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46852 Commits

Author SHA1 Message Date
Brian Leung d9340de903
gnu: khmer: Make gzip timestamps writable. 
* gnu/packages/bioinformatics.scm (khmer)[arguments]: Add custom phase
to make gzip timestamps writable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-08-05 10:22:20 +03:00
Rutger Helling 3f14c9135b
gnu: mesa: Enable Intel 32-bit Vulkan drivers. 
* gnu/packages/gl.scm (mesa)[arguments]: Also build Vulkan drivers for Intel
on i686-linux.
 2019-08-05 08:25:04 +02:00
Mark H Weaver 5ee4d11ff4
gnu: linux-libre: Update to 5.2.6. 
* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.6.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
 2019-08-04 22:02:02 -04:00
Mark H Weaver b4478eb2e3
gnu: linux-libre@4.19: Update to 4.19.64. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.64.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
 2019-08-04 22:01:59 -04:00
Mark H Weaver cf1941712f
gnu: linux-libre@4.14: Update to 4.14.136. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.136.
(linux-libre-4.14-pristine-source)[hash]: Update hash.
 2019-08-04 22:01:57 -04:00
Mark H Weaver 8079493c6c
gnu: linux-libre@4.9: Update to 4.9.187. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.187.
(linux-libre-4.9-pristine-source)[hash]: Update hash.
 2019-08-04 22:01:55 -04:00
Mark H Weaver 71f9016a4f
gnu: linux-libre@4.4: Update to 4.4.187. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.187.
(linux-libre-4.4-pristine-source)[hash]: Update hash.
 2019-08-04 22:01:52 -04:00
Mark H Weaver 95580bda05
gnu: nss: Update to 3.45 [security fixes]. 
Includes fixes for CVE-2019-11719, CVE-2019-11727, and CVE-2019-11729.

