Commit Graph

22666 Commits

Author SHA1 Message Date
Ricardo Wurmus fd40857938
gnu: r-bsgenome-hsapiens-ucsc-hg19: Update hash.
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Update hash because the tarball changed in place.
2017-07-19 14:39:37 +02:00
Ricardo Wurmus 1fb9b6782b
gnu: snakemake: Update to 3.13.3.
* gnu/packages/python.scm (snakemake): Update to 3.13.3.
2017-07-19 14:39:37 +02:00
Ricardo Wurmus 688fbf572e
gnu: guitarix: Update to 0.35.5.
* gnu/packages/audio.scm (guitarix): Update to 0.35.5.
2017-07-19 14:39:37 +02:00
Efraim Flashner 2324541bd0
gnu: sortmerna: Limit support to x86_64 and i686 only.
* gnu/packages/bioinformatics.scm (sortmerna)[supported-systems]: New field.
2017-07-19 14:37:47 +03:00
Ludovic Courtès a388c951dd
gnu: totem: Do not build static libraries.
* gnu/packages/gnome.scm (totem)[arguments]: Pass "--disable-static".
This reduces the size of Totem from 11 MiB to 9 MiB.
2017-07-19 11:33:02 +02:00
Tobias Geerinckx-Rice 644e5f17df
download: Add OpenBSD mirrors.
* guix/download.scm (%mirrors) <openbsd>: Add HTTPS OpenBSD mirrors.
* gnu/packages/ntp.scm (openntpd)[source]: Use them.
* gnu/packages/ssh.scm (openssh)[source]: Likewise.
* gnu/packages/tls.scm (libressl)[source]: Likewise.
2017-07-19 01:42:08 +02:00
Tobias Geerinckx-Rice b225b1bec2
gnu: openntpd: Update to 6.1p1.
* gnu/packages/ntp.scm (openntpd): Update to 6.1p1.
2017-07-19 01:06:55 +02:00
Tobias Geerinckx-Rice c48fa0ad32
gnu: tlp: Update to 1.0.
* gnu/packages/linux.scm (tlp): Update to 1.0.
2017-07-19 01:06:54 +02:00
Tobias Geerinckx-Rice 137a330988
gnu: meson: Update to 0.41.1.
* gnu/packages/build-tools.scm (meson) Update to 0.41.1.
2017-07-19 01:06:54 +02:00
Ludovic Courtès ec5c24f9a8
gnu: totem: Disable automatic plugin installation.
* gnu/packages/gnome.scm (totem)[arguments]: Add #:configure-flags.
2017-07-18 22:46:47 +02:00
Ludovic Courtès 5058bf5684
guix system: Use "image.iso" as the name of ISO images.
* guix/scripts/system.scm (system-derivation-for-action): Pass #:name to
'system-disk-image'.
2017-07-18 21:41:35 +02:00
Ludovic Courtès 8d033e3e16
vm: 'iso9660-image' produces a single-file output.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Add
  #:single-file-output? and pass it to 'load-in-linux-vm'.
(iso9660-image): Pass #:single-file-output? to
'expression->derivation-in-linux-vm'.
* gnu/build/vm.scm (load-in-linux-vm): Add #:single-file-output? and
honor it.
2017-07-18 21:41:35 +02:00
Jelle Licht 45c18f8529
gnu: node: Add search path specification for 'NODE_PATH'.
* gnu/packages/node.scm (node)[native-search-paths]: New field.
2017-07-18 17:49:02 +02:00
Tobias Geerinckx-Rice 21ffcd65c5
vm: Increase disk size overhead estimate.
* gnu/build/vm.scm (estimated-partition-size): Add 25% to the graph size.
2017-07-18 17:14:38 +02:00
Tobias Geerinckx-Rice e333efd53a
gnu: libstaroffice: Update to 0.0.4.
* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.4.
2017-07-18 17:14:38 +02:00
宋文武 852241eb7d
system: Add 'newuidmap' and 'newgidmap' to %SETUID-PROGRAMS.
* gnu/system.scm (%setuid-programs): Add 'newuidmap' and 'newgidmap'.
2017-07-18 22:16:08 +08:00
宋文武 172b3e2cc2
services: sysctl: Fix typo.
* gnu/services/sysctl.scm: Fix typo of 'make-sysctl-configuration'.
