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36138 Commits

Author SHA1 Message Date
Ricardo Wurmus f8b697a385
gnu: bedops: Update to 2.4.35. 
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.35.
[source]: Fetch from git.
 2018-10-20 23:37:34 +02:00
Ricardo Wurmus 337d72fb44
gnu: bedops: Use INVOKE. 
* gnu/packages/bioinformatics.scm (bedops)[arguments]: Use INVOKE.
 2018-10-20 23:37:34 +02:00
Ricardo Wurmus c793f4d8fb
gnu: bamm: Fetch from git and use INVOKE. 
* gnu/packages/bioinformatics.scm (bamm)[source]: Fetch from git.
[arguments]: Use INVOKE and return #T unconditionally.
 2018-10-20 23:37:34 +02:00
Ricardo Wurmus 95758e2faf
gnu: aragorn: Use invoke and simplify. 
* gnu/packages/bioinformatics.scm (aragorn)[arguments]: Use INVOKE in build
phase; simplify install phase.
 2018-10-20 23:37:33 +02:00
Ricardo Wurmus 8b4102b903
gnu: clipper: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (clipper): Update to 1.2.1.
[source]: Fetch from git.
[arguments]: Add fix-typo phase.
 2018-10-20 23:37:33 +02:00
Ricardo Wurmus 895cf8278a
gnu: python-pybedtools: Update to 0.7.10. 
* gnu/packages/bioinformatics.scm (python2-pybedtools): Update to 0.7.10.
[arguments]: Disable broken tests.
[propagated-inputs]: Replace bedtools with bedtools-2.26; add
python-matplotlib, python-pysam, and python-pyyaml.
[native-inputs]: Remove python-pyyaml; add kentutils, python-numpy,
python-pandas, and python-six.
(python-pybedtools): New variable.
 2018-10-20 23:37:33 +02:00
Ricardo Wurmus 129363b762
gnu: Add bedtools-2.26. 
* gnu/packages/bioinformatics.scm (bedtools-2.26): New variable.
 2018-10-20 23:37:28 +02:00
Kei Kebreau bfa47f14b1
gnu: cataclysm-dda: Update snapshot. 
* gnu/packages/games.scm (cataclysm-dda): Update snapshot to 0b2c194e5.
 2018-10-20 14:38:45 -04:00
Kei Kebreau 82cbe4e046
gnu: maxima: Update to 5.42.0. 
* gnu/packages/maths.scm (maxima): Update to 5.42.0.
 2018-10-20 14:38:45 -04:00
Oleg Pykhalov 227da3a4c5
gnu: python-glances: Update to 3.0.2. 
* gnu/packages/python.scm (python-glances): Update to 3.0.2.
 2018-10-20 18:24:23 +03:00
Oleg Pykhalov 67fd64a490
gnu: emacs-hy-mode: Update to 1.0.3. 
* gnu/packages/emacs.scm (emacs-hy-mode): Update to 1.0.3.
 2018-10-20 17:48:58 +03:00
Oleg Pykhalov e661dca879
gnu: emacs-erc-hl-nicks: Update to 1.3.3. 
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): Update to 1.3.3.
 2018-10-20 17:48:49 +03:00
Oleg Pykhalov 91c5e6a69d
gnu: emacs-yasnippet: Update to 0.13.0. 
* gnu/packages/emacs.scm (emacs-yasnippet): Update to 0.13.0.
 2018-10-20 17:48:36 +03:00
Oleg Pykhalov 292d637b9e
gnu: emacs-nginx-mode: Update to 1.1.9. 
* gnu/packages/emacs.scm (emacs-nginx-mode): Update to 1.1.9.
 2018-10-20 17:48:28 +03:00
Oleg Pykhalov 2f1dacc281
gnu: emacs-rainbow-mode: Update to 1.0.1. 
* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 1.0.1.
 2018-10-20 17:48:07 +03:00
Oleg Pykhalov 45dcdf5349
gnu: emacs-smart-mode-line: Update to 2.12.0. 
* gnu/packages/emacs.scm (emacs-smart-mode-line): Update to 2.12.0.
 2018-10-20 17:47:46 +03:00
Oleg Pykhalov 9137596179
gnu: emacs-fill-column-indicator: Update to 1.89. 
* gnu/packages/emacs.scm (emacs-fill-column-indicator): Update to 1.89.
 2018-10-20 17:47:13 +03:00
Oleg Pykhalov 83246854f3
gnu: emacs-ggtags: Update to 0.8.13. 
* gnu/packages/emacs.scm (emacs-ggtags): Update to 0.8.13.
 2018-10-20 17:46:43 +03:00
Oleg Pykhalov 42f9ebdc77
gnu: emacs-which-key: Update to 3.3.0. 
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.3.0.
 2018-10-20 17:37:32 +03:00
Christopher Baines 0d3f170864
gnu: Add soundconverter. 
* gnu/packages/gnome.scm (soundconverter): New variable.
* gnu/packages/patches/soundconverter-remove-gconf-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-10-20 12:24:50 +01:00
nixo b5a927b3ba
gnu: Add enchive. 
* gnu/packages/crypto.scm (enchive): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 23:39:41 +02:00
Ludovic Courtès 64791eb7e1
services: ntp: Document 'ntp-service-type' and 'ntp-configuration'. 
* gnu/services/networking.scm (<ntp-configuration>)[servers]: Add
default value.
(ntp-service-type)[default-value]: New field.
(ntp-service): Mark as deprecated.
* gnu/services/desktop.scm (%desktop-services): Use (service
ntp-service-type) instead of calling 'ntp-service'.
* doc/guix.texi (Networking Services): Document 'ntp-service-type' and
'ntp-configuration'.
 2018-10-19 23:39:41 +02:00
Meiyo Peng bc83b2e22f
gnu: Add i3blocks. 
* gnu/packages/wm.scm (i3blocks): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 23:39:37 +02:00
Ricardo Wurmus cdb84eb0e6
gnu: qsynth: Update to 0.5.3. 
* gnu/packages/audio.scm (qsynth): Update to 0.5.3.
 2018-10-19 21:59:28 +02:00
Ludovic Courtès 0ee6692a63
gnu: sbcl-slime-swank: Remove reference to unbound variable. 
Fixes a regression introduced in commit
c4d4ae1e16.

