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24174 Commits

Author SHA1 Message Date
Ricardo Wurmus 8f2c410fc5
gnu: r-preprocesscore: Update to 1.38.1. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.1.
 2017-07-27 10:04:09 +02:00
Ricardo Wurmus 620b0468e9
gnu: Add cowsay. 
* gnu/packages/games.scm (cowsay): New variable.
 2017-07-27 10:03:37 +02:00
Tobias Geerinckx-Rice 56ab0f0c6d
gnu: nnn: Update to 1.3. 
* gnu/packages/admin.scm (nnn): Update to 1.3.
 2017-07-27 05:03:33 +02:00
Dave Love efcacc17c7
gnu: openmpi: Enable SGE support. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-sge" in
 #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0 217ce5702c
gnu: mg: Add new phase to find 'diff'. 
* gnu/packages/text-editors.scm (mg)[phases]: Add new 'correct-location-of-difftool'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0 bcd1544dd2
gnu: mg: Fetch source via HTTPS. 
* gnu/packages/text-editors.scm (mg)[source]: Use HTTPS.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0 1a5a8afea0
gnu: mg: Update to 20170401. 
* gnu/packages/text-editors.scm (mg): Update to 20170401.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
Danny Milosavljevic 9ea61b1c6f
gnu: Add python-flask-principal. 
* gnu/packages/python.scm (python-flask-principal, python2-flask-principal):
New variables.
 2017-07-26 21:52:30 +02:00
Tobias Geerinckx-Rice 9d9fc39946
gnu: Add lziprecover. 
* gnu/packages/compression.scm (lziprecover): New variable.
 2017-07-26 19:38:59 +02:00
Leo Famulari f96dbf6b70
gnu: net-tools: Add a test-only variant and use it for GnuTLS. 
* gnu/packages/linux.scm (net-tools-for-tests): Add hidden net-tools variant.
* gnu/packages/tls.scm (gnutls)[native-inputs]: Use net-tools-for-tests instead
of net-tools.
 2017-07-26 12:06:52 -04:00
Ricardo Wurmus d39238cf3d
gnu: synfig: Fix boost build error. 
* gnu/packages/animation.scm (synfig)[arguments]: Add phase
"fix-boost-build-error".
 2017-07-26 12:27:12 +02:00
Ludovic Courtès bcd757fdb4
gnu: mg: Move to (gnu packages text-editors). 
* gnu/packages/mg.scm: Remove.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/text-editors.scm (mg): New variable.
 2017-07-26 11:11:11 +02:00
Andy Wingo a5130d10fa
gnu: Add fcgiwrap service. 
* doc/guix.texi (Web Services): Add documentation.
* gnu/services/web.scm (<fcgiwrap-configuration>): New record type.
(fcgiwrap-accounts, fcgiwrap-shepherd-service): New service extensions.
(fcgiwrap-service-type): New service type.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 11:00:04 +02:00
Efraim Flashner 1cae188e61
gnu: glpk: Update to 4.63. 
* gnu/packages/maths.scm (glpk): Update to 4.63.
 2017-07-26 10:15:54 +03:00
Efraim Flashner 360f692783
gnu: perl-anyevent: Update to 7.14. 
* gnu/packages/libevent.scm (perl-anyevent): Update to 7.14.
 2017-07-26 09:31:30 +03:00
Danny Milosavljevic 4f038621a5
gnu: leafpad: Use glib-or-gtk build-system. 
* gnu/packages/text-editors.scm (leafpad): Use glib-or-gtk build-system.
 2017-07-26 08:19:47 +02:00
Danny Milosavljevic ff4192ff57
gnu: claws-mail: Disable (duplicate) Gtk+ icon cache generation. 
* gnu/packages/mail.scm (claws-mail)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
 2017-07-26 08:18:46 +02:00
Kei Kebreau 8ad40a69d1
gnu: evince: Update to 3.24.1. 
* gnu/packages/gnome.scm (evince): Update to 3.24.1.
[source]: Remove obsolete patch.
* gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-25 18:41:05 -04:00
Tobias Geerinckx-Rice 980fe414c1
gnu: hplip: Update to 3.17.7. 
* gnu/packages/cups.scm (hplip): Update to 3.17.7.
 2017-07-25 23:59:21 +02:00
Tobias Geerinckx-Rice ae03ee4274
gnu: fdisk: Update to 2.0.0a1. 
* gnu/packages/disk.scm (fdisk): Update to 2.0.0a1.
[arguments]: Make sure the build finds its own headers.
 2017-07-25 23:58:34 +02:00
Tobias Geerinckx-Rice aa588d8a38
gnu: sdparm: Update to 1.10. 
* gnu/packages/disk.scm (sdparm): Update to 1.10.
 2017-07-25 23:58:34 +02:00
Christopher Baines f135b4ae83
git-download: Speed up 'git-predicate'. 
Adjust 'git-predicate' to use data structures that perform better when used
with git repositories with a large number of files.

