Commit Graph

217 Commits

Author SHA1 Message Date
Ricardo Wurmus 0ebef06dbe
build-system/r: Update to Bioconductor 3.7.
This is a follow-up to 41f17554d8.

* guix/build-system/r.scm (bioconductor-uri): Update to version 3.7.
2018-06-05 09:58:52 +02:00
Danny Milosavljevic b87fc9ab9d
gnu: android-make-stub: Update to 0.6.0.
* gnu/packages/android.scm (android-make-stub): Update to 0.6.0.
* guix/build-system/android-ndk.scm (android-ndk-build): Modify.
(lower): Modify.
2018-05-10 15:35:28 +02:00
Danny Milosavljevic c6ee92c41b
gnu: Add android-googletest.
* gnu/packages/android.scm (android-googletest): New variable.
* guix/build-system/android-ndk.scm (android-ndk-build): Use it.
2018-05-10 02:12:03 +02:00
Danny Milosavljevic 9ed36cd3d6
build-system: android-ndk: Support unit tests.
* guix/build-system/android-ndk.scm (android-ndk-build): Add googletest.
* guix/build/android-ndk-build-system.scm (check): Check whether tests are
enabled.  Run root-level tests as well.
2018-05-10 01:06:22 +02:00
Danny Milosavljevic 436515cdb8
build: Add the Android NDK build-system.
* guix/build-system/android-ndk.scm: New file.
* guix/build/android-ndk-build-system.scm: New file.
* Makefile.am: Add them.
2018-05-09 19:16:04 +02:00
Maxim Cournoyer facc0a96a1
build-system: emacs: Add improved check phase.
* guix/build-system/emacs.scm (emacs-build): Add #:test-command keyword
argument. Remove #:configure-flags and #:test-target keyword arguments.
* guix/build/emacs-build-system.scm (check): New procedure.
(%standard-phases): Register check phase after the build phase.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 00:49:53 +05:30
Nikolai Merinov f342bb58fe
gnu: rust: Update rust to 1.24.1.
* gnu/packages/rust.scm (rust-bootstrap): Freeze bootstrap version to 1.22.1.
Reorganize bootstrap binaries to match new "rust" package structure with two
ouputs "out" with Rust compiler and "cargo" with Cargo package manager.
Replace all "system*" by "invoke".
(rust-1.23): Rename "rustc" to "rust".  Update sha256 for tarball.  Add cargo
related dependencies.  Install "cargo" as separate "rust" output.  Remove
substitutes for parts that were fixed in "rustc" source code.  Install
documentation to separate "doc" output.  Update configuration according to
changes in "rustc" source code.  Replace all "system*" by "invoke".
(rust): Create package for 1.24.1 rust release based on rust-1.23 release.
* guix/build-system/cargo.scm (default-rust): Replace "default-cargo" and
"default-rustc" functions with "default-rust" function.
(cargo-build-system): Take only one package as "rust" source.  Use "rustc" of
default output of "rust" package, use "cargo" as "cargo" output of "rust"
package.
2018-03-30 15:46:53 +02:00
Marius Bakke 061f204dcd
Revert "build-system/meson: Use 'target-arm32?' for armhf-linux case."
This requires adding (guix utils) to the build inputs, and causes too many
rebuilds for now.

This reverts commit 24a2e9172a.
2018-03-20 00:06:50 +01:00
Efraim Flashner 24a2e9172a
build-system/meson: Use 'target-arm32?' for armhf-linux case.
* guix/build-system/meson.scm (lower, meson-build): Replace armhf-linux
detection with 'target-arm32?' macro.
2018-03-19 22:07:37 +02:00
Marius Bakke 7ace97395f
Merge branch 'master' into staging 2018-03-18 01:09:25 +01:00
Marius Bakke d5b5a15a40
build-system/meson: Skip the 'fix-runpath' phase on armhf.
* guix/build-system/meson.scm (lower): Remove DEFAULT-PATCHELF from inputs
on armhf.
(meson-build): Ignore the 'fix-runpath' phase when building for arm systems.
2018-03-12 17:27:07 +01:00
Ricardo Wurmus ad1d03fcf0
build-system: minify: Do not import (ice-9 popen) in the build environment.
The (ice-9 popen) module should not be added to the imported-modules here,
because that depends on the Guile that is used on the host side.

