9e0c135c39
gnu: python-dendropy: Update to 4.4.0.
...
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy):
Update to 4.4.0.
[source]: Use GitHub URI. Remove patch.
[properties]: Remove field.
(python2-dendropy)[arguments]: Run tests with setup.py.
[native-inputs]: Remove 'python2-nose.
* gnu/packages/patches/python-dendropy-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete it.
2018-07-29 22:53:10 +10:00
19601e895b
gnu: python2-psycopg2: Update to 2.7.5.
...
* gnu/packages/bioinformatics.scm (python2-psycopg2): Update to 2.7.5.
2018-07-29 22:53:10 +10:00
5d5a02dd4c
gnu: Add python-fastalite.
...
* gnu/packages/bioinformatics.scm (python-fastalite, python2-fastalite):
New variables.
2018-07-29 21:58:00 +10:00
10d5315361
gnu: Add chroma.
...
* gnu/packages/games.scm (chroma): New variable.
2018-07-29 09:37:20 +02:00
f8e2df9851
gnu: linux-libre: Update to 4.17.11.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.11.
(%linux-libre-hash): Update hash.
2018-07-29 03:32:03 -04:00
c85a76cc00
gnu: linux-libre@4.14: Update to 4.14.59.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.59.
(%linux-libre-4.14-hash): Update hash.
2018-07-29 03:31:10 -04:00
8b30bc82dc
gnu: linux-libre@4.9: Update to 4.9.116.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.116.
2018-07-29 03:30:32 -04:00
4262a491ce
gnu: linux-libre@4.4: Update to 4.4.145.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.145.
2018-07-29 03:29:42 -04:00
6219685922
gnu: clojure: Fix index generation.
...
* gnu/packages/java.scm (clojure)[arguments]: Add phase 'fix-manifest-classpath to remove
offending directory entry making indexing fail.
2018-07-29 08:41:34 +02:00
48d7ac175f
gnu: openlibm: Update to 0.6.0.
...
* gnu/packages/maths.scm (openlibm): Update to 0.6.0.
2018-07-28 18:12:13 +02:00
46bda5eb7a
gnu: glm: Update home page.
...
* gnu/packages/maths.scm (glm)[home-page]: Use HTTPS.
2018-07-28 17:56:59 +02:00
5ea4b5943d
gnu: glm: Update to 0.9.9.0.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.0.
[source](uri): Change to new download location.
2018-07-28 17:55:04 +02:00
71de61c353
gnu: libjpeg-turbo: Update license.
...
* gnu/packages/image.scm (libjpeg-turbo)[license]: Add ZLIB.
2018-07-28 17:27:16 +02:00
6871121be0
gnu: libjpeg-turbo: Update to 2.0.0.
...
* gnu/packages/image.scm (libjpeg-turbo): Update to 2.0.0.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
2018-07-28 17:27:16 +02:00
0981ec1300
gnu: accountsservice: Update to 0.6.50.
...
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.50.
[arguments]: Add "--enable-elogind" and "--disable-systemd" to #:configure-flags.
[inputs]: Add ELOGIND.
2018-07-28 17:27:15 +02:00
35fa923d8b
gnu: dconf: Update to 0.28.0.
...
* gnu/packages/gnome.scm (dconf): Update to 0.28.0.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
[native-inputs]: Add VALA and GLIB:BIN.
2018-07-28 17:27:15 +02:00
e20e6b4061
gnu: dconf: Update license.
...
* gnu/packages/gnome.scm (dconf)[license]: Change from LGPL2.1 to LGPL2.1+.
2018-07-28 17:27:15 +02:00
03676d6f35
gnu: dconf: Install GTK documentation.
...
* gnu/packages/gnome.scm (dconf)[native-inputs]: Add GTK-DOC.
[arguments]: Adjust #:configure-flags accordingly.
2018-07-28 17:27:15 +02:00
bc036f4c99
gnu: dconf: Adjust inputs and remove obsolete workaround.