Previously when matching either a regular file or directory, 'git-predicate'
would search a list with a length equal to the number of files in the
repository. As a search operation happens for roughly every file in the
repository, this meant that the time taken to use 'git-predicate' to traverse
all the files in a repository was roughly exponential with respect to the
number of files in the repository.

Now, for matching regular files or symlinks, 'git-predicate' uses a vhash
using the inode value as the key. This should perform roughly in constant
amount of time, instead of linear with respect to the number of files in the
repository.

For matching directories, 'git-predicate' now uses a tree structure stored in
association lists. To check if a directory is in the tree, the tree is
traversed from the root. The time complexity of this depends on the shape of
the tree, but it should be an improvement on searching through the list of all
files.

* guix/git-download.scm (files->directory-tree, directory-in-tree?): New
procedures.
(git-predicate): Compute DIRECTORY-TREE.  Turn INODES into a vhash.
Adjust body of lambda accordingly.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-25 23:24:16 +02:00
Ludovic Courtès 84620dd0c4
offload: Fix potential file descriptor and memory leak. 
The '%slots' list could grow indefinitely; in practice though,
guix-daemon is likely to restart 'guix offload' often enough.

* guix/scripts/offload.scm (%slots): Remove.
(choose-build-machine): Don't 'set!' %SLOTS.  Return the acquired slot
as a second value.
(process-request): Adjust accordingly.  Release the returned slot after
'transfer-and-offload'.
 2017-07-25 23:24:16 +02:00
Ludovic Courtès 236cae0628
offload: Disconnect sessions created by 'machine-load'. 
This fixes a memory leak that can be seen by running:

  (map (lambda _ (machine-load m)) (iota 1000))

