:11 +02:00
Ricardo Wurmus acbeb2d56b
gnu: r-xvector: Update to 0.14.1.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.1.
2017-04-06 14:39:11 +02:00
Ricardo Wurmus da250f733a
gnu: r-bioccheck: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.10.1.
[propagated-inputs]: Remove "r-knitr" and "r-devtools".
2017-04-06 14:39:11 +02:00
Ricardo Wurmus d51f05f769
gnu: r-tidyr: Update to 0.6.1.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
2017-04-06 14:39:10 +02:00
Ricardo Wurmus 1db293757b
gnu: r-roxygen2: Update to 6.0.1.
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
2017-04-06 14:39:10 +02:00
Ricardo Wurmus bf6dcf59eb
gnu: Add r-commonmark.
* gnu/packages/statistics.scm (r-commonmark): New variable.
2017-04-06 14:39:10 +02:00
Ricardo Wurmus 1cbb07a8e4
gnu: Add r-desc.
* gnu/packages/statistics.scm (r-desc): New variable.
2017-04-06 14:39:10 +02:00
Ricardo Wurmus 67deeea41b
gnu: r-readr: Update to 1.1.0.
* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
2017-04-06 14:39:09 +02:00
Ricardo Wurmus 33eb555e6f
gnu: r-tibble: Update to 1.3.0.
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
2017-04-06 14:39:09 +02:00
Ricardo Wurmus aad7808526
gnu: r-jsonlite: Update to 1.3.
* gnu/packages/web.scm (r-jsonlite): Update to 1.3.
2017-04-06 14:39:09 +02:00
Ricardo Wurmus 538bce2472
gnu: ldc-bootstrap: Delete failing test.
* gnu/packages/ldc.scm (ldc-bootstrap)[arguments]: Delete failing test in
build phase.
2017-04-06 14:34:12 +02:00
Ludovic Courtès cb5be6df91
gnu: guile-aspell: Switch to Guile 2.2.
* gnu/packages/guile.scm (guile-aspell)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
2017-04-06 10:45:55 +02:00
Ludovic Courtès 7295087eb1
gnu: guile-aspell: Remove hard-coded "site/2.0" from $(guilesitedir).
* gnu/packages/guile.scm (guile-aspell)[arguments]: Remove
  #:configure-flags.  Add 'set-guilesitedir' phase.
2017-04-06 10:42:51 +02:00
Ludovic Courtès 234ea3d653
gnu: guile-aspell: Update to 0.4.
* gnu/packages/guile.scm (guile-aspell): Update to 0.4.
[arguments] <#:phases>: Adjust 'set-libaspell-file-name' to new source
tree layout.
2017-04-06 10:37:52 +02:00
Ludovic Courtès 79f912c710
Revert "gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'."
This reverts commit 01fe019166,
which was unneeded because IlmBase is already listed as 'Requires'
in 'OpenEXR.pc'.
2017-04-05 22:45:41 +02:00
Tobias Geerinckx-Rice b28187cd0c
Revert "gnu: bc: Update to 1.07."
This reverts commit dfee7daedb.  It causes
the linux-libre@4.9 build to hang (command-line usage works fine).
2017-04-05 21:23:41 +02:00
Kei Kebreau cd381c317b
gnu: Move audacity to audio.scm.
* gnu/packages/audacity.scm: Remove file and move audacity...
* gnu/packages/audio.scm: ...here.
* gnu/local.mk: Remove reference to removed file.
2017-04-05 15:08:14 -04:00
Ricardo Wurmus 1108a920bd
gnu: sra-tools: Fix glibc naming conflict.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Add build phase
"patch-away-glibc-conflict" to fix a definition conflict with glibc 2.25.
2017-04-05 18:06:51 +02:00
Ricardo Wurmus beebe43176
gnu: sra-tools: Use "modify-phases" syntax.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use "modify-phases"
syntax.
2017-04-05 18:06:51 +02:00
Ben Woodcroft fc5b12879f
gnu: diamond: Update to 0.8.37.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.37.
2017-04-05 22:49:01 +10:00
Thomas Danckaert 52b2d666ca
gnu: kdevelop: Update to 5.1.0.
* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.0.
2017-04-05 12:12:34 +02:00
Tobias Geerinckx-Rice dfee7daedb
gnu: bc: Update to 1.07.
* gnu/packages/algebra.scm (bc): Update to 1.07.
[native-inputs]: Add ed and texinfo.
[arguments]: Use default ‘configure’ phase.
2017-04-05 03:31:58 +02:00
Tobias Geerinckx-Rice f0bacad682
gnu: bc: Actually use readline.