...
* gnu/packages/gnome.scm (dconf)[inputs]: Remove GLIB and LIBXML2.
[propagated-inputs]: Add GLIB.
[native-inputs]: Add LIBXML2. Remove INTLTOOL.
[arguments]: Remove #:phases.
2018-07-28 17:27:15 +02:00
c95c9032b4
gnu: x265: Fix compilation on ARMv7.
...
* gnu/packages/patches/x265-arm-asm-primitives.patch: New file.
* gnu/packages/video.scm (x265)[sources](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-07-28 15:08:07 +02:00
5193ae64ca
gnu: mariadb: Work around GCC ICE on armhf-linux.
...
* gnu/packages/patches/mariadb-gcc-ice.patch: New file.
* gnu/packages/databases.scm (mariadb)[arguments]: Conditionally add
'apply-patch' phase.
[native-inputs]: Conditionally add "gcc-ice-patch" input.
2018-07-28 15:08:07 +02:00
346a632144
doc: Clarify some of guix-daemon's GC options.
...
Reported by Pierre Neidhardt <ambrevar@gmail.com>.
* doc/guix.texi (Invoking guix-daemon): Fix an incorrect statement
regarding --gc-keep-outputs. Add a little to the description of this
option and --gc-keep-derivations.
2018-07-28 03:00:16 -07:00
b15a020dd5
gnu: allegro: Update to 5.2.4.0.
...
* gnu/packages/game-development.scm (allegro): Update to 5.2.4.0.
[source]: Update URL.
2018-07-27 14:30:49 -04:00
74a4fa5040
gnu: gcc@8: Update to 8.2.0.
...
* gnu/packages/gcc.scm (gcc-8): Update to 8.2.0.
2018-07-27 18:52:58 +02:00
f00d66b12c
gnu: Add font-blackfoundry-inria.
...
* gnu/packages/fonts.scm (font-blackfoundry-inria): New file.
2018-07-27 18:00:06 +02:00
223779c4c5
gnu: emacs-flycheck: Don't rely on pkg-info.el for 'flycheck-version'.
...
* gnu/packages/emacs.scm (flycheck)[source]: Add 'modules' and
'snippet'.
2018-07-27 18:00:06 +02:00
26fd7b24ec
gnu: pigx-scrnaseq: Disable another expensive test.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Disable multiqc
test.
2018-07-27 15:44:23 +02:00
ed2dfe3955
gnu: Add snakemake-4.
...
* gnu/packages/python.scm (snakemake-4): New variable.
* gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq,
pigx-chipseq)[inputs]: Use it.
2018-07-27 15:30:38 +02:00
269f100330
gnu: snakemake: Add missing dependencies.
...
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie,
python-docutils, python-jinja2, python-jsonschema, and python-networkx.
2018-07-27 15:30:38 +02:00
216a72a957
gnu: Add python-datrie.
...
* gnu/packages/python.scm (python-datrie): New variable.
2018-07-27 15:30:38 +02:00
beb8511c73
gnu: imagemagick: Update to 6.9.10-8.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-8.
2018-07-27 14:43:43 +02:00
2fcbc572f9
gnu: mbedtls-apache: Update to 2.7.5.
...
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.5.
2018-07-27 14:43:43 +02:00
b62715aa82
gnu: snakemake: Update to 5.2.0.
...
* gnu/packages/python.scm (snakemake): Update to 5.2.0.
2018-07-27 14:19:43 +02:00
22305f859b
gnu: guile-sdl2: Update to 0.3.0.
...
* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.0.
[arguments]: Remove "patch-makefile" phase.
2018-07-27 14:19:33 +02:00
d804d0b9ef
import: hackage: Emit native-inputs in the importer.
...
* guix/import/cabal.scm (cabal-custom-setup-dependencies): Export.
(cabal-package-custom-setup): Export.