* guix/scripts/offload.scm (machine-load): Add call to 'disconnect!'.
 2017-07-25 23:24:15 +02:00
Oleg Pykhalov af79852c99
gnu: neofetch: Fix search path. 
* gnu/packages/admin.scm (neofetch): Fix "No such file or directory" for distro logo.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-25 23:07:37 +02:00
Marius Bakke 16fb1e79ca
gnu: chess: Update to 6.2.5. 
* gnu/packages/games.scm (chess): Update to 6.2.5.
 2017-07-25 23:07:37 +02:00
Marius Bakke 4eacb47de0
gnu: feh: Update to 2.19.1. 
* gnu/packages/image-viewers.scm (feh): Update to 2.19.1.
 2017-07-25 22:58:43 +02:00
Marius Bakke 5f02ea1a6d
gnu: notmuch: Update to 0.25. 
* gnu/packages/mail.scm (notmuch): Update to 0.25.
 2017-07-25 22:58:43 +02:00
Kei Kebreau 4fdab17371
gnu: python2-urwid: Actually build urwid for Python 2. 
* gnu/packages/python.scm (python2-urwid)[arguments]: Add #:python.
 2017-07-25 15:29:29 -04:00
Leo Famulari e9f468dfcd
gnu: tcpdump: Update to 4.9.1 [fixes CVE-2017-11108]. 
* gnu/packages/admin.scm (tcpdump): Update to 4.9.1.
 2017-07-25 15:25:44 -04:00
Feng Shu 90062885b7
gnu: you-get: Update to 0.4.803. 
* gnu/packages/video.scm (you-get): Update to 0.4.803.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-25 14:44:19 -04:00
Kei Kebreau c7db7b86ce
gnu: perl-dbd-mysql: Fix CVE-2017-10788. 
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
 2017-07-25 14:11:20 -04:00
Dave Love bb0f6d7526
gnu: openmpi: Description mentions MPI 3.0. 
* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-25 18:10:08 +02:00
Dave Love 1f9bff4152
gnu: openmpi: Update to 1.10.7. 
* gnu/packages/mpi.scm (openmpi): Update to 1.10.7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-25 18:09:27 +02:00
Ludovic Courtès 386f541556
hydra: Add 'guix.SYSTEM' jobs. 
* build-aux/hydra/guix.scm (package->alist): Disable grafting.
(hydra-jobs): Return 'guix.SYSTEM' jobs in addition to 'tarball'.
 2017-07-25 17:46:17 +02:00
Ludovic Courtès 06ce8e5680
hydra: Simplify 'tarball' job. 
* build-aux/hydra/guix.scm (tarball-package): Remove.
(hydra-jobs): Use 'dist-package' instead of 'tarball-package'.
 2017-07-25 17:46:17 +02:00
Ludovic Courtès 70bc608503
gnu: Add guile2.0-git. 
* gnu/packages/guile.scm (guile2.0-git): New variable.
 2017-07-25 17:46:17 +02:00
Ludovic Courtès 726ecfeb3a
gnu: Add guile2.0-bytestructures. 
* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-bytestructures)[source]: Use it.
[arguments]: Unpack the source.
[native-inputs]: New field.
(guile2.0-bytestructures): New variable.
 2017-07-25 17:46:17 +02:00
Kei Kebreau 0093b1262b
gnu: maxima: Ensure binutils are available at runtime. 
* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
 2017-07-25 07:58:55 -04:00
Kei Kebreau 6b2eafaaa8
Revert "gnu: maxima: Ensure gcc is available at runtime." 
This reverts commit f2fa86cc82.
Commit 5ea8dbf0c9 fixes the underlying
issue in GNU Common Lisp.
 2017-07-25 07:58:46 -04:00
Kei Kebreau 5ea8dbf0c9
gnu: gcl: Ensure gcc and binutils are available at runtime. 
* gnu/packages/lisp.scm (gcl)[arguments]: Add -fgnu89-inline to CFLAGS.
Add GCC path to make-flags. Modify 'pre-conf' phase. Add 'wrap' phase.
 2017-07-25 07:58:06 -04:00
Mark H Weaver ebc9f7050c
gnu: webkitgtk: Update to 2.16.6 [security fixes]. 
Includes fixes for CVE-2017-7039, CVE-2017-7018, CVE-2017-7030, CVE-2017-7037,
CVE-2017-7034, CVE-2017-7055, CVE-2017-7056, CVE-2017-7064, CVE-2017-7061,
CVE-2017-7048, and CVE-2017-7046.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.6.
 2017-07-25 07:32:25 -04:00
Ludovic Courtès a84ea2191e
system: Add a default '.guile' skeleton. 
* gnu/system/shadow.scm (default-skeletons): Add ".guile".
 2017-07-25 12:23:26 +02:00
Ludovic Courtès 585347d7aa
Add 'guix weather'. 
* guix/scripts/weather.scm: New file.
* Makefile.am (MODULES): Add it.
* doc/guix.texi (Substitutes, Invoking guix publish): Mention "guix
weather".
(Invoking guix weather): New node.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-07-25 12:15:43 +02:00
Leo Famulari 5b4a6ba044
gnu: xterm: Update to 330. 
* gnu/packages/xorg.scm (xterm): Update to 330.
 2017-07-24 22:54:18 -04:00
Leo Famulari 0e8fed86d8
gnu: dialog: Update to 1.3-20170509. 
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20170509.
 2017-07-24 22:54:15 -04:00
Leo Famulari fce8285e4b
gnu: opus: Update to 1.2.1. 
* gnu/packages/xiph.scm (opus): Update to 1.2.1.
[source]: Use new source URL.
 2017-07-24 17:37:05 -04:00
Efraim Flashner f6062e5432
gnu: perl-data-dumper-concise: Update to 2.023. 
* gnu/packages/perl.scm (perl-data-dumper-concise): Update to 2.023.
[source]: Update source uri.
 2017-07-24 22:35:11 +03:00
Efraim Flashner 1627ca0494
gnu: perl-context-preserve: Update to 0.02. 
* gnu/packages/perl.scm (perl-context-preserve): Update to 0.02.
 2017-07-24 22:35:09 +03:00
Christopher Baines d61a894bfa
gnu: gnome: Add deja-dup. 
* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
 2017-07-24 20:05:49 +01:00