* gnu/packages/nss.scm (nss): Update to 3.45.
 2019-08-04 21:59:38 -04:00
Tobias Geerinckx-Rice 35600cd9a0
gnu: docker-compose: Remove inputs for old Python versions. 
* gnu/packages/docker.scm (docker-compose)[inputs]:
Remove python2-backport-ssl-match-hostname and python-ipaddress.
 2019-08-05 01:06:58 +02:00
Tobias Geerinckx-Rice d12578f2e2
gnu: python-docker-py: Propagate dependencies. 
* gnu/packages/docker.scm (python-docker-py)[inputs]:
Move python-docker-pycreds and python-paramiko from here…
[propagated-inputs]: …to here.
(docker-compose)[inputs]: Remove them.
 2019-08-05 01:06:58 +02:00
Tobias Geerinckx-Rice e643d90f0f
gnu: docker-compose: Remove Windows-specific input. 
* gnu/packages/docker.scm (docker-compose)[inputs]:
Remove python-colorama.
 2019-08-05 01:06:57 +02:00
Marius Bakke 5b689de58d
gnu: x265: Update to 3.1.2. 
* gnu/packages/video.scm (x265): Update to 3.1.2.
 2019-08-05 00:17:09 +02:00
Marius Bakke 621ce95cfe
gnu: x265: Update source URI. 
* gnu/packages/video.scm (x265)[source](uri): Add the canonical upstream at
<https://bitbucket.org/multicoreware/x265>.
 2019-08-05 00:17:09 +02:00
Marius Bakke 15b5963300
gnu: i3-wm: Update to 4.17. 
* gnu/packages/wm.scm (i3-wm): Update to 4.17.
 2019-08-04 17:39:04 +02:00
Marius Bakke cb96d239e6
gnu: i3status: Update to 2.13. 
* gnu/packages/wm.scm (i3status): Update to 2.13.
[arguments]: Remove #:make-flags and #:phases.  Add #:out-of-source?.
[native-inputs]: Add DOCBOOK-XSL, LIBXML2 and XMLTO.
 2019-08-04 17:38:13 +02:00
Marius Bakke 4f868257f3
gnu: samba: Update to 4.10.6. 
* gnu/packages/samba.scm (samba): Update to 4.10.6.
 2019-08-04 16:22:35 +02:00
Marius Bakke 2e2db09280
gnu: strace: Update to 5.2. 
* gnu/packages/linux.scm (strace): Update to 5.2.
 2019-08-04 16:22:20 +02:00
Marius Bakke 16feaeefc9
gnu: libevent: Update to 2.1.11. 
* gnu/packages/libevent.scm (libevent): Update to 2.1.11.
 2019-08-04 16:22:01 +02:00
Marius Bakke febbe43155
gnu: exiv2: Update to 0.27.2. 
* gnu/packages/image.scm (exiv2): Update to 0.27.2.
 2019-08-04 16:21:43 +02:00
Marius Bakke 9728def2e9
gnu: enchant: Update to 2.2.5. 
* gnu/packages/enchant.scm (enchant): Update to 2.2.5.
 2019-08-04 16:21:26 +02:00
Marius Bakke 6bf53ad58d
gnu: python-mako: Update to 1.1.0. 
* gnu/packages/python-xyz.scm (python-mako): Update to 1.1.0.
[arguments]: New field.
[native-inputs]: Remove PYTHON-NOSE.
 2019-08-04 14:02:48 +02:00
Marius Bakke 4668464f29
gnu: flac: Update to 1.3.3. 
* gnu/packages/xiph.scm (flac): Update to 1.3.3.
[source](patches): Remove.
* gnu/packages/patches/flac-CVE-2017-6888.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2019-08-04 13:57:53 +02:00
Marius Bakke 3082280cf9
gnu: libpciaccess: Update to 0.16. 
* gnu/packages/xorg.scm (libpciaccess): Update to 0.16.
 2019-08-04 13:49:57 +02:00
Marius Bakke 8ed97b6ea1
gnu: nss, nss-certs: Update to 3.45. 
* gnu/packages/certs.scm (nss-certs): Update to 3.45.
* gnu/packages/nss.scm (nss): Likewise.
 2019-08-04 13:49:57 +02:00
Marius Bakke cb16a9fba9
gnu: python-packaging: Update to 19.1. 
* gnu/packages/python-xyz.scm (python-packaging): Update to 19.1.
 2019-08-04 13:49:56 +02:00
Marius Bakke ec227df31a
gnu: perl-cgi: Update to 4.44. 
* gnu/packages/web.scm (perl-cgi): Update to 4.44.
 2019-08-04 13:49:56 +02:00
Marius Bakke ff292a77a9
gnu: perl-http-message: Update to 6.18. 
* gnu/packages/web.scm (perl-http-message): Update to 6.18.
 2019-08-04 13:49:56 +02:00
Marius Bakke 81e74dc80b
gnu: libva: Update to 2.5.0. 
* gnu/packages/video.scm (libva): Update to 2.5.0.
 2019-08-04 13:49:56 +02:00
Marius Bakke 1648530f4a
gnu: gtk+: Update to 3.24.10. 
* gnu/packages/gtk.scm (gtk+): Update to 3.24.10.
 2019-08-04 13:49:56 +02:00
Marius Bakke 140716a5c9
gnu: cups-filters: Update to 1.25.1. 
* gnu/packages/cups.scm (cups-filters): Update to 1.25.1.
 2019-08-04 13:49:56 +02:00
Marius Bakke 6d9de48d15
gnu: subversion: Update to 1.10.6 [fixes CVE-2018-11782, CVE-2019-0203]. 
* gnu/packages/version-control.scm (subversion): Update to 1.10.6.
 2019-08-04 13:49:56 +02:00
Marius Bakke cc3c5fc5e1
gnu: mariadb: Update to 10.1.41 [security fixes]. 
This fixes CVE-2019-2805, CVE-2019-2740, CVE-2019-2739, and CVE-2019-2737.

* gnu/packages/databases.scm (mariadb): Update to 10.1.41.
[source](uri): Update download URL.
 2019-08-04 13:49:56 +02:00
Marius Bakke 4661fa76c7
gnu: python-mako: Update to 1.0.14. 
* gnu/packages/python-xyz.scm (python-mako): Update to 1.0.14.
 2019-08-04 13:49:55 +02:00
Marius Bakke 756a980953
gnu: python-cython: Update to 0.29.13. 
* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.13.
 2019-08-04 13:49:55 +02:00
Marius Bakke c0e40f4fd2
gnu: ImageMagick: Update to 6.9.10-58. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-58.
 2019-08-04 13:49:55 +02:00
Marius Bakke 7aad68f6d9
gnu: libwebp: Update to 1.0.3. 
* gnu/packages/image.scm (libwebp): Update to 1.0.3.
 2019-08-04 13:49:55 +02:00
Marius Bakke f184893af0
gnu: MariaDB: Disable the TokuDB plugin. 
Fixes <https://bugs.gnu.org/35521>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/databases.scm (mariadb)[arguments]: Pass "-DTOKUDB_OK" in
<#:configure-flags>.  Enable the "innodb_fts.crash_recovery" test, which
likely failed because of the high I/O load induced by TokuDB.
[inputs]: Remove SNAPPY.