2017-07-18 20:16:03 +08:00
Tobias Geerinckx-Rice e4e525096b
gnu: moka-icon-theme: Update to 5.3.6.
* gnu/packages/gnome.scm (moka-icon-theme): Update to 5.3.6.
2017-07-18 13:46:23 +02:00
Tobias Geerinckx-Rice 29ddf4b6e8
gnu: edi: Update to 0.5.1.
* gnu/packages/enlightenment.scm (edi): Update to 0.5.1.
2017-07-18 13:46:23 +02:00
Ricardo Wurmus 84de27c83b
gnu: enblend-enfuse: Use texlive-tiny.
* gnu/packages/photo.scm (enblend-enfuse)[native-inputs]: Replace
texlive-minimal with texlive-tiny.
2017-07-18 10:00:51 +02:00
Ricardo Wurmus 9840b8faaf
gnu: c-toxcore: Update to 0.1.9.
* gnu/packages/messaging.scm (c-toxcore): Update to 0.1.9.
[build-system]: Switch to cmake-build-system.
[native-inputs]: Remove autoconf, automake, libtool, and check.
[inputs]: Rename to...
[propagated-inputs]: ...this.
[arguments]: Remove field.
2017-07-18 09:58:56 +02:00
ng0 8b5bf30804
gnu: Rename (gnu packages gforth) to (gnu packages forth).
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename gforth.scm to forth.scm.
* gnu/packages/gforth.scm: Rename file to forth.scm.
* gnu/packages/forth.scm: Renamed from gforth.scm.
2017-07-18 09:58:56 +02:00
Ricardo Wurmus 8b89c1717c
gnu: python-numpy-documentation: Use texlive-union.
* gnu/packages/python.scm (python-numpy-documentation)[native-inputs]: Replace
"texlive" with a texlive-union.
2017-07-18 09:58:56 +02:00
Efraim Flashner 2805f9b2a0
gnu: raxml: Limit to x86_64 and i686 only.
* gnu/packages/bioinformatics.scm (raxml)[supported-systems]: New field.
2017-07-18 09:00:10 +03:00
Leo Famulari 4c4485f304
gnu: qemu: Fix CVE-2017-11334.
* gnu/packages/patches/qemu-CVE-2017-11334.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
2017-07-17 23:47:03 -04:00
Leo Famulari 144c8db9bd
gnu: chicken: Fix CVE-2017-11343.
* gnu/packages/patches/chicken-CVE-2017-11343.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
2017-07-17 23:47:00 -04:00
Marius Bakke 27305769de
gnu: python-cryptograpy: Update to 2.0.
* gnu/packages/python.scm (python-cryptography-vectors,
python2-cryptography-vectors, python-cryptography, python2-cryptography):
Update to 2.0.
2017-07-18 01:31:10 +02:00
Marius Bakke b77cc624ec
gnu: orc: Update to 0.4.27.
* gnu/packages/gstreamer.scm (orc): Update to 0.4.27.
2017-07-18 01:30:16 +02:00
Leo Famulari 867baed07f
gnu: imagemagick: Update to 6.9.9-0.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-0.
2017-07-17 18:20:51 -04:00
Ludovic Courtès b19a49d015
locale: Demonadify the locale creation API.
* gnu/system/locale.scm (single-locale-directory): Use 'computed-file'
instead of 'gexp->derivation'.
(locale-directory): Adjust accordingly and do the same.
* gnu/system.scm (operating-system-directory-base-entries): Adjust
accordingly.
2017-07-17 23:41:36 +02:00
Ludovic Courtès 6d833b13b7
gnu: Remove glibc@2.21 and its traces.
* gnu/packages/base.scm (glibc-2.21): Remove.
* gnu/system/locale.scm (localedef-command)[maybe-version-directory]:
Remove.  Replace call with use of 'package-version'.
(single-locale-directory): Remove 'version>=' conditional.
2017-07-17 23:41:36 +02:00
Ludovic Courtès 578dfbe07b
gexp: 'ungexp-splicing' properly accounts for nested native inputs.
Previously, (gexp-native-inputs #~#$@(list #~#+foo)) would return '().