* gnu/packages/algebra.scm (bc)[arguments]: Add ‘--with-readline’
to #:configure-flags.
2017-04-05 03:31:58 +02:00
Tobias Geerinckx-Rice 5894b60491
gnu: algebra: Re-order imports.
* gnu/packages/algebra.scm: Order imports alphabetically.
2017-04-05 03:31:58 +02:00
Ludovic Courtès 01fe019166
gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'.
* gnu/packages/graphics.scm (openexr)[arguments]: Add
'set-ilmbase-directory-in-pc-file' phase.
2017-04-05 00:53:03 +02:00
Clément Lassieur 8db947169f
gnu: icecat: Use bundled ICU to avoid crashes.
* gnu/packages/gnuzilla.scm (icecat)[arguments] <#:configure-flags>:
Temporarily comment out "--with-system-icu".
2017-04-04 20:18:38 +02:00
Clément Lassieur cca906754d
gnu: icecat: Re-enable parallel build.
* gnu/packages/gnuzilla.scm (icecat)[arguments]: Re-enable parallel build.
2017-04-04 20:18:38 +02:00
Marius Bakke 33b2520175
gnu: python-django: Specify CPE name.
* gnu/packages/django.scm (python-django, python2-django)[properties]: Add
"cpe-name".
2017-04-04 18:30:52 +02:00
Marius Bakke dcc9b6abc7
gnu: python-django: Update to 1.10.7 [fixes CVE-2017-7233 and CVE-2017-7234].
* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.7.
2017-04-04 18:01:32 +02:00
Marius Bakke 4dc12417d2
gnu: gnupg: Update to 2.1.20.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.20.
[source]: Remove patch.
* gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-04-04 17:46:28 +02:00
Marius Bakke a3dea99107
gnu: python2-cython: Fix build on 32-bit platforms.
* gnu/packages/python.scm (python-cython, python2-cython)[source]: Add patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-04-04 17:46:28 +02:00
Mark Meyer 6beaa5a02a
gnu: moc: Add Ogg Vorbis support.
* gnu/packages/music.scm (moc)[inputs]: Add libogg and libvorbis.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-04-04 15:16:25 +02:00
Mark Meyer 0d78e37746
gnu: Add qjackctl.
* gnu/packages/audio.scm (qjackctl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-04 14:30:00 +02:00
Ludovic Courtès b7506f74df
gnu: glog: Fix name demangling for GCC 5.
* gnu/packages/patches/glog-gcc-5-demangling.patch: New file.
* gnu/packages/logging.scm (glog)[sources]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-04-04 14:30:00 +02:00
Tobias Geerinckx-Rice f49ced6827
gnu: youtube-dl: Update to 2017.04.03.
* gnu/packages/video.scm (youtube-dl): Update to 2017.04.03.
2017-04-04 00:17:58 +02:00
Tobias Geerinckx-Rice f751b7596d
gnu: perl-email-simple: Update to 2.213.
* gnu/packages/mail.scm (perl-email-simple): Update to 2.213.
2017-04-04 00:17:58 +02:00
Tobias Geerinckx-Rice e26f2c67d6
gnu: perl-email-mime: Update to 1.940.
* gnu/packages/mail.scm (perl-email-mime): Update to 1.940.
2017-04-04 00:17:57 +02:00
Tobias Geerinckx-Rice 153ea992e8
gnu: perl-lingua-en-tagger: Update to 0.28.
* gnu/packages/language.scm (perl-lingua-en-tagger): Update to 0.28.
2017-04-04 00:17:29 +02:00
Tobias Geerinckx-Rice 5b5b4edfcc
gnu: perl-lingua-en-number-isordinal: Update to 0.05.
* gnu/packages/language.scm (perl-lingua-en-number-isordinal): Update to 0.05.
2017-04-04 00:17:29 +02:00
Tobias Geerinckx-Rice e2fb341f8f
gnu: perl-lingua-en-inflect-number: Update to 1.12.
* gnu/packages/language.scm (perl-lingua-en-inflect-number): Update to 1.12.
2017-04-04 00:17:29 +02:00
Tobias Geerinckx-Rice 3581c3571a
gnu: perl-lingua-en-inflect: Update to 1.901.
* gnu/packages/language.scm (perl-lingua-en-inflect): Update to 1.901.
2017-04-04 00:17:28 +02:00
Tobias Geerinckx-Rice 84f06e540c
gnu: perl-lingua-en-findnumber: Update to 1.32.
* gnu/packages/language.scm (perl-lingua-en-findnumber): Update to 1.32.
