aa81eb73ce
gnu: glibc-hurd-headers: Use correct "--host".
...
* gnu/packages/base.scm (glibc/hurd-headers)[arguments]: Use "i586-pc-gnu"
instead of "i686-pc-gnu".
2016-06-06 14:47:46 +03:00
5d4d7a9aa9
gnu: glibc-hurd: Update to 20160518.
...
* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 20160518.
[propagated-inputs]: Use hurd-core-headers.
[native-inputs]: Remove libpthread's source and "patch/libpthread-patch".
[arguments]: Add augment-libc.so and pre-configure-set-pwd phases.
Remove prepare-libpthread phase. Stop removing "--with-headers="
from original-configure-flags.
* gnu/packages/patches/glibc-hurd-extern-inline.patch: Remove patch.
* gnu/packages/patches/libpthread-glibc-preparation.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-06-06 14:42:45 +03:00
2cf0221f0e
gnu: pcre: Remove now-unneeded replacement.
...
* gnu/packages/pcre.scm (pcre)[replacement]: Remove.
(pcre-fixed): Remove.
2016-05-23 15:02:55 +02:00
bc73a84398
Merge branch 'master' into core-updates
2016-05-23 15:02:26 +02:00
624d4e2e6b
gnu: gnu-pw-mgr: Update to 2.0.
...
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0.
2016-05-22 16:58:21 +03:00
13913c52d5
gnu: imagemagick: Update to 6.9.4-4.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4.
2016-05-22 03:51:57 -04:00
88bb4197c4
gnu: Add python2-rope.
...
* gnu/packages/python.scm (python2-rope): New variable.
2016-05-22 14:19:52 +10:00
3c47489766
gnu: Add gnome-calendar.
...
* gnu/packages/gnome.scm (gnome-calendar): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-21 23:30:37 +02:00
548994142f
gnu: Add envstore.
...
* gnu/package/shellutils.scm: New file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-21 23:30:37 +02:00
b9b447be64
gnu: Add sicp.
...
* gnu/packages/scheme.scm (sicp): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-05-21 23:30:37 +02:00
a56be436d0
gnu: Add dia.
...
* gnu/packages/gnome.scm (dia): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-21 23:30:37 +02:00
12b6f6527e
gnu: openssl: Remove workaround for GCC 4.9.3 (no longer used).
...
* gnu/packages/tls.scm (openssl)[arguments]: In the 'configure' phase,
remove the workaround that passed "-mfpu=vfpv3" on armhf systems.
2016-05-21 12:52:51 -04:00
3c9a7185e4
gnu: linux-libre: Update to 4.5.5.
...
* gnu/packages/linux.scm (linux-libre): Update to 4.5.5.
2016-05-20 18:58:15 -04:00
4483a1185d
gnu: linux-libre-4.4: Update to 4.4.11.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11.
2016-05-20 18:58:06 -04:00
987a118334
gnu: Add default gcc-objc++.
...
* gnu/packages/gcc.scm (gcc-objc++): New variable.
2016-05-20 15:19:48 +02:00
a5948c0d41
gnu: Add gcc-objc++-4.9.
...
* gnu/packages/gcc.scm (gcc-objc++-4.9): New variable.
2016-05-20 15:19:48 +02:00
8b196ad208
gnu: Add default gcc-objc.
...
* gnu/packages/gcc.scm (gcc-objc): New variable.
2016-05-20 15:19:48 +02:00
2d69c1616d
gnu: Add gcc-objc-4.9.
...
* gnu/packages/gcc.scm (gcc-objc-4.9): New variable.
2016-05-20 15:19:33 +02:00
813efdded1
gnu: r-rcpparmadillo: Update to 0.6.700.6.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
2016-05-20 15:18:23 +02:00
945eef85c5
gnu: armadillo: Update to 6.700.7.
...
* gnu/packages/maths.scm (armadillo): Update to 6.700.7.
2016-05-20 15:18:23 +02:00
7740f58128
gnu: r-genomation: Update to 1.4.2.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
2016-05-20 15:18:23 +02:00
f6225d135c
gnu: r-jsonlite: Update to 0.9.20.
...
* gnu/packages/web.scm (r-jsonlite): Update to 0.9.20.
2016-05-20 15:18:23 +02:00
c969453e1c
gnu: r-plotly: Update to 3.6.0.
...
* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
2016-05-20 15:18:23 +02:00
95513f284f
gnu: r-matrixstats: Update to 0.50.2.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
2016-05-20 15:18:23 +02:00
b8f6a97ebd
gnu: r-r-rsp: Update to 0.30.0.
...
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
2016-05-20 15:18:23 +02:00
f0c56a2411
gnu: r-rmarkdown: Update to 0.9.6.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
2016-05-20 15:18:23 +02:00
2f7ac060ff
gnu: r-plotrix: Update to 3.6-2.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
2016-05-20 15:18:23 +02:00
133f27b06a
gnu: r-devtools: Update to 1.11.1.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
2016-05-20 15:18:23 +02:00
3624ad7150
gnu: r-git2r: Update to 0.15.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.
2016-05-20 15:18:23 +02:00
c1e2c9d41a
gnu: r-openssl: Update to 0.9.3.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.
2016-05-20 15:18:23 +02:00
383f6337a0
gnu: r-testthat: Update to 1.0.2.
...
* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.
2016-05-20 15:18:23 +02:00
1b206aeb00
gnu: r-knitr: Update to 1.13.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.13.
2016-05-20 15:18:23 +02:00
d5130e6345
gnu: r-highr: Update to 0.6.
...
* gnu/packages/statistics.scm (r-highr): Update to 0.6.
2016-05-20 15:18:23 +02:00
df25b0048a
gnu: r-formatr: Update to 1.4.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.4.
2016-05-20 15:18:23 +02:00
84e5368719
gnu: r-evaluate: Update to 0.9.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.9.
2016-05-20 15:18:23 +02:00
9a0ccf43cc
gnu: r-bh: Update to 1.60.0-2.
...
* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2.
2016-05-20 15:18:23 +02:00
a76b3f6914
gnu: r-dbi: Update to 0.4-1.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1.
2016-05-20 15:18:23 +02:00
eb1a5b65c0
gnu: r-rcpp: Update to 0.12.5.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5.
2016-05-20 15:18:23 +02:00
8ede249e0a
gnu: r-genomicfeatures: Update to 1.24.2.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2.
2016-05-20 15:18:23 +02:00
192e1ea8d1
gnu: r-summarizedexperiment: Update to 1.2.2.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2.
2016-05-20 15:18:23 +02:00
d7420566a9
gnu: r-biocparallel: Update to 1.6.2.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2.
2016-05-20 15:18:23 +02:00
73af676feb
gnu: r-annotationdbi: Update to 1.34.2.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2.
2016-05-20 15:18:23 +02:00
679e670b36
gnu: r-variantannotation: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1.
2016-05-20 15:18:23 +02:00
186ed87337
gnu: r-genomeinfodb: Update to 1.8.1.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.1.
2016-05-20 15:18:23 +02:00
0fc4a8afba
gnu: btrfs-progs: Update to 4.5.3.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.5.3.
2016-05-19 21:04:22 -04:00
0e40755d35
gnu: jemalloc: Update to 4.2.0.
...
* gnu/packages/jemalloc.scm (jemalloc): Update to 4.2.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-05-19 20:43:13 +03:00
119b83989d
gnu: expat: Fix CVE-2016-0718. Improve fix for CVE-2015-1283.
...
* gnu/packages/patches/expat-CVE-2015-1283-refix.patch,
gnu/packages/patches/expat-CVE-2016-0718.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
[source]: Use new patches.
2016-05-19 10:27:18 -04:00
9684e30b9b
gnu: flann: Do not install .a files.
...
* gnu/packages/maths.scm (flann)[arguments]: Add #:phases.
2016-05-19 14:51:21 +02:00
458480235b
gnu: python: Add 'python' variables for different major/minor versions.
...
* gnu/packages/python.scm (python-2): Rename variable to...
(python-2.7): ...this.
(python-2): Refer to "python-2.7".
(python): Rename variable to...
(python-3.4): ...this.
(python-3): Refer to "python-3.4".
(python): Refer to "python-3".
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-19 14:51:21 +02:00
39b3033731
gnu: flann: Strip .mex file.
...
* gnu/packages/maths.scm (flann)[arguments]: Add #:strip-directories.
2016-05-19 14:51:21 +02:00
Manolis Ragkousis