* guix/build-system/minify.scm (%minify-build-system-modules): Remove import
of (ice-9 popen).
2018-03-12 15:14:01 +01:00
Ludovic Courtès 297602513b
build-system/trivial: Add support for #:allowed-references.
* guix/build-system/trivial.scm (lower): Add #:allowed-references and
keep it in the 'arguments' field.
(trivial-build): Add #:allowed-references.  Add
'canonicalize-reference'.  Pass #:allowed-references to
'build-expression->derivation'.
(trivial-cross-build): Likewise.
* tests/packages.scm ("trivial with #:allowed-references"): New test.
2018-02-28 22:47:42 +01:00
Mark H Weaver efe2a2833c
Merge branch 'master' into core-updates 2018-02-09 01:46:34 -05:00
Maxim Cournoyer 58b6812fd4
emacs-build-system: Reinstate the check phase.
* guix/build/emacs-build-system.scm (%standard-phases): Reinstate the check
phase from the gnu-build-system.
* guix/build-system/emacs.scm (emacs-build)[tests?]: But do not enable it by default.
[parallel-tests?]: Add argument.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-02-05 16:54:27 +01:00
Danny Milosavljevic d1a08062c6
build-system/glib-or-gtk: Don't generate 'icon-theme.cache'.
* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Don't generate
'icon-theme.cache'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-01-01 18:09:05 +01:00
Ludovic Courtès d2b5ede053
build-system/gnu: Check whether the cross-libc has a "static" output.
This is a followup to 614fffe427, which
broke cross-compilation to i686-w64-mingw32.

* guix/build-system/gnu.scm (standard-cross-packages): Add
"cross-libc:static" only when LIBC has a "static" output.
2017-12-21 10:46:24 +01:00
Ludovic Courtès 614fffe427
build-system/gnu: Add the "static" output of libc in cross environments.
Fixes a regression whereby the host libc.a would be missing when
cross-compiling.

This is a followup to commit 6dff905e51.

* guix/build-system/gnu.scm (standard-cross-packages): Add the
"cross-libc:static".
2017-12-20 14:56:47 +01:00
Marius Bakke 32cd878be0
Merge branch 'master' into core-updates 2017-12-19 01:42:40 +01:00
Ludovic Courtès 8bc1935c7c
build-system/asdf: Use 'mlambda'.
* guix/build-system/asdf.scm (package-with-build-system): Use 'mlambda'
instead of 'memoize'.
2017-12-10 23:44:58 +01:00
Marius Bakke 77181815ae
Merge branch 'master' into core-updates 2017-12-05 23:41:30 +01:00
Arun Isaac 3d0aa7f70b
build-system: Add scons-build-system.
* guix/build-system/scons.scm: New file.
* guix/build/scons-build-system.scm: New file.
* Makefile.am (MODULES): Register them.
* doc/guix.texi (Build Systems): Add scons-build-system.
2017-11-30 18:19:31 +05:30
Marius Bakke 2dd12924cf
Merge branch 'master' into core-updates 2017-11-19 15:01:00 +01:00
Leo Famulari d8e257113c
build-system/go: Don't let Go executables refer to the Go compiler.
* guix/build/go-build-system.scm (remove-store-reference, remove-go-references):
New procedures.
(%standard-phases): Add 'remove-go-references' phase.
* guix/build-system/go.scm (go-build): Add allow-go-reference? key.
2017-11-17 18:25:20 -05:00
Ludovic Courtès a864d56302
build-system/gnu: Add 'install-license-files' phase.
Suggested by Dave Love <fx@gnu.org>.