2017-04-04 00:17:28 +02:00
Tobias Geerinckx-Rice dd0cfb37da
gnu: perl-db-file: Update to 1.840.
* gnu/packages/databases.scm (perl-db-file): Update to 1.840.
2017-04-04 00:17:28 +02:00
Tobias Geerinckx-Rice 2273b75154
gnu: perl-dbd-sqlite: Update to 1.54.
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.54.
2017-04-04 00:17:28 +02:00
Tobias Geerinckx-Rice 4d40c6aab0
gnu: perl-dbd-pg: Update to 3.5.3.
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.5.3.
2017-04-04 00:17:28 +02:00
Muriithi Frederick Muriuki b98d4ec0aa
gnu: Add python-mando-0.3.1
* gnu/packages/python.scm (python-mando-0.3.1): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-04 00:10:00 +02:00
Thomas Danckaert b4dcfce51b
gnu: Add cifs-utils.
* gnu/packages/samba.scm (cifs-utils): New variable.
2017-04-03 21:45:53 +02:00
Marius Bakke 350a30845c
gnu: python-pexpect: Use python-pytest@3.0.
* gnu/packages/python.scm (python-pexpect, python2-pexpect)[native-inputs]:
Change PYTHON-PYTEST to PYTHON-PYTEST-3.0.
2017-04-03 19:25:57 +02:00
Marius Bakke 26bad5d7eb
gnu: nss, nss-certs: Update to 3.30.
* gnu/packages/gnuzilla.scm (nss): Update to 3.30.
* gnu/packages/certs.scm (nss-certs): Update to 3.30.
* gnu/packages/patches/nss-increase-test-timeout.patch: Adjust patch context.
2017-04-03 19:25:57 +02:00
Marius Bakke cd158a2b77
gnu: python-cython: Update to 0.25.2.
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.25.2.
2017-04-03 19:25:56 +02:00
Kei Kebreau 9a49129651
gnu: audacity: Update to 2.1.3.
* gnu/packages/audacity.scm (audacity): Update to 2.1.3.
[source]: Fetch gzipped tar archive instead of a zip archive; remove
unnecessary patch.
[native-inputs]: Add autoconf, automake and libtool.
[arguments]: Add autoreconf phase to detect system libraries.
* gnu/packages/patches/audacity-fix-ffmpeg-binding.patch: Delete patch.
* gnu/local.mk: Remove reference to removed patch.
2017-04-03 11:51:52 -04:00
Arun Isaac 568f977f9c
gnu: emacs-elfeed: Enable tests.
* gnu/packages/emacs.scm (emacs-elfeed)[arguments]: Add a 'check' phase.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-02 23:08:55 -04:00
Leo Famulari b53fa16f9c
gnu: brdf-explorer: Use HTTPS source URL.
* gnu/packages/graphics.scm (brdf-explorer)[source]: Use HTTPS URL.
2017-04-02 20:00:52 -04:00
Leo Famulari 7bf837fd43
gnu: Use HTTPS URLs for GitHub home-pages.
* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm,
gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm,
gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm,
gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm,
gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on
GitHub.
2017-04-02 20:00:51 -04:00
Leo Famulari 9167488490
gnu: jbig2dec: Fix CVE-2016-9601.
* gnu/packages/patches/jbig2dec-CVE-2016-9601.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (jbig2dec)[source]: Use it.
2017-04-02 19:38:56 -04:00
Ludovic Courtès 2a0d5de5a9
Merge branch 'core-updates' 2017-04-03 00:13:06 +02:00
Ludovic Courtès 245575eaf3
gnu: guile-git: Install .go files to /site-ccache.
* gnu/packages/guile.scm (guile-git)[arguments] <bootstrap>: Change
"/ccache" to "/site-ccache" in Makefile.am.
2017-04-03 00:12:51 +02:00
Marius Bakke 60f37e3cb1
gnu: sddm: Build without greenisland.
This Wayland compositor is currently abandonware and has known problems.

* gnu/packages/display-managers.scm (sddm)[inputs]: Remove GREENISLAND.
2017-04-02 23:42:56 +02:00
Ricardo Wurmus 41f6d18fb6
gnu: guitarix: Update to 0.35.3.
* gnu/packages/audio.scm (guitarix): Update to 0.35.3.
2017-04-02 18:30:42 +02:00
Kyle Meyer 6800c79701
gnu: notmuch: Update to 0.24.1.
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.24.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-04-02 11:58:08 +02:00
Ben Woodcroft cf1d581464
gnu: khmer: Build with gcc-4.
