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8797 Commits

Author SHA1 Message Date
宋文武 759dd7d5b9 gnu: glibmm: Update to 2.44.0. 
* gnu/packages/glib.scm (glibmm): Update to 2.44.0.
 2015-04-22 09:57:52 +08:00
宋文武 e7a720e681 gnu: libsigc++: Update to 2.4.1. 
* gnu/packages/glib.scm (libsigc++): Update to 2.4.1.
 2015-04-22 09:57:52 +08:00
宋文武 cb77ade637 gnu: dbus-glib: Update to 0.104. 
* gnu/packages/glib.scm (dbus-glib): Update to 0.104.
 2015-04-22 09:57:51 +08:00
宋文武 3c87c02edc gnu: itstool: Update to 2.0.2. 
* gnu/packages/glib.scm (itstool): Update to 2.0.2.
 2015-04-22 09:57:51 +08:00
宋文武 cc84b08c78 gnu: gobject-introspection: Update to 1.44.0. 
* gnu/packages/glib.scm (gobject-introspection): Update to 1.44.0.
  [source]: Use mirror://gnome.
  [arguments]<#:phases>: Remove.
* gnu/packages/patches/gobject-introspection-cc.patch: Rewrite to
  set os.environ['CC'] in 'giscanner/__init__.py'.
 2015-04-22 09:57:51 +08:00
宋文武 b837e658bd gnu: python-pycairo: Fix build with with python-3.4.3. 
* gnu/packages/patches/pycairo-wscript.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (python-pycairo)[source]: Use it.
  [build-system]: Use waf-build-system.
  [native-inputs]: Add python-waf.
  [arguments]<#:phases>: Use 'modify-phases'.  Add 'patch-waf phase.
* gnu/packages/gtk.scm (python2-pycairo): Adjust accordingly.
 2015-04-22 09:57:51 +08:00
宋文武 45ca81c20d gnu: Add python-waf. 
* gnu/packages/python.scm (python-waf, python2-waf): New variables.
 2015-04-22 09:57:51 +08:00
Mark H Weaver 360ebb1490 gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to dd3a42e.
 2015-04-22 09:57:51 +08:00
Mark H Weaver 3a5bce15d9 gnu: guix: Don't install in /etc/bash_completion.d within build environment. 
Fixes <http://bugs.gnu.org/20394>.
Patch by Ludovic Courtès <ludo@gnu.org>.

* gnu/packages/package-management.scm (guix)[arguments]: Pass
  "--with-bash-completion-dir" option to configure.
 2015-04-22 09:57:51 +08:00
宋文武 f210f057a7 gnu: python-pycairo: Fix build with with python-3.4.3. 
* gnu/packages/patches/pycairo-wscript.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (python-pycairo)[source]: Use it.
  [build-system]: Use waf-build-system.
  [native-inputs]: Add python-waf.
  [arguments]<#:phases>: Use 'modify-phases'.  Add 'patch-waf phase.
* gnu/packages/gtk.scm (python2-pycairo): Adjust accordingly.
 2015-04-22 09:53:34 +08:00
宋文武 feaae48499 gnu: Add python-waf. 
* gnu/packages/python.scm (python-waf, python2-waf): New variables.
 2015-04-22 09:53:24 +08:00
Mark H Weaver aad8877d91 gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to dd3a42e.
 2015-04-21 21:30:23 -04:00
Mark H Weaver f1a7fd7029 gnu: libxfont: Update to 1.5.1. 
* gnu/packages/xorg.scm (libxfont): Update to 1.5.1.
 2015-04-21 19:11:24 -04:00
Mark H Weaver dd3a42e624 gnu: guix: Don't install in /etc/bash_completion.d within build environment. 
Fixes <http://bugs.gnu.org/20394>.
Patch by Ludovic Courtès <ludo@gnu.org>.