* guix/build-system/gnu.scm (%license-file-regexp): New variable.
(gnu-build): Add #:license-file-regexp and use it.
(gnu-cross-build): Likewise.
* guix/build/gnu-build-system.scm (%license-file-regexp): New variable.
(install-license-files): New procedure.
(%standard-phases): Add it.
2017-11-08 22:43:56 +01:00
Ricardo Wurmus 25e51b1c45
guix: Add archive support for bioconductor-uri.
* guix/build-system/r.scm (bioconductor-uri): Also return the archive URL.
* guix/import/cran.scm (latest-bioconductor-release, fetch-description):
Adjust because bioconductor-uri now returns a list.
2017-11-07 08:14:09 +01:00
Leo Famulari c10851cf91
build-system/go: Parameterize installing the source code.
* guix/build-system/go.scm (go-build): Add install-source? key.
* guix/build/go-build-system.scm (install-source): Check if
install-source? is true.
2017-10-24 13:10:34 -04:00
Tobias Geerinckx-Rice 5713bbf157
Use HTTPS for bioconductor.org.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
Leo Famulari 91525b486c
build: Add the Go build system.
* guix/build-system/go.scm,
guix/build/go-build-system.scm: New files.
* Makefile.am (MODULES): Add new files.
* doc/guix.texi (Build Systems): Document the go-build-system.
2017-10-12 21:22:40 -04:00
Julien Lepiller f403d7abdf
guix: ant-build-system: Add #:test-include and #:test-exclude arguments.
* guix/build-system/ant.scm: Add #:test-include and #:test-exclude
arguments.
* guix/build/ant-build-system.scm: Generate test list from arguments.
* doc/guix.texi (Build Systems): Document it.
2017-10-03 21:38:23 +02:00
Julien Lepiller 8df1faa047
guix: ant-build-system: Add main-class support.
* guix/build-system/ant.scm: New #:main-class argument
* guix/build/ant-build-system.scm: Generate a manifest file with
additional properties.
* doc/guix.texi (Build Systems): Document it.
2017-10-03 21:37:47 +02:00
Mohammed Sadiq ea1cd554cc
build-system: meson: Fix typo in variable name.
* guix/build-system/meson.scm (lower): fix typo in glib-or-gtk?.
2017-09-26 19:58:26 +02:00
Peter Mikkelsen 07c101e221
build-system: Add 'meson-build-system'.
* Makefile.am (MODULES): Add 'guix/build-system/meson.scm' and
'guix/build/meson-build-system.scm'.
* guix/build-system/meson.scm: New file.
* guix/build/meson-build-system.scm: New file.
* doc/guix.texi (Build Systems): Add 'meson-build-system'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-16 18:07:00 +02:00
Mark H Weaver f167595ba1
Merge branch 'master' into core-updates 2017-08-06 00:23:20 -04:00
Ricardo Wurmus 88c8f247e5
build: Add minify build system.
* guix/build-system/minify.scm: New file.
* guix/build/minify-build-system: New file.
* Makefile.am (MODULES): Add new files.
* doc/guix.texi (Build Systems): Document minify-build-system.
2017-08-04 11:23:52 +02:00
Leo Famulari c8eb2b8c60
Merge branch 'master' into core-updates 2017-07-10 14:37:53 -04:00
Ricardo Wurmus bb3b35975c
build-system: texlive: Build union in configure phase.
This allows us to use texmf.cnf instead of having to set all required
environment variables manually.