* gnu/packages/lisp.scm (sbcl-slime-swank)[license]: Remove extra 'license'.
 2018-10-19 18:34:07 +02:00
Amirouche b1e6b93805
gnu: guile-wiredtiger: Update to 0.7.0. 
* gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0.
[inputs]: Replace wiredtiger with wiredtiger-3
[propagated-inputs]: Remove guile-lib, add guile-bytestructures
[description]: Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 18:28:57 +02:00
Amirouche 4680fef705
gnu: Add wiredtiger 3.1.0 
* gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from
  wiredtiger

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 18:28:57 +02:00
Ludovic Courtès 19c924af4f
tests: Run 'guix pack' tests using the external store. 
Fixes <https://bugs.gnu.org/32184>.

* guix/tests.scm (call-with-external-store): New procedure.
(with-external-store): New macro.
* tests/pack.scm (%store): Remove.
(test-assertm): Add 'store' parameter.
("self-contained-tarball"): Wrap in 'with-external-store'.
* tests/guix-pack.sh: Connect to the external store, if possible, by
setting NIX_STORE_DIR and GUIX_DAEMON_SOCKET.  Remove most uses of
'--bootstrap'.
 2018-10-19 18:28:57 +02:00
Ludovic Courtès fbdb7b9526
pack: Fix "-C none -f tarball". 
Fixes a regression introduced in
48b444304e whereby "guix pack -C none
hello" would fail with:

  ERROR: In procedure string-join:
  In procedure string-join: Wrong type argument in position 1: #f
  builder for `/gnu/store/…-tarball-pack.tar.drv' failed with exit code 1

* guix/scripts/pack.scm (self-contained-tarball): Adjust for when
'compressor-command' returns #f.
 2018-10-19 18:28:57 +02:00
Pierre Neidhardt 3bd45f5c80
gnu: emacs-slime: License is a mix of GPL2+ and public domain. 
* gnu/packages/emacs.scm (emacs-slime)[license]: Update to (gpl2+ public-domain)
 2018-10-19 18:00:14 +02:00
Pierre Neidhardt e2e5004f6e
gnu: Add lparallel. 
* gnu/packages/lisp.scm (cl-lparallel, ecl-lparallel, sbcl-lparallel): New variables.
 2018-10-19 17:56:38 +02:00
Pierre Neidhardt 24fd7586a4
gnu: Add sbcl-cl-webkit. 
* gnu/packages/lisp.scm (sbcl-cl-webkit): New variable.
 2018-10-19 17:56:38 +02:00
Pierre Neidhardt c80dfee9f1
gnu: Add sbcl-cl-cffi-gtk. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
 2018-10-19 17:56:38 +02:00
Pierre Neidhardt 7b5b8c4405
gnu: Add sbcl-cl-cffi-gtk-gdk. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt a3bdddc359
gnu: Add sbcl-cl-cffi-gtk-gdk-pixbuf. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk-pixbuf): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 9ecc457b52
gnu: Add sbcl-cl-cffi-gtk-pango. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-pango): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 7176fe7c32
gnu: Add sbcl-cl-cffi-gtk-cairo. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-cairo): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 867b3f4780
gnu: Add sbcl-cl-cffi-gtk-gio. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gio): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 77a5461c31
gnu: Add sbcl-cl-cffi-gtk-gobject. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gobject): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 64dcf7d99b
gnu: Add sbcl-cl-cffi-gtk-glib. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-glib): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt c88985d9b0
gnu: Add sbcl-cl-cffi-gtk. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 85be9191ee
gnu: Add closer-mop. 
* gnu/packages/lisp.scm (cl-closer-mop, ecl-closer-mop, sbcl-closer-mop): New variables.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 4aa2342008
gnu: Add trivial-garbage. 
* gnu/packages/lisp.scm (cl-trivial-garbage, ecl-trivial-garbage, sbcl-trivial-garbage): New variables.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 2cc931db44
gnu: Add cl-unix-opts. 
* gnu/packages/lisp.scm (cl-unix-opts, ecl-unix-opts, sbcl-unix-opts): New variables.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt dedbf37e5d
gnu: Add cl-json. 
* gnu/packages/lisp.scm (cl-json, ecl-cl-json, sbcl-cl-json): New variables.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 4624d2e2b4
gnu: Add parenscript. 
* gnu/packages/lisp.scm (cl-parenscript, ecl-parenscript, sbcl-parenscript): New variables.
 2018-10-19 17:56:36 +02:00
Pierre Neidhardt 8f065b47c7
gnu: Add sbcl-cl-sqlite. 
* gnu/packages/lisp.scm (sbcl-cl-sqlite): New variable.
 2018-10-19 17:56:36 +02:00
Pierre Neidhardt 4112307268
gnu: Add sbcl-cffi. 
* gnu/packages/lisp.scm (sbcl-cffi): New variable.
 2018-10-19 17:56:36 +02:00
Pierre Neidhardt d3142f2ffb
gnu: Add sbcl-cffi-grovel. 
* gnu/packages/lisp.scm (sbcl-cffi-grovel): New variable.
 2018-10-19 17:56:36 +02:00
Pierre Neidhardt 9eea4e0302
gnu: Add sbcl-cffi-libffi. 
* gnu/packages/lisp.scm (sbcl-cffi-libffi): New variable.
 2018-10-19 17:56:36 +02:00