(cherry picked from commit bba7a77ed9)
 2019-08-04 13:49:55 +02:00
Marius Bakke 275cce3d87
gnu: python-cython: Speed up test suite. 
* gnu/packages/python-xyz.scm (python-cython)[arguments]: In the CHECK phase,
disable compiler optimizations and enable (some) parallel tests.

(cherry picked from commit e9194eb048)
 2019-08-04 13:49:55 +02:00
Marius Bakke 18090a9735
gnu: perl-try-tiny: Update to 0.30. 
* gnu/packages/perl.scm (perl-try-tiny): Update to 0.30.
 2019-08-04 13:49:55 +02:00
Marius Bakke 1c7d7f3f65
gnu: double-conversion: Update to 3.1.5. 
* gnu/packages/maths.scm (double-conversion): Update to 3.1.5.
 2019-08-04 13:49:54 +02:00
Marius Bakke a33925d122
gnu: Remove pcre2/fixed. 
* gnu/packages/pcre.scm (pcre2/fixed): Remove variable.
(pcre2)[replacement]: Remove.
[source](patches): New field.
* gnu/packages/php.scm (php)[inputs]: Change PCRE2/FIXED to PCRE2.
 2019-08-04 13:49:45 +02:00
Marius Bakke f35d313265
Merge branch 'master' into staging 2019-08-04 13:41:27 +02:00
Marius Bakke e920037793
gnu: docker-cli: Print a usable version string. 
* gnu/packages/docker.scm (docker-cli)[arguments]<#:phases>: Set the VERSION
variable before building the package.
 2019-08-04 13:33:42 +02:00
Marius Bakke 7f2e852267
gnu: ungoogled-chromium: Update to 76.0.3809.87-0.6ea9390. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 76.
(%chromium-version): Set to 76.0.3809.87.
(%ungoogled-revision): Set to 6ea939002bae43a27910e03569d43519d07842e7.
(%debian-revision): Set to debian/76.0.3809.87-2.
(%chromium-origin, %ungoogled-origin, %debian-origin): Update hashes.
(gentoo-patch, gentoo-patches): New procedures.
(%auxiliary-patches): New variable.
(ungoogled-chromium-source): Ignore Ungoogleds bundled Debian patches, as well
as some of Debians build fixes.  Apply %AUXILIARY-PATCHES.
(ungoogled-chromium)[arguments]: Adjust unbundling substitutions.  Do not set
Blink symbol level.
 2019-08-04 13:33:42 +02:00
Marius Bakke f339cb188a
gnu: re2: Update to 2019-08-01. 
* gnu/packages/regex.scm (re2): Update to 2019-08-01.
 2019-08-04 13:33:42 +02:00
Efraim Flashner ac6b78488f
build/cargo-build-system: Patch cargo checksums. 
* guix/build/cargo-build-system.scm (generate-all-checksums): New
procedure.
(update-cargo-lock, patch-cargo-checksums): New phases.
(%standard-phases): Add 'update=cargo-lock after 'configure and
'patch-cargo-checksums after 'patch-generated-file-shebangs.
* doc/guix.texi (Build System)[cargo-build-system]: Mention how
Cargo.lock files are handled.
 2019-08-04 11:53:27 +03:00
Tobias Geerinckx-Rice ded545d562
gnu: mpfi: Use @acronym{} in Texinfo. 
* gnu/packages/multiprecision.scm (mpfi)[description]: Substitute
@acronym{} for @dfn{}.
 2019-08-03 23:26:40 +02:00
Tobias Geerinckx-Rice aaf80ba781
gnu: mpc: Use @acronym{} in Texinfo. 
* gnu/packages/multiprecision.scm (mpc)[description]: Substitute
@acronym{} for @dfn{}.
 2019-08-03 23:26:40 +02:00
Tobias Geerinckx-Rice 932b607293
gnu: mpfr: Use @acronym{} in Texinfo. 
* gnu/packages/multiprecision.scm (mpfr)[description]: Substitute
@acronym{} for @dfn{}.
 2019-08-03 23:26:40 +02:00
Tobias Geerinckx-Rice 245fae9077
gnu: gmp: Use @acronym{} in Texinfo. 
* gnu/packages/multiprecision.scm (gmp)[description]: Substitute
@acronym{} for @dfn{}.
 2019-08-03 23:26:40 +02:00