* guix/build/texlive-build-system.scm (configure): New procedure.
(build): Simplify.
(%standard-phases): Add configure phase.
* guix/build-system/texlive.scm (texlive-build): Include (guix build union) in
modules.
(%texlive-build-system-modules): Likewise.
2017-07-09 17:07:27 +02:00
Mark H Weaver ed068b960e
Merge branch 'master' into core-updates 2017-06-26 00:00:58 -04:00
Arun Isaac 148585c240
gnu: Move contents of zip module into compression module.
* gnu/packages/zip.scm (zip, unzip, zziplib, perl-zip): Move to...
* gnu/packages/compression.scm: ...here.
* gnu/packages/zip.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Unregister deleted file.
* po/packages/POTFILES.in: Unregister deleted file.
* gnu/packages/{audio, avr, bioinformatics, busybox, cdrom, ci, compression,
docbook, documentation, fonts, fpga, game-development, games, gl, gnome,
gnuzilla, graphics, guile, haskell, image, java, kodi, ldc, libreoffice,
markup, maths, mc, monitoring, music, php, pretty-print, python, scheme,
smalltalk, statistics, synergy, tex, textutils, video, web-browsers, xml,
zip}.scm, guix/build-system/{ant, font}.scm, guix/{download, packages}.scm:
Adapt module import.
2017-06-20 18:10:35 +05:30
Mark H Weaver 9815739e9b
Merge branch 'master' into core-updates 2017-06-20 00:25:59 -04:00
Ricardo Wurmus 00f037ca44
build-system/texlive: Update to texlive-2017.1, revision 44591.
* guix/build-system/texlive.scm (%texlive-tag): Change to texlive-2017.1.
(%texlive-revision): Change to 44591.
2017-06-19 08:22:04 +02:00
Mark H Weaver 9d4385634d
Merge branch 'master' into core-updates 2017-06-18 02:36:51 -04:00
Ricardo Wurmus 205794c868
build-system: Add 'texlive-build-system'.
* guix/build-system/texlive.scm: New file.
* guix/build/texlive-build-system.scm: New file.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document it.
* gnu/packages/tex.scm (%texlive-tag, %texlive-revision): Remove variables.
(texlife-ref): Remove procedure.
2017-06-15 17:03:16 +02:00
Marius Bakke ea45e2c500
Merge branch 'master' into core-updates 2017-06-10 02:57:50 +02:00
Maxim Cournoyer df34f47894
build-system: emacs: Factorize include/exclude default arguments.
The `install' phase of the emacs-build-system contained default arguments
duplicated from the host side `emacs-build' procedure. This change factorizes
them so that:

1. They are not duplicated.
2. They can be reused and extended easily when defining emacs packages.

* guix/build/emacs-build-system.scm (%default-include, %default-exclude): New
  variables.
(install): Use %default-include and %default-exclude as default arguments.
* guix/build-system/emacs.scm: Use and re-export %default-include,
%default-exclude from (guix build emacs-build-system).
(emacs-build): Use %default-include and %default-exclude as default arguments.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-06-08 19:45:27 +05:30
Marius Bakke d0c45d2d82
Merge branch 'master' into core-updates
Conflicts:
	gnu/packages/image.scm
        (incorporated libtiff graft)
2017-06-03 17:51:21 +02:00
Ricardo Wurmus d2ac5e2975
build-system/cmake: Add support for cross compilation.
Fixes <https://bugs.gnu.org/26897>.

* guix/build-system/gnu.scm: Export standard-cross-packages.
* guix/build-system/cmake.scm (cmake-cross-build): New procedure.
(lower): Add support for cross-builds.
* guix/build/cmake-build-system.scm (configure): Handle "target" argument.
2017-05-30 16:52:55 +02:00
Arun Isaac 3d90fa982b
build-system: Add 'font-build-system'.
* Makefile.am (MODULES): Add 'guix/build-system/font.scm' and
  'guix/build/font-build-system.scm'.
* guix/build-system/font.scm: New file.
* guix/build/font-build-system.scm: New file.
* doc/guix.texi (Build Systems): Add 'font-build-system'.
2017-05-28 19:30:05 +05:30
Ricardo Wurmus 3a62dd6b22
build-system: gnu: Fix cross-gcc call.
This is a follow-up to 7b3318e34f.

* guix/build-system/gnu.scm (standard-cross-packages): Use keyword arguments
in cross-gcc call.
2017-05-25 17:02:08 +02:00
Arun Isaac d879685176
build-system: emacs: Install only a subset of files.
* guix/build/emacs-build-system.scm (install): Install files matching
  #:include while excluding files matching #:exclude.
* guix/build-system/emacs.scm (emacs-build): Add keyword arguments #:include
  and #:exclude.
2017-05-23 06:12:43 +05:30