* gnu/packages/bioinformatics.scm (khmer)[inputs]: Add gcc-4.9.
2017-04-02 10:14:17 +10:00
Ben Woodcroft 800a7dd59e
gnu: ruby: Replace with ruby-2.3.4.
* gnu/packages/ruby.scm (ruby)[replacement]: New field.
(ruby-2.3.4): New variable.
2017-04-02 08:21:43 +10:00
Ben Woodcroft 22a494ec25
gnu: ruby-2.2: Update to 2.2.7.
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.7.
2017-04-02 08:20:41 +10:00
Ricardo Wurmus 750e54ecbe
gnu: tuxguitar: Update to 1.4.
* gnu/packages/music.scm (tuxguitar): Update to 1.4.
[arguments]: Replace build phase "build-editor-utils" with "build-libraries";
install resources to the expected locations.
2017-04-02 17:25:05 +02:00
Ricardo Wurmus 8723fe23fa
gnu: pd: Run autogen.sh script.
* gnu/packages/music.scm (pd)[arguments]: Run autogen.sh instead of
plain autoreconf.
2017-04-02 17:25:05 +02:00
Ricardo Wurmus 4712cbb0c7
gnu: pd: Fix indentation of phases.
* gnu/packages/music.scm (pd)[arguments]: Fix indentation.
2017-04-02 17:25:05 +02:00
Ricardo Wurmus 037bf4f4a0
gnu: pd: Update to 0.47-1.
* gnu/packages/music.scm (pd): Update to 0.47-1.
2017-04-02 17:25:05 +02:00
Ricardo Wurmus f9b8b54e62
gnu: tuxguitar: Update home page URL.
* gnu/packages/music.scm (tuxguitar)[home-page]: Update URL.
2017-04-02 17:25:05 +02:00
Ricardo Wurmus 8dbc5d2368
gnu: setbfree: Update to 0.8.4
* gnu/packages/music.scm (setbfree): Update to 0.8.4.
2017-04-02 17:25:05 +02:00
Ricardo Wurmus 7175f4c2c1
gnu: amsynth: Build with LASH support.
* gnu/packages/music.scm (amsynth)[inputs]: Add lash.
2017-04-02 17:25:04 +02:00
Ricardo Wurmus 7e0befd45e
gnu: amsynth: Update to 1.7.1.
* gnu/packages/music.scm (amsynth): Update to 1.7.1.
[native-inputs]: Add intltool.
2017-04-02 17:25:04 +02:00
Ricardo Wurmus 14fa5bde7e
gnu: samplv1: Update to 0.8.1.
* gnu/packages/music.scm (samplv1): Update to 0.8.1.
2017-04-02 17:25:04 +02:00
Ricardo Wurmus 17ca1a39a6
gnu: drumkv1: Update to 0.8.1.
* gnu/packages/music.scm (drumkv1): Update to 0.8.1.
2017-04-02 17:25:04 +02:00
Ricardo Wurmus 720de58bf7
gnu: synthv1: Update to 0.8.1.
* gnu/packages/music.scm (synthv1): Update to 0.8.1.
2017-04-02 17:25:04 +02:00
Ricardo Wurmus 5feac7b04e
gnu: non-sequencer, non-session-manager: Update to 1.9.5-3.10c31e5.
* gnu/packages/music.scm (non-sequencer, non-session-manager): Update to
1.9.5-3.10c31e5.
2017-04-02 17:25:04 +02:00
Ricardo Wurmus 57f1b3b8e7
gnu: lilypond: Update to 2.19.58.
* gnu/packages/music.scm (lilypond): Update to 2.19.58.
2017-04-02 17:25:03 +02:00
Ricardo Wurmus 95708ed8d6
gnu: extempore: Update home page.
* gnu/packages/music.scm (extempore)[home-page]: Use new home page.
2017-04-02 17:25:03 +02:00
Ricardo Wurmus 0a1513513a
gnu: aria-maestosa: Update to 1.4.13.
* gnu/packages/music.scm (aria-maestosa): Update to 1.4.13.
2017-04-02 17:25:03 +02:00
Tobias Geerinckx-Rice 7f661d4909
gnu: btrfs-progs: Update to 4.10.2.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.2.
2017-04-01 16:13:02 +02:00
Ricardo Wurmus 7070088a2d
gnu: yoshimi: Update to 1.5.1.
* gnu/packages/music.scm (yoshimi): Update to 1.5.1.
2017-04-02 11:37:11 +02:00
Mark H Weaver bacc1d26c6
gnu: linux-libre: Update to 4.10.8 [fixes CVE-2017-7184].
