cc294bcee6
Merge branch 'master' into core-updates
2017-08-09 17:25:31 -04:00
ae7f246cf1
gnu: python-nbformat: Update to 4.3.0.
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* gnu/packages/python.scm (python-nbformat, python2-nbformat): Update to 4.3.0.
2017-08-09 16:52:51 -04:00
df851f5a91
download: Add the canonical GnuPG download site.
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* guix/download.scm (%mirrors)<gnupg>: Add https://gnupg.org .
2017-08-09 16:01:36 -04:00
10756b9ed1
gnu: gnupg: Update to 2.1.23.
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* gnu/packages/gnupg.scm (gnupg): Update to 2.1.23.
[arguments]: Remove 'enable-gpg2-is-gpg' from #:configure-flags, since it is now
the default.
2017-08-09 16:01:33 -04:00
1b22ecdac4
gnu: r-wgcna: Update to 1.61.
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* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.61.
[propagated-inputs]: Add r-rcpp, r-robust, r-survival.
2017-08-09 20:08:13 +02:00
c5f744a68d
gnu: Add r-robust.
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* gnu/packages/statistics.scm (r-robust): New variable.
2017-08-09 20:08:13 +02:00
5d0afe8849
gnu: Add r-fit-models.
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* gnu/packages/statistics.scm (r-fit-models): New variable.
2017-08-09 20:08:13 +02:00
0bae5fd6a7
gnu: Add r-rrcov.
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* gnu/packages/statistics.scm (r-rrcov): New variable.
2017-08-09 20:08:13 +02:00
23841b2573
gnu: Add r-pcapp.
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* gnu/packages/statistics.scm (r-pcapp): New variable.
2017-08-09 20:08:13 +02:00
0ecd065839
gnu: r-gdtools: Update to 0.1.5.
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* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.5.
2017-08-09 20:08:12 +02:00
c3317cd9fb
gnu: r-ggbeeswarm: Update to 0.6.0.
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* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.6.0.
2017-08-09 20:08:12 +02:00
ea0277abcd
gnu: icecat: Add more fixes from upstream mozilla-esr52.
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* gnu/packages/gnuzilla.scm (icecat)[source]: Add fixes for CVE-2017-7802,
CVE-2017-7803, CVE-2017-7807, and the remaining 6 out of 23 changesets for
CVE-2017-7779.
2017-08-09 13:16:52 -04:00
12025fb9b0
gnu: icecat: Rename patches to reflect CVE assignments.
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Document that our existing patches include fixes for CVE-2017-7753,
CVE-2017-7784, CVE-2017-7786, CVE-2017-7787, CVE-2017-7791, CVE-2017-7792,
CVE-2017-7798, CVE-2017-7798, CVE-2017-7800, CVE-2017-7801, and 17 out of 23
changesets for CVE-2017-7779.
* gnu/packages/gnuzilla.scm (icecat)[source]: Rename patches to reflect CVE
assignments.
2017-08-09 13:16:43 -04:00
28e12d6c81
gnu: gnurl: Update to 7.55.0.
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* gnu/packages/gnunet.scm (gnurl): Update to 7.55.0.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-08-09 18:16:51 +02:00
a4afc536f9
gnu: virt-manager: Update to 1.4.2.
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* gnu/packages/virtualization.scm (virt-manager): Update to 1.4.2.
2017-08-09 16:45:32 +02:00
448052b713
gnu: libgdata: Disable failing tests.
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* gnu/packages/gnome.scm (libgdata)[arguments]: Add ‘disable-failing-tests’
phase.
2017-08-09 16:31:06 +02:00
18f5d2a70a
gnu: Add reference to (gnu packages graph).
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This is a follow-up to 1738138cb3
2017-08-09 15:43:35 +02:00
1738138cb3
gnu: r-igraph: Move to (gnu packages graph).
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* gnu/packages/statistics.scm (r-igraph): Move from here...
* gnu/packages/graph.scm (r-igraph): ...to here.
2017-08-09 14:47:47 +02:00
31476df32e
gnu: Add python-igraph.
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* gnu/packages/graph.scm (python-igraph): New variable.
2017-08-09 14:47:47 +02:00
e57fffad90
gnu: Add igraph.
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* gnu/packages/graph.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-08-09 14:47:47 +02:00
32b7506c98
profiles: Only check file contents if the file exists.
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* guix/profiles.scm (fonts-dir-file): Check that files exist before using
"empty-file?".
2017-08-09 14:46:48 +02:00
ea77385c4c
gnu: viewnior: Don't build icon-theme.cache.
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* gnu/packages/image-viewers.scm (viewnior)[arguments]: Add phase to
disable building the icon-theme.cache.
2017-08-09 14:09:43 +03:00
2d5bf32b8a
gnu: googletest: Build shared libraries.
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* gnu/packages/check.scm (googletest)[arguments]: Pass "-DBUILD_SHARED_LIBS=ON"
in #:configure-flags.
2017-08-09 13:53:29 +03:00
c608fe8cf3
gnu: Add ois.
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* gnu/packages/game-development.scm (ois): New variable.
2017-08-09 13:53:16 +03:00
d84b09e937
gnu: dealii: Update to 8.5.0.
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* gnu/packages/maths.scm (dealii): Update to 8.5.0.
[arguments]: Delete 'hint-example-prefix phase, which would need adjusting for
this version. Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'.
Adjust configuration flags.
2017-08-09 01:56:53 -05:00
05cca6ce90
gnu: stress-make: Patch default shell.
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* gnu/packages/debug.scm (stress-make)[arguments]: Add 'set-default-shell
phase.
2017-08-09 01:56:53 -05:00
bd5b5ac0c5
gnu: suitesparse: Update to 4.5.5.