* gnu/packages/package-management.scm (guix)[arguments]: Pass
  "--with-bash-completion-dir" option to configure.
 2015-04-21 19:04:34 -04:00
Mark H Weaver d8d6d096be gnu: tzdata: Update to 2015c. 
* gnu/packages/base.scm (tzdata): Update to 2015c.
 2015-04-21 19:03:25 -04:00
Andreas Enge 30536f2c8b gnu: libidn: Update to 1.30. 
* gnu/packages/libidn.scm (libidn): Update to 1.30.
 2015-04-21 18:57:28 -04:00
Mark H Weaver 54b76b60d9 Revert "gnu: libidn: Update to 1.30." 
This reverts commit 8462a03f28.
 2015-04-21 17:47:34 -04:00
Andreas Enge 8462a03f28 gnu: libidn: Update to 1.30. 
* gnu/packages/libidn.scm (libidn): Update to 1.30.
 2015-04-21 22:59:50 +02:00
Andreas Enge 8185519dba gnu: ocrad: Update to 0.25. 
* gnu/packages/ocr.scm (ocrad): Update to 0.25.
 2015-04-21 22:57:29 +02:00
Ludovic Courtès 6162b95d21 gnu: glibc: Add dependency on Gettext, to install the message catalogs. 
This fixes a bug whereby the libc.mo files were not installed, and thus
translations of libc's messages were not available.

* gnu/packages/commencement.scm (gettext-boot0): New variable.
  (glibc-final)[native-inputs]: New field.
* gnu/packages/base.scm (glibc)[native-inputs]: Add GNU-GETTEXT.
 2015-04-21 22:53:09 +02:00
Ricardo Wurmus 6260d1a869 gnu: Add TuxGuitar. 
* gnu/packages/music.scm (tuxguitar): New variable.
 2015-04-21 21:51:38 +02:00
Ricardo Wurmus 8581c81307 gnu: Add SWT. 
* gnu/packages/java.scm (swt): New variable.
 2015-04-21 21:51:38 +02:00
Ludovic Courtès ef593a103d gnu: libltdl: Remove unneeded patch. 
* gnu/packages/autotools.scm (libltdl)[source]: Remove 'patches'.
 2015-04-21 21:16:24 +02:00
Ludovic Courtès 4a2b74bf4c gnu: ld-wrapper: Ignore the .so argument following '-dynamic-linker'. 
Reported at <http://bugs.gnu.org/20102>.