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.8.
(%linux-libre-hash): Update hash.
2017-03-31 18:20:54 -04:00
Mark H Weaver 9554e5ae15
gnu: linux-libre@4.9: Update to 4.9.20 [fixes CVE-2017-7184].
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.20.
2017-03-31 18:20:20 -04:00
Mark H Weaver 232be5bcd7
gnu: linux-libre@4.4: Update to 4.4.59 [fixes CVE-2017-7184].
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.59.
2017-03-31 18:19:13 -04:00
David Thompson 4299409018
gnu: guile-opengl: Build with Guile 2.2.
* gnu/packages/gl.scm (guile-opengl): Build with Guile 2.2.
2017-03-31 13:35:20 -04:00
Tobias Geerinckx-Rice b5b46f87bd
gnu: libtermkey: Update to 0.20.
gnu/packages/terminals.scm (libtermkey): Update to 0.20.
2017-03-31 15:33:16 +02:00
Tobias Geerinckx-Rice 32ea65370e
gnu: xonsh: Update to 0.5.9.
* gnu/packages/shells.scm (xonsh): Update to 0.5.9.
2017-03-31 15:33:15 +02:00
Tobias Geerinckx-Rice a20d28bb7c
gnu: parallel: Update to 20170322.
* gnu/packages/parallel.scm (parallel): Update to 20170322.
2017-03-31 15:33:15 +02:00
David Thompson 80e138750d
gnu: tiled: Update to 0.18.2.
* gnu/packages/game-development.scm (tiled): Update to 0.18.2.
2017-03-31 09:25:51 -04:00
Efraim Flashner 823354b2a8
gnu: nano: Update to 2.8.0.
* gnu/packages/nano.scm (nano): Update to 2.8.0.
2017-03-31 16:08:04 +03:00
Tobias Geerinckx-Rice ec23833267
gnu: hdparm: Use ‘modify-phases’ syntax.
* gnu/packages/linux.scm (hdparm): Use ‘modify-phases’.
2017-03-31 04:06:08 +02:00
Tobias Geerinckx-Rice 02052b2c9b
gnu: hdparm: Expand synopsis and description.
* gnu/packages/linux.scm (hdparm)[synopsis, description]: Add some more
common uses, more examples, and more objective information.
2017-03-31 04:06:08 +02:00
Tobias Geerinckx-Rice 0bea8ebe20
gnu: hdparm: Update to 9.51.
* gnu/packages/linux.scm (hdparm): Update to 9.51.
2017-03-31 04:06:08 +02:00
Tobias Geerinckx-Rice 8e320dea30
gnu: goffice: Update to 0.10.34.
* gnu/packages/gnome.scm (goffice): Update to 0.10.34.
2017-03-31 04:06:07 +02:00
Tobias Geerinckx-Rice 5ecd671731
gnu: gmime: Update to 2.6.23.
* gnu/packages/mail.scm (gmime): Update to 2.6.23.
2017-03-31 04:06:06 +02:00
Efraim Flashner 4fbed7494d
gnu: rapidjson: Fix building on aarch64.
* gnu/packages/web.scm (rapidjson)[arguments]: Add custom phase for
aarch64 to fix -march detection.
2017-03-31 01:05:28 +03:00
Tobias Geerinckx-Rice 3c2b833334
gnu: freedoom: Update to 0.11.2.
* gnu/packages/games.scm (freedoom): Update to 0.11.2.
2017-03-30 23:52:17 +02:00
Ludovic Courtès dca96ad395
gnu: mlocate: Update URLs.
* gnu/packages/search.scm (mlocate)[source, home-page]: Change URLs to
pagure.{org,io}.
2017-03-30 23:40:22 +02:00
Ludovic Courtès 402b03e620
gnu: ruby-concurrent: Work around test failure on ARM.
* gnu/packages/patches/ruby-concurrent-test-arm.patch: New file.
* gnu/packages/ruby.scm (ruby-concurrent)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-30 23:40:20 +02:00
Ludovic Courtès aef81a81b8
gnu: guix: Include the aarch64 bootstrap Guile.
* gnu/packages/package-management.scm (boot-guile-uri): Add case for aarch64.
(guix-0.12.0)[arguments] <copy-bootstrap-guile>: Handle aarch64.
[inputs]: Add "boot-guile/aarch64".
2017-03-30 23:40:17 +02:00
Leo Famulari 7044301381
gnu: sysstat: Update to 11.4.3.
* gnu/packages/linux.scm (sysstat): Update to 11.4.3.
2017-03-30 17:09:29 -04:00