This is a followup to 5b14a7902c.

* guix/gexp.scm (gexp-inputs)[add-reference-inputs]: In the list case,
remove 'if' around 'fold-right'.  In 'map' lambda, always inherit N?.
* tests/gexp.scm ("gexp list splicing + ungexp-splicing"): New test.
2017-07-17 23:41:36 +02:00
Efraim Flashner 1cbcbc8600
gnu: screen: Update to 4.6.1.
* gnu/packages/screen.scm (screen): Update to 4.6.1.
2017-07-17 22:35:06 +03:00
Tobias Geerinckx-Rice 0862b95433
build, vm: Use a less common label.
* gnu/build/vm.scm (initialize-hard-disk): Use "GuixSD_image" as label.
* gnu/system/install.scm (installation-os): Likewise.
* gnu/system/vm.scm (system-disk-image): Likewise.
2017-07-17 20:20:24 +02:00
Alex Vong 70e7367df1
gnu: emacs-ahungry-theme: Upgrade to 1.4.0.
* gnu/packages/emacs.scm (emacs-ahungry-theme): Upgrade to 1.4.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-17 12:06:39 -04:00
Leo Famulari da20c38f35
gnu: dash: Use the release tarball.
* gnu/packages/shells.scm (dash)[source]: Use the release tarball
instead of a Git checkout.
[native-inputs]: Remove field.
[arguments]: Remove 'bootstrap' phase.
2017-07-17 11:48:46 -04:00
Feng Shu 371ca85f52
gnu: font-wqy-zenhei: Use 'font-build-system'.
* gnu/packages/fonts.scm (font-wqy-zenhei): Switch to font-build-system.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-17 15:13:41 +02:00
Feng Shu 7fc6ce46f9
gnu: font-wqy-microhei: Use 'font-build-system'.
* gnu/packages/fonts.scm (font-wqy-microhei): Switch to font-build-system.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-17 15:13:41 +02:00
Andy Patterson 9b7ee28d57
gnu: Add Poly/ML.
* gnu/packages/sml.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-17 15:13:41 +02:00
Jan Nieuwenhuizen 2e009ae7cd
daemon: Flush the sink upon 'exportPath' errors.
Prior to this change, errors such as wrong permissions on
/etc/guix/signing-key.sec would give:

  guix-daemon: nix/libutil/serialise.cc:15: virtual nix::BufferedSink::~BufferedSink(): Assertion `!bufPos' failed.

This patch correctly propagates the error to the client and thus changes
that to:

  error: build failed: file `/etc/guix/signing-key.sec' should be secret (inaccessible to everybody else)!

* nix/nix-daemon/nix-daemon.cc (performOp): Wrap 'exportPath' call in
'try' block.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-07-17 15:13:41 +02:00
Efraim Flashner 7ad2a4f1d5
gnu: supertuxkart: Fix build on aarch64.
* gnu/packages/games.scm (supertuxkart)[source]: Add patch.
* gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-07-17 15:29:56 +03:00
Ricardo Wurmus 5beecc320e
gnu: Add sooperlooper.
* gnu/packages/patches/sooperlooper-build-with-wx-30.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/music.scm (sooperlooper): New variable.
2017-07-17 14:01:47 +02:00
Ricardo Wurmus c58d1b5f55
gnu: texlive-union: Silence union-build.
* gnu/packages/tex.scm (texlive-union)[arguments]: Suppress the output of
"union-build".
2017-07-17 14:01:47 +02:00
Ricardo Wurmus 274e3d4f3e
gnu: Add texlive-latex-type1cm.
* gnu/packages/tex.scm (texlive-latex-type1cm): New variable.
2017-07-17 14:01:47 +02:00
Ricardo Wurmus 1b10d49405
gnu: Add texlive-fonts-txfonts.
* gnu/packages/tex.scm (texlive-fonts-txfonts): New variable.
2017-07-17 14:01:47 +02:00
Ricardo Wurmus 245f1f31e8
gnu: Add texlive-latex-enumitem.
* gnu/packages/tex.scm (texlive-latex-enumitem): New variable.
2017-07-17 14:01:47 +02:00
Ricardo Wurmus 4701946775
gnu: texlive-dvips: Install font maps.
* gnu/packages/tex.scm (texlive-dvips)[native-inputs]: Add dvips-font-maps and
dvips-base-enc.
[arguments]: Install them.
2017-07-17 14:01:46 +02:00
Ricardo Wurmus 263d0c829e
gnu: texlive-union: Add texlive-fontname to defaults.
* gnu/packages/tex.scm (texlive-union): Add texlive-fontname to the default
packages
2017-07-17 14:01:46 +02:00
Ricardo Wurmus dea67d8afe
gnu: Add texlive-fontname.
* gnu/packages/tex.scm (texlive-fontname): New variable.
2017-07-17 14:01:46 +02:00
Ricardo Wurmus 2584beaedd
gnu: python-ipython: Use texlive-union.
* gnu/packages/python.scm (python-ipython)[native-inputs]: Replace "texlive"
with a texlive-union.
2017-07-17 14:01:46 +02:00