(<cabal-package>): New field "custom-setup".
(make-cabal-package): Modify.
(eval-cabal): Modify.
* guix/import/hackage.scm (cabal-dependencies->names): Factor out...
(cabal-test-dependencies->names): ...this.
(cabal-custom-setup-dependencies->names): New procedure.
(hackage-module->sexp): Modify.
2018-07-27 11:42:53 +02:00
9dafb64711
gnu: tiled: Update to 1.1.6.
...
* gnu/packages/game-development.scm (tiled): Update to 1.1.6.
[arguments]: Substitute invoke for system*.
2018-07-27 00:17:06 -04:00
6e92fba4b0
gnu: python-xsge: Update to 2018.02.26.
...
* gnu/packages/game-development.scm (python-xsge, python2-xsge): Update to
2018.02.26.
[arguments]: Substitute invoke for system*.
2018-07-26 23:35:45 -04:00
d36b98ad95
gnu: freeciv: Update to 2.6.0.
...
* gnu/packages/games.scm (freeciv): Update to 2.6.0.
2018-07-26 14:43:10 -04:00
e8ec2dda08
gnu: ecryptfs-utils: Patch more hardcoded paths.
...
* gnu/packages/linux.scm (ecryptfs-utils): [arguments]: Add an additional file
to be patched that was missing in the last fix. Ecryptfs will now find the
umount binary path as well as mount and others. Re-sort the list of files to be
substituted.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-07-26 13:19:57 -04:00
92526ade57
gnu: cabextract: Delete bundled libmspack.
...
* gnu/packages/compression.scm (cabextract)[source](modules, snippet): New field.
2018-07-26 17:30:18 +02:00
e0a98e7bd5
gnu: cabextract: Update to 1.7.
...
* gnu/packages/compression.scm (cabextract): Update to 1.7.
2018-07-26 17:28:35 +02:00
4bda2274a5
gnu: fuse: Update source hash.
...
The fuse 2.9.8 tarball and signature was modified in place. Both are signed
by the same key, at different dates, and the only differences are directory
timestamps and a ChangeLog update.
* gnu/packages/linux.scm (fuse)[source](sha256): Update.
2018-07-26 17:17:45 +02:00
a9446dde2b
gnu: make-u-boot-package: Don't install "sunxi-spl-with-ecc.bin".
...
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]<#:phases>
[install]: Don't install "sunxi-spl-with-ecc.bin".
2018-07-26 15:54:52 +02:00
d38755cb91
gnu: Add ruby-net-scp.
...
* gnu/packages/ruby.scm (ruby-net-scp): New variable.
2018-07-26 15:54:52 +02:00
714b49f68d
gnu: translate-shell: Fix .el install directory.
...
* gnu/packages/dictionaries.scm (translate-shell)[arguments]: Change the
install directory during the custom 'emacs-install phase to match with
other emacs .el packages.
2018-07-26 16:14:11 +03:00
d60772dcdd
gnu: java-picard: Fix manifest.
...
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Adjust phase
'edit-classpath-in-manifest for the new manifest generation code.
2018-07-26 12:46:50 +02:00
bca72b39c7
gnu: python-qsintilla: Fix building.
...
* gnu/packages/qt.scm (python-qscintilla)[arguments]: Extend custom
'configure phase to also patch the 'installed.txt' file.
2018-07-26 13:21:05 +03:00
54e543b626
gnu: linux-libre: Update to 4.17.10.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.10.
(%linux-libre-hash): Update hash.
2018-07-26 04:45:33 -04:00
54465c4dbc
gnu: linux-libre@4.14: Update to 4.14.58.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.58.
(%linux-libre-4.14-hash): Update hash.
2018-07-26 04:44:40 -04:00
4bc1528aa5
gnu: linux-libre@4.9: Update to 4.9.115.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.115.
2018-07-26 04:44:00 -04:00
Ben Woodcroft