* gnu/packages/ld-wrapper.in (library-files-linked): Rename 'path+files'
  to 'path+files+args'.  Thread the reverse list of previous arguments.
  Add case for when the previous argument is "-dynamic-linker".
 2015-04-21 21:14:28 +02:00
Ludovic Courtès 4267c637d6 gnu: ld-wrapper: Add debugging info. 
* gnu/packages/ld-wrapper.in (ld-wrapper): Add "libraries linked"
  debugging statement.
 2015-04-21 21:08:44 +02:00
Ludovic Courtès cbbb11c8a0 gnu: Rename ld-wrapper2 to ld-wrapper. 
* gnu/packages/ld-wrapper2.in: Rename to...
* gnu/packages/ld-wrapper.in: ... this.
* gnu-system.am (MISC_DISTRO_FILES): Remove ld-wrapper2.in.
* gnu/packages/commencement.scm (fixed-ld-wrapper): Remove.
  (gcc-toolchain): Restore pre-77db91ad inputs.
 2015-04-21 21:07:11 +02:00
Ricardo Wurmus e4e5a4d88f gnu: Add eXpress. 
* gnu/packages/bioinformatics.scm (express): New variable.
 2015-04-21 17:57:22 +02:00
Ricardo Wurmus 9794180d5e gnu: Add bamtools. 
* gnu/packages/bioinformatics.scm (bamtools): New variable.
 2015-04-21 17:57:22 +02:00
Ricardo Wurmus dbf4ed7c91 gnu: Add subread. 
* gnu/packages/bioinformatics.scm (subread): New variable.
 2015-04-21 10:46:23 +02:00
Ludovic Courtès 44fd6ef137 ui: Add 'symlink' replacement with better error reporting. 
* guix/ui.scm (symlink): New procedure.
 2015-04-20 22:37:20 +02:00
Ludovic Courtès 3392ce5d60 system: Make /gnu/store a read-only bind mount by default. 
* gnu/system/file-systems.scm (%immutable-store): New variable.
  (%base-file-systems): Add it.
* doc/guix.texi (File Systems): Document it.
 2015-04-20 22:21:51 +02:00
Ludovic Courtès b86fee7848 file-systems: Use a second 'mount' call for read-only bind mounts. 
* gnu/build/file-systems.scm (MS_REMOUNT): New constant.
  (mount-file-system): Add 'flags' local variable.   When FLAGS has
  MS_BIND & MS_RDONLY, call 'mount' with MS_REMOUNT.
* gnu/services/base.scm (file-system-service) <start>: Likewise.
 2015-04-20 22:16:13 +02:00
Ludovic Courtès 38cf2ba084 gnu: Remove all #:select from (gnu packages ...) modules. 
This works around Guile bug <http://bugs.gnu.org/15540>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages/engineering.scm: Don't #:select from (gnu packages ...).
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/moe.scm: Likewise, and #:select from (guix licenses)
  instead.
 2015-04-20 15:50:59 +02:00
Ludovic Courtès f73286345e gexp: Add printers for <gexp-input> and <gexp-output>. 
* guix/gexp.scm (write-gexp-input, write-gexp-output): New procedures.
  (<gexp-input>, <gexp-output>): Use them as printers.
 2015-04-20 15:41:41 +02:00
Ludovic Courtès c568191a93 profiles: Create a CA certificate bundle only when it would be non-empty. 
* guix/profiles.scm (ca-certificate-bundle): Create
  $output/etc/ssl/certs if and only if CA-FILES is non-empty.
 2015-04-20 15:41:41 +02:00
Ricardo Wurmus 51c649992e gnu: Add sra-tools. 
* gnu/packages/bioinformatics.scm (sra-tools): New variable.
 2015-04-20 15:29:17 +02:00
Ricardo Wurmus 75dd242480 gnu: Add NCBI VDB. 
* gnu/packages/bioinformatics.scm (ncbi-vdb): New variable.
 2015-04-20 15:29:17 +02:00
Ricardo Wurmus 2651a5e695 gnu: Add NGS Java bindings. 
* gnu/packages/bioinformatics.scm (ngs-java): New variable.
 2015-04-20 15:29:16 +02:00
Ricardo Wurmus 282c5087b4 gnu: Add NGS SDK. 
* gnu/packages/bioinformatics.scm (ngs-sdk): New variable.
 2015-04-20 15:28:58 +02:00
Ricardo Wurmus 85c37e29a4 gnu: Add Biopython. 
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New
  variables.
 2015-04-20 15:23:23 +02:00
Eric Bavier 40b084a326 gnu: Adjust latest perl modules to new 'modify-phases' syntax. 
* gnu/packages/compression.scm (perl-compress-raw-zlib)[arguments]:
  Add missing quotes, as needed since commit f8503e2.
* gnu/packages/perl.scm (perl-ipc-run)[arguments]: Likewise.
* gnu/packages/xml.scm (perl-xml-sax)[arguments]: Likewise.
 2015-04-19 21:39:32 -05:00
宋文武 61c21ad319 gnu: Add WebKitGTK+. 
* gnu/packages/webkit.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-04-20 10:34:24 +08:00
Eric Bavier 97b05abe6d gnu: Add JSON-Any. 
* gnu/packages/perl.scm (perl-json-any): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier 47945cf353 import: cpan: Fix license string for Artistic license. 
* guix/import/cpan.scm (string->license): Remove extraneous "_0"
  suffix for Artistics licenses.
 2015-04-19 19:48:52 -05:00
Eric Bavier ae6904dc0b gnu: nix: Propagate perl inputs. 
* gnu/packages/package-management.scm (nix)[inputs]: Move
  perl-www-curl, perl-dbi, perl-dbd-sqlite to...
  [propagated-inputs]: ...this new field
 2015-04-19 19:48:52 -05:00
Eric Bavier 8ac84f230c gnu: Add Sys-Hostname-Long. 
* gnu/packages/perl.scm (perl-sys-hostname-long): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier 10ef803e7d gnu: Add Text-Table. 
* gnu/packages/perl.scm (perl-text-table): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier 7ae9557181 gnu: Add Text-Aligner. 
* gnu/packages/perl.scm (perl-text-aligner): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier f21671f469 gnu: Add Set-Scalar. 
* gnu/packages/perl.scm (perl-set-scalar): New variable.
 2015-04-19 19:48:52 -05:00
Eric Bavier b4dcb026d6 gnu: Add SQL-SplitStatement. 
* gnu/packages/databases.scm (perl-sql-splitstatement): New variable.
 2015-04-19 19:48:52 -05:00