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* gnu/packages/maths.scm (suitesparse): Update to 4.5.5.
[source]: Add 'modules' and 'snippet' field to remove bundled source.
[arguments]: Remove 'prepare-out' phase. Adjust #:make-flags for metis.
Make build parallel, since it now appears to be safe.
[inputs]: Add metis.
2017-08-09 01:56:53 -05:00
2509522c4f
gnu: suitesparse: Use modify-phases.
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* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
2017-08-09 01:56:53 -05:00
9731c412e9
gnu: petsc, slepc: Use 'parallel-job-count'.
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* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to
override default unlimited '-j'.
(petsc)[arguments]: Scrub build machine cores from installed files in
'clean-local-references' phase.
2017-08-09 01:56:53 -05:00
baeaf8821d
gnu: slepc: Update to 3.7.4.
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* gnu/packages/maths.scm (slepc): Update to 3.7.4.
[source]: Use direct source link. Remove 'file-name' field.
2017-08-09 01:56:52 -05:00
41a46a5035
gnu: petsc: Update to 3.7.6.
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* gnu/packages/maths.scm (petsc): Update to 3.7.6.
2017-08-09 01:56:46 -05:00
026051953d
gnu: epiphany: Update to 3.24.3.
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* gnu/packages/gnome.scm (epiphany): Update to 3.24.3.
2017-08-09 07:20:57 +02:00
c762011e40
gnu: tracker: Update to 1.12.2.
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* gnu/packages/gnome.scm (tracker): Update to 1.12.2.
2017-08-09 07:20:56 +02:00
666901b298
gnu: gnome-online-accounts: Update to 3.24.2.
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* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.24.2.
2017-08-09 07:20:56 +02:00
a51fc34c28
gnu: mutter: Update to 3.24.4.
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* gnu/packages/gnome.scm (mutter): Update to 3.24.4.
2017-08-09 07:20:55 +02:00
0d2df50caf
gnu: gedit: Support gspell.
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* gnu/packages/gnome.scm (gedit)[arguments]: Remove #:configure-flags.
[inputs]: Add gspell.
2017-08-09 07:20:55 +02:00
e3705bb6ea
gnu: gedit: Update to 3.22.1.
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* gnu/packages/gnome.scm (gedit): Update to 3.22.1.
2017-08-09 07:20:54 +02:00
eccd35be3d
gnu: gspell: Propagate enchant dependency.
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* gnu/packages/gnome.scm (gspell)[inputs]: Move enchant from here...
[propagated-inputs]: ...to here.
2017-08-09 07:20:09 +02:00
a801ae4cae
gnu: gspell: Order inputs alphabetically.
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* gnu/packages/gnome.scm (gspell)[inputs, native-inputs]: Re-order.
2017-08-09 07:20:09 +02:00
9099bedfea
gnu: gnumeric: Update to 1.12.35.
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* gnu/packages/gnome.scm (gnumeric): Update to 1.12.35.
2017-08-09 07:20:08 +02:00
e2bf423ab4
gnu: brasero: Update to 3.12.2.
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* gnu/packages/gnome.scm (brasero): Update to 3.12.2.
2017-08-09 07:20:08 +02:00
f032d0be9c
gnu: Use HTTPS for gnome.org and subdomains.
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* gnu/packages/fonts.scm (font-bitstream-vera)[home-page]: Use HTTPS.
* gnu/packages/glib.scm (glib)[home-page]: Likewise.
* gnu/packages/gnome.scm (gcr, libgnome-keyring, gnome-keyring, evince)
(gnome-icon-theme, libgsf, gnome-mime-data, vala, vte, python2-rsvg)
(glib-networking, gnome-settings-daemon, libchamplain, grilo, grilo-plugins)
(gjs, zenity, mutter, network-manager, network-manager-applet, gdm)
[home-page]: Likewise.
* gnu/packages/gtk.scm (gtk-engines, murrine)[home-page]: Likewise.
2017-08-09 00:49:41 +02:00
9bb47d7df8
gnu: 0ad: Update to 0.0.22-alpha.
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* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.22-alpha.
2017-08-08 21:24:01 +01:00
0642838b2e
services: herd: Add a stop-service procedure.
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* gnu/services/herd.scm (stop-service): New procedure.
2017-08-08 20:49:08 +01:00
dc7b3e5633
services: herd: Fix matching ok responses from shepherd service.
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Previously the match expression case for a successful response
(where error is #f) required that the result component contained a list with a
single element.
As far as I see when looking at the responses from the shepherd, this is not
normally the case. Therefore, to avoid treating successful responses as
errors, make the match requirement more permissive, accepting any value.
* gnu/services/herd.scm (invoke-action): Change match condition for ok responses.
2017-08-08 20:48:53 +01:00
65831c6425
gnu: babl: Update to 0.1.28.
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* gnu/packages/gimp.scm (babl): Update to 0.1.28.
2017-08-08 18:43:07 +03:00
3616ff51b3
gnu: gegl: Use 'modify-phases' syntax.
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* gnu/packages/gimp.scm (gegl)[arguments]: Use the 'modify-phases' syntax.
2017-08-08 18:43:05 +03:00
b0a21b56db
gnu: gegl: Fix building on aarch64.
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* gnu/packages/gimp.scm (gegl)[arguments]: Add '-lm' configure-flag.
2017-08-08 18:43:03 +03:00
cc36165efa
gnu: ruby-activesupport: Update to 5.1.3.
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* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.1.3.
2017-08-08 21:54:20 +10:00
b998781d24
gnu: pciutils: Update to 3.5.5.
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* gnu/packages/pciutils.scm (pciutils): Update to 3.5.5.
2017-08-08 05:23:38 +02:00